Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 4.0e-31 137.5 72 100.0
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.4e-15 85.9 54 88.9
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-15 85.9 54 88.9
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-15 85.9 54 88.9
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-15 85.9 54 88.9
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-15 85.9 54 88.9
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-15 85.9 54 88.9
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.4e-15 85.9 54 88.9
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 3.1e-15 84.7 59 83.1
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 4.1e-15 84.3 54 87.0
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 5.3e-15 84.0 59 79.7
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 5.3e-15 84.0 59 81.4
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 6.9e-15 83.6 54 85.2
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 6.9e-15 83.6 54 85.2
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 6.9e-15 83.6 59 81.4
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 9.0e-15 83.2 59 81.4
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.2e-14 82.8 54 85.2
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.2e-14 82.8 59 79.7
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.2e-14 82.8 59 79.7
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.5e-14 82.4 54 83.3
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.5e-14 82.4 54 83.3
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.5e-14 82.4 59 79.7
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.5e-14 82.4 59 79.7
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.5e-14 82.4 59 79.7
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.5e-14 82.4 59 79.7
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.5e-14 82.4 59 79.7
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.5e-14 82.4 59 79.7
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.5e-14 82.4 54 83.3
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.5e-14 82.4 54 83.3
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.5e-14 82.4 54 83.3
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 2.0e-14 82.0 54 81.5
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 2.0e-14 82.0 54 83.3
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 2.6e-14 81.6 59 79.7
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 2.6e-14 81.6 58 81.0
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 2.6e-14 81.6 59 78.0
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.6e-14 81.6 59 79.7
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 2.6e-14 81.6 59 79.7
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 2.6e-14 81.6 59 78.0
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 2.6e-14 81.6 54 83.3
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 2.6e-14 81.6 59 78.0
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 3.4e-14 81.3 54 81.5
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 3.4e-14 81.3 54 81.5
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.4e-14 81.3 59 76.3
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 3.4e-14 81.3 54 83.3
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 3.4e-14 81.3 59 76.3
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 4.5e-14 80.9 59 78.0
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 4.5e-14 80.9 59 78.0
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 4.5e-14 80.9 59 76.3
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 4.5e-14 80.9 54 81.5
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 4.5e-14 80.9 59 78.0
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 4.5e-14 80.9 59 76.3
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 5.9e-14 80.5 59 76.3
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 5.9e-14 80.5 53 83.0
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 5.9e-14 80.5 53 83.0
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 5.9e-14 80.5 59 78.0
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 7.7e-14 80.1 54 81.5
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 7.7e-14 80.1 54 81.5
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 7.7e-14 80.1 54 77.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 7.7e-14 80.1 54 79.6
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 7.7e-14 80.1 54 79.6
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.0e-13 79.7 54 79.6
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.0e-13 79.7 59 76.3
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.0e-13 79.7 54 79.6
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.0e-13 79.7 54 79.6
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.0e-13 79.7 54 79.6
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.0e-13 79.7 54 81.5
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.3e-13 79.3 54 79.6
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.7e-13 79.0 59 76.3
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 2.2e-13 78.6 54 77.8
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 2.2e-13 78.6 54 77.8
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.9e-13 78.2 59 74.6
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 2.9e-13 78.2 53 79.2
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.9e-13 78.2 54 79.6
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 2.9e-13 78.2 54 75.9
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 2.9e-13 78.2 54 77.8
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 2.9e-13 78.2 54 77.8
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.8e-13 77.8 59 74.6
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 3.8e-13 77.8 59 74.6
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 5.0e-13 77.4 53 77.4
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 6.5e-13 77.0 54 75.9
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 6.5e-13 77.0 54 75.9
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 6.5e-13 77.0 53 77.4
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 8.5e-13 76.6 54 77.8
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 8.5e-13 76.6 54 77.8
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 8.5e-13 76.6 54 75.9
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 8.5e-13 76.6 54 77.8
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.4e-12 75.9 53 77.4
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.9e-12 75.5 59 72.9
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-12 75.5 54 75.9
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-12 75.5 54 75.9
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-12 75.5 54 75.9
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.9e-12 75.5 54 75.9
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.9e-12 75.5 54 75.9
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.9e-12 75.5 54 75.9
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.9e-12 75.5 54 75.9
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.9e-12 75.5 54 75.9
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.9e-12 75.5 54 75.9
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 1.9e-12 75.5 54 75.9
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.9e-12 75.5 54 75.9
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 2.5e-12 75.1 54 72.2
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 3.2e-12 74.7 54 72.2
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 3.2e-12 74.7 53 75.5
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 3.2e-12 74.7 53 77.4
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 5.5e-12 73.9 54 70.4
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.5e-12 73.9 54 72.2
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 5.5e-12 73.9 54 70.4
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 2.1e-11 72.0 54 74.1
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.1e-11 72.0 55 70.9
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 2.1e-11 72.0 58 70.7
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 4.6e-11 70.9 54 72.2
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 7.9e-11 70.1 54 72.2
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.0e-10 69.7 52 73.1
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 3.0e-10 68.2 51 74.5
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 3.9e-10 67.8 54 63.0
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.9e-10 67.8 53 66.0
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 1.1e-07 59.7 54 59.3
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-07 58.2 54 63.0
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.9e-06 53.9 57 56.1


User provided reference genes

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