Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.9e-210 734.2 363 100.0
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.6e-184 648.3 364 87.1
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 7.4e-182 640.6 364 86.5
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 1.0e-175 620.2 355 85.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 6.7e-175 617.5 354 85.0
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.4e-174 614.8 356 85.1
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 7.7e-163 577.4 365 77.5
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 1.2e-158 563.5 370 76.2
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 1.4e-156 556.6 306 88.9
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 2.6e-150 535.8 362 71.3
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 3.8e-146 521.9 357 70.9
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 4.2e-145 518.5 358 68.7
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 5.5e-145 518.1 358 70.1
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 8.9e-143 510.8 354 69.2
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 7.5e-142 507.7 357 70.6
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 9.8e-142 507.3 357 68.9
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 9.8e-142 507.3 364 66.8
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 2.2e-141 506.1 363 67.5
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 6.3e-141 504.6 358 69.3
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 8.3e-141 504.2 367 68.4
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 3.1e-140 502.3 364 66.8
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 2.7e-139 499.2 369 66.9
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.3e-138 496.9 363 66.9
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.9e-138 495.7 365 66.3
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.8e-138 495.4 365 66.3
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.1e-137 493.8 360 67.2
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.5e-137 492.7 370 65.9
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 5.6e-137 491.5 360 65.6
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 9.5e-137 490.7 362 66.9
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 3.6e-136 488.8 361 65.9
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.0e-135 487.3 357 66.4
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.4e-135 486.9 333 69.7
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.4e-135 486.9 362 65.7
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.8e-135 486.5 357 66.4
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 6.8e-135 484.6 362 65.5
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.0e-134 483.0 361 66.8
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.4e-134 482.3 360 64.7
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 5.8e-134 481.5 357 66.1
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.3e-133 480.3 363 64.5
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.7e-133 479.9 362 65.7
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.1e-132 477.2 362 65.5
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 1.8e-132 476.5 362 64.1
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 3.2e-132 475.7 357 63.0
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 5.4e-132 474.9 365 62.7
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 7.0e-132 474.6 362 62.2
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 7.0e-132 474.6 367 62.9
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 7.0e-132 474.6 359 63.8
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 6.0e-131 471.5 355 65.1
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 7.8e-131 471.1 361 62.6
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 1.3e-130 470.3 373 63.0
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.3e-130 470.3 357 65.0
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 5.0e-130 468.4 361 63.2
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.9e-129 466.5 356 63.8
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 7.3e-129 464.5 359 62.7
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.1e-127 460.7 366 63.1
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.1e-127 460.7 356 62.6
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 4.0e-127 458.8 362 62.7
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 5.2e-127 458.4 361 62.9
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 8.9e-127 457.6 363 61.7
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.2e-126 457.2 356 61.5
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 2.6e-126 456.1 360 61.7
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 2.6e-126 456.1 362 62.2
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 3.4e-126 455.7 361 62.6
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 4.4e-126 455.3 363 61.4
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 5.8e-126 454.9 361 62.0
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.8e-126 454.9 408 56.1
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 7.5e-126 454.5 361 62.0
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.3e-125 453.8 355 62.5
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 6.4e-125 451.4 431 54.5
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 8.3e-125 451.1 355 62.8
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 8.3e-125 451.1 358 61.2
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 8.3e-125 451.1 358 61.2
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 1.1e-124 450.7 360 62.8
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.9e-124 449.9 329 68.1
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.9e-124 449.9 353 61.5
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.4e-124 449.5 363 60.6
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 2.4e-124 449.5 360 60.3
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 9.2e-124 447.6 361 61.2
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 9.2e-124 447.6 361 61.2
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 9.2e-124 447.6 481 50.5
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.6e-123 446.8 361 60.1
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 2.1e-123 446.4 363 59.5
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 7.8e-123 444.5 359 61.0
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 7.8e-123 444.5 428 54.4
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 1.0e-122 444.1 363 59.8
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 3.9e-122 442.2 358 60.1
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 1.1e-121 440.7 355 60.8
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 1.1e-121 440.7 381 59.1
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 5.6e-121 438.3 356 60.4
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 7.3e-121 438.0 356 60.7
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 2.8e-120 436.0 363 59.0
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.7e-115 419.5 400 54.2
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.5e-113 413.7 356 58.7
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 2.1e-112 409.8 362 55.5
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 2.0e-110 403.3 298 64.8
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 4.9e-109 398.7 246 73.6
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 7.1e-108 394.8 357 57.7
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 9.2e-108 394.4 346 56.1
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 6.0e-107 391.7 360 53.6
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 2.3e-106 389.8 362 54.7
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 2.4e-103 379.8 361 53.2
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.3e-101 374.0 351 55.8
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 3.2e-100 369.4 385 49.6
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 3.9e-98 362.5 323 56.7
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 5.1e-98 362.1 356 54.2
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 4.3e-97 359.0 204 82.8
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.3e-93 347.4 241 68.9
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.5e-89 334.0 424 43.6
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 4.3e-89 332.4 295 58.6
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 3.4e-86 322.8 282 57.8
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.3e-82 310.8 415 41.4
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 6.7e-82 308.5 207 69.1
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 1.1e-81 307.8 361 47.9
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 3.3e-81 306.2 389 42.9
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.4e-78 296.2 361 42.7
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 4.5e-78 295.8 154 84.4
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 7.7e-70 268.5 232 62.1
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 2.8e-64 250.0 132 83.3
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 6.9e-63 245.4 126 83.3
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 2.8e-56 223.4 257 47.1
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.8e-56 223.4 257 47.1
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.2e-41 174.9 185 51.9
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 2.8e-40 170.2 128 55.5
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.1e-39 168.3 83 89.2
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 7.0e-39 165.6 214 46.3
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 1.2e-38 164.9 204 44.6
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.2e-38 164.9 204 44.6
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.7e-29 134.4 75 80.0
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 4.0e-26 123.2 121 56.2
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 5.9e-22 109.4 107 56.1
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.9e-21 106.7 123 48.8
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 4.3e-20 103.2 197 33.0
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.8e-10 69.3 95 45.3


User provided reference genes

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