Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.7e-67 258.5 123 100.0
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 9.5e-65 250.0 123 98.4
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.6e-59 232.6 136 83.1
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.6e-59 232.6 136 83.1
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.6e-59 231.1 136 83.1
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.9e-53 211.8 123 82.1
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 8.4e-53 210.3 136 76.5
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 8.4e-53 210.3 136 76.5
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 4.6e-51 204.5 115 83.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 5.6e-49 197.6 123 76.4
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 7.3e-49 197.2 123 74.8
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 3.1e-47 191.8 106 81.1
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.2e-46 189.9 122 73.0
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.2e-46 189.9 122 73.0
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 3.2e-44 181.8 123 73.2
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 9.3e-44 180.3 123 69.1
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.2e-43 179.9 123 71.5
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.3e-42 176.4 106 74.5
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 3.0e-42 175.3 124 67.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 3.9e-42 174.9 123 68.3
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 5.1e-42 174.5 126 66.7
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 5.1e-42 174.5 122 68.0
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 5.1e-42 174.5 122 68.0
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.5e-41 172.9 123 65.9
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.5e-41 172.9 122 68.0
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 9.6e-41 170.2 123 69.1
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 9.6e-41 170.2 124 67.7
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.8e-40 168.7 123 64.2
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 6.2e-40 167.5 123 65.0
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 8.1e-40 167.2 123 64.2
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.1e-39 166.8 98 73.5
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.1e-39 166.8 106 73.6
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.4e-39 166.4 123 62.6
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.4e-39 165.6 123 65.9
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 4.0e-39 164.9 124 64.5
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 5.3e-39 164.5 123 63.4
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.6e-38 162.2 124 63.7
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.6e-38 162.2 123 65.0
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.6e-38 162.2 124 63.7
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 3.4e-38 161.8 102 68.6
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.4e-38 161.8 123 67.5
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 4.5e-38 161.4 123 62.6
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 2.2e-37 159.1 123 65.0
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 6.4e-37 157.5 124 65.3
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.1e-36 156.8 123 61.0
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.4e-36 156.4 105 67.6
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.9e-36 156.0 124 65.3
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 4.2e-36 154.8 124 64.5
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 5.5e-36 154.5 106 64.2
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.2e-35 153.3 105 63.8
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.6e-35 152.9 107 67.3
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 3.5e-35 151.8 107 68.2
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 4.6e-35 151.4 123 61.0
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 4.6e-35 151.4 123 61.0
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 6.0e-35 151.0 95 71.6
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 3.0e-34 148.7 111 62.2
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.3e-33 145.2 95 66.3
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 5.6e-33 144.4 95 67.4
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 7.4e-33 144.1 80 82.5
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 7.4e-33 144.1 94 70.2
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.3e-32 143.3 95 66.3
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.3e-32 143.3 98 63.3
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.7e-32 141.7 95 65.3
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.4e-31 139.8 91 67.0
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.3e-31 137.9 80 77.5
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 5.3e-31 137.9 104 61.5
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.2e-30 136.7 86 69.8
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 2.0e-30 136.0 93 65.6
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 2.0e-30 136.0 93 65.6
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 2.0e-30 136.0 104 61.5
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 2.6e-30 135.6 98 63.3
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 3.4e-30 135.2 104 63.5
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 3.4e-30 135.2 93 65.6
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 3.4e-30 135.2 116 57.8
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 4.5e-30 134.8 93 64.5
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 4.5e-30 134.8 122 56.6
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 5.8e-30 134.4 123 57.7
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 5.8e-30 134.4 123 57.7
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 7.6e-30 134.0 98 62.2
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.0e-29 133.7 93 66.7
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.7e-29 132.9 122 55.7
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 2.2e-29 132.5 93 64.5
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.2e-29 132.5 84 69.0
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.8e-29 131.7 117 56.4
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 8.4e-29 130.6 107 58.9
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 1.4e-28 129.8 123 52.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.5e-28 127.9 85 68.2
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.6e-27 126.3 93 62.4
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.5e-27 125.2 121 52.1
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 4.6e-27 124.8 107 56.1
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.6e-27 124.8 104 57.7
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 7.9e-27 124.0 97 60.8
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.0e-26 123.6 84 65.5
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.3e-26 123.2 99 59.6
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.8e-26 122.9 99 58.6
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.3e-26 122.5 84 65.5
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.3e-26 122.5 99 59.6
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.0e-26 122.1 84 65.5
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.1e-26 121.3 99 58.6
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 8.7e-26 120.6 99 58.6
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.9e-25 119.4 99 57.6
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.9e-25 119.4 99 57.6
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 5.7e-25 117.9 99 58.6
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 2.2e-24 115.9 98 56.1
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.2e-24 115.9 120 50.0
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.8e-24 114.8 86 64.0
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 6.3e-24 114.4 85 58.8
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.4e-22 108.6 85 54.1
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.0e-21 107.1 85 56.5
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.3e-21 106.7 81 64.2
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.7e-21 106.3 85 58.8
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 2.9e-21 105.5 65 73.8
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 3.8e-21 105.1 85 60.0
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 2.7e-19 99.0 89 50.6
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.6e-19 98.2 78 56.4
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 5.3e-15 84.7 85 45.9
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.2e-14 83.6 83 49.4
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 4.5e-14 81.6 87 48.3
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 5.9e-14 81.3 87 48.3
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.0e-13 80.5 93 45.2
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.7e-13 79.7 95 44.2
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 6.5e-13 77.8 79 49.4
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 1.4e-12 76.6 76 50.0
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.1e-09 67.0 77 44.2
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.8e-08 62.4 77 44.2


User provided reference genes

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