Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.9e-160 569.3 323 100.0
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.9e-144 516.2 325 92.0
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 7.1e-144 514.2 326 91.7
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.2e-143 513.5 328 91.2
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.1e-143 512.7 326 91.4
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.5e-141 506.5 327 90.5
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 1.5e-133 479.9 326 86.5
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 3.1e-131 472.2 327 85.3
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.2e-122 443.7 325 80.0
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 6.5e-121 438.0 325 79.1
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 4.2e-120 435.3 328 79.3
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.6e-119 433.3 330 79.4
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 3.6e-119 432.2 328 78.4
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 4.6e-119 431.8 328 77.7
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 6.1e-119 431.4 328 79.6
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 1.8e-118 429.9 325 78.8
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 3.0e-118 429.1 325 80.0
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.5e-117 426.8 328 80.2
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 4.4e-117 425.2 326 79.8
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 5.7e-117 424.9 328 77.1
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 1.7e-116 423.3 325 78.5
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.4e-115 419.5 334 78.1
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.1e-115 418.7 325 79.7
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 4.1e-115 418.7 325 79.7
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 6.9e-115 417.9 330 75.8
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 6.9e-115 417.9 331 76.4
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 9.1e-115 417.5 328 76.2
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 2.0e-114 416.4 330 76.7
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 3.4e-114 415.6 334 75.4
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 5.9e-114 414.8 335 76.7
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 1.0e-113 414.1 325 75.1
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 1.0e-113 414.1 326 75.8
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 1.0e-113 414.1 325 75.1
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.3e-113 413.7 333 75.1
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 3.8e-113 412.1 334 74.0
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 3.8e-113 412.1 327 75.8
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 3.8e-113 412.1 329 75.4
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 5.0e-113 411.8 326 75.2
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 5.0e-113 411.8 326 75.2
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.1e-112 410.6 330 75.5
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 1.9e-112 409.8 331 74.3
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 4.2e-112 408.7 327 74.9
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 5.5e-112 408.3 329 75.1
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.2e-111 407.1 326 74.5
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 2.1e-111 406.4 364 69.0
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 2.7e-111 406.0 331 75.8
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 2.7e-111 406.0 309 79.0
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 2.7e-111 406.0 329 74.5
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 4.7e-111 405.2 326 73.6
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 7.9e-111 404.4 328 75.0
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.8e-110 403.3 337 73.0
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 2.3e-110 402.9 324 75.3
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 3.0e-110 402.5 328 74.7
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 6.7e-110 401.4 343 72.3
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 8.8e-110 401.0 327 71.9
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 2.0e-109 399.8 331 72.2
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 7.4e-109 397.9 328 73.2
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 7.4e-109 397.9 330 73.0
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 7.4e-109 397.9 327 75.2
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 9.7e-109 397.5 325 72.6
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 9.7e-109 397.5 328 72.6
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 9.7e-109 397.5 329 72.6
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.7e-108 396.7 325 72.6
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 1.7e-108 396.7 325 73.2
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 3.7e-108 395.6 328 71.6
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.7e-108 395.6 325 73.2
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 4.8e-108 395.2 332 74.7
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 6.3e-108 394.8 325 71.7
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 6.3e-108 394.8 328 72.6
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 6.3e-108 394.8 338 69.2
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 1.1e-107 394.0 330 71.2
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.4e-107 393.7 326 72.1
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.4e-107 393.7 334 71.6
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.8e-107 393.3 328 71.3
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 4.1e-107 392.1 323 73.4
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 4.1e-107 392.1 324 74.7
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 7.0e-107 391.3 326 71.8
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 9.1e-107 391.0 330 71.5
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 9.1e-107 391.0 325 72.9
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.2e-106 390.6 332 71.7
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.6e-106 390.2 323 72.1
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.6e-106 390.2 323 72.1
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.0e-106 389.8 328 71.3
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 2.0e-106 389.8 329 71.1
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.6e-106 389.4 325 72.3
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 3.5e-106 389.0 328 71.0
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 5.9e-106 388.3 325 71.1
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.0e-105 387.5 324 72.2
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.3e-105 387.1 325 72.3
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 1.3e-105 387.1 324 71.9
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 1.3e-105 387.1 337 69.7
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 1.7e-105 386.7 332 70.2
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.2e-105 386.3 326 70.9
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 3.8e-105 385.6 321 72.6
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 3.8e-105 385.6 322 71.1
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 3.8e-105 385.6 328 72.0
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 5.0e-105 385.2 322 71.1
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 5.0e-105 385.2 322 71.1
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 5.0e-105 385.2 330 70.3
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 5.0e-105 385.2 332 70.2
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 8.5e-105 384.4 321 72.0
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 8.5e-105 384.4 327 72.2
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 8.5e-105 384.4 331 70.4
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 8.5e-105 384.4 325 70.8
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 1.1e-104 384.0 328 70.4
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.5e-104 383.6 327 70.3
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.9e-104 383.3 284 77.1
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 3.2e-104 382.5 320 70.9
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 4.2e-104 382.1 323 71.8
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 4.2e-104 382.1 329 71.4
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 7.2e-104 381.3 323 69.3
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 9.4e-104 380.9 332 71.1
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.2e-103 380.6 313 73.5
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.6e-103 380.2 259 84.2
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.6e-103 380.2 327 71.3
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 1.6e-103 380.2 326 70.9
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.1e-103 379.8 324 69.8
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 3.6e-103 379.0 327 70.3
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 4.7e-103 378.6 381 64.6
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 8.0e-103 377.9 329 68.7
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.3e-102 376.3 328 69.8
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 3.0e-102 375.9 271 79.3
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 3.3e-101 372.5 331 69.2
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 5.7e-101 371.7 330 69.4
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 2.2e-100 369.8 329 69.9
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 3.1e-99 365.9 305 74.1
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.0e-98 363.2 308 64.6
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.7e-98 362.8 255 71.8
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.3e-97 360.5 302 73.5
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.3e-97 360.5 294 73.1
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 1.7e-97 360.1 260 81.2
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 2.2e-97 359.8 314 69.7
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.5e-96 357.1 301 71.8
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 4.2e-96 355.5 273 73.6
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 7.2e-96 354.8 307 73.6
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.6e-95 353.6 299 72.6
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 4.4e-93 345.5 275 71.3
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 9.8e-93 344.4 312 67.9
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.3e-92 344.0 299 70.9
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.8e-92 342.0 231 86.6
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.8e-91 340.1 334 65.3
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 4.1e-91 339.0 231 84.0
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.2e-90 337.4 310 66.1
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 6.5e-89 331.6 318 63.8
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.1e-87 326.6 226 84.5
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.8e-83 313.5 276 66.7
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.2e-82 310.8 324 53.7
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 2.0e-82 310.1 252 67.9
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 8.6e-81 304.7 326 62.6
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 8.6e-81 304.7 326 62.6
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 2.8e-79 299.7 253 61.7
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 4.7e-79 298.9 316 57.3
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 1.8e-78 297.0 358 56.1
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 9.8e-77 291.2 250 59.2
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 5.6e-72 275.4 238 76.5
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.6e-71 273.9 257 69.6
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 5.2e-70 268.9 251 69.7
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 2.0e-69 266.9 196 81.1
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 8.3e-68 261.5 249 71.5
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.2e-66 257.7 284 52.8
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 4.1e-59 232.6 273 45.4
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 7.6e-53 211.8 304 46.4
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 2.9e-52 209.9 146 71.2
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.6e-50 204.1 124 80.6
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.0e-49 199.9 125 77.6
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 3.4e-45 186.4 146 65.8
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.4e-43 180.3 134 78.4
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 2.3e-41 173.7 193 66.3
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.5e-40 171.0 214 60.7
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.5e-32 144.4 261 39.1
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 2.1e-31 140.6 125 65.6
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 3.7e-31 139.8 93 73.1
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 6.9e-30 135.6 81 77.8
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.4e-27 127.9 107 70.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 4.3e-24 116.3 85 67.1
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 7.9e-18 95.5 107 67.3
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 1.8e-17 94.4 158 53.2
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 8.2e-15 85.5 157 51.6
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.8e-14 84.3 83 77.1
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 1.7e-12 77.8 121 43.0
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.4e-11 74.7 93 46.2
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 8.2e-07 58.9 125 29.6


User provided reference genes

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