Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 8.1e-274 946.4 468 100.0
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 3.1e-241 838.2 472 89.2
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 2.5e-222 775.4 475 81.7
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 3.1e-217 758.4 475 80.0
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 5.8e-203 711.1 472 75.0
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 1.7e-202 709.5 478 74.7
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 6.6e-199 697.6 479 72.9
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 8.6e-199 697.2 470 73.8
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 4.3e-198 694.9 477 73.6
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 2.8e-197 692.2 477 71.5
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 2.8e-197 692.2 482 71.6
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 3.6e-197 691.8 478 70.9
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 3.6e-197 691.8 480 71.9
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 4.7e-197 691.4 473 73.2
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 6.2e-197 691.0 487 71.3
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 1.2e-195 686.8 474 70.9
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 1.2e-195 686.8 477 71.5
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.2e-192 676.8 477 71.3
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 1.3e-191 673.3 473 70.2
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.3e-191 672.5 478 70.9
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 5.6e-190 667.9 478 69.9
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 1.6e-189 666.4 477 69.4
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 2.8e-189 665.6 469 71.6
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 3.6e-189 665.2 476 69.3
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 5.2e-188 661.4 469 69.5
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 1.2e-187 660.2 483 67.3
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 2.6e-187 659.1 480 68.1
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 2.6e-187 659.1 474 67.5
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 5.8e-187 657.9 477 69.8
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 7.5e-187 657.5 468 70.3
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 9.9e-187 657.1 469 69.1
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 9.9e-187 657.1 474 67.1
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 1.7e-186 656.4 474 67.5
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 1.4e-185 653.3 471 68.8
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 1.4e-185 653.3 472 68.2
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 2.4e-185 652.5 473 68.1
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 1.6e-184 649.8 470 69.1
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 1.6e-184 649.8 468 68.8
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 2.1e-184 649.4 474 67.9
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 2.7e-184 649.0 479 68.1
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 2.7e-184 649.0 474 67.5
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 3.5e-184 648.7 477 68.1
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 7.8e-184 647.5 479 67.4
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 7.8e-184 647.5 473 67.4
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 1.0e-183 647.1 473 68.5
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 2.3e-183 646.0 472 67.2
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 3.0e-183 645.6 491 65.8
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 3.9e-183 645.2 474 68.6
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 6.6e-183 644.4 473 68.3
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 6.6e-183 644.4 474 67.9
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 1.9e-182 642.9 485 66.4
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 2.5e-182 642.5 473 68.1
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 1.2e-181 640.2 479 66.6
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 1.6e-181 639.8 485 66.2
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 1.8e-180 636.3 484 65.1
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 2.4e-180 636.0 483 65.8
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 3.1e-180 635.6 482 66.8
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 6.8e-180 634.4 481 65.5
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 2.0e-179 632.9 480 65.8
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 1.3e-178 630.2 483 65.0
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 1.7e-178 629.8 483 65.4
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 1.1e-177 627.1 485 64.7
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 3.2e-177 625.5 474 64.3
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 3.2e-177 625.5 472 65.9
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 4.2e-177 625.2 483 65.0
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 9.2e-177 624.0 483 65.0
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 3.5e-176 622.1 485 64.7
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 3.5e-176 622.1 447 67.1
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 4.6e-176 621.7 485 64.7
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 6.6e-175 617.8 478 65.1
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 8.7e-175 617.5 382 82.2
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 2.5e-174 615.9 474 65.0
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 5.6e-174 614.8 474 63.5
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 1.9e-166 589.7 476 63.2
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 4.3e-166 588.6 474 63.3
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 2.1e-165 586.3 497 62.6
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 3.2e-161 572.4 481 61.3
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 7.9e-160 567.8 474 60.3
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 4.3e-158 562.0 493 60.0
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 1.4e-156 557.0 448 63.2
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 2.4e-156 556.2 479 59.7
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 1.2e-155 553.9 432 63.0
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 3.0e-151 539.3 374 70.6
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 4.3e-142 508.8 319 78.1
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 7.4e-142 508.1 338 73.1
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 1.1e-140 504.2 384 64.1
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 2.6e-139 499.6 462 54.1
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 6.5e-130 468.4 316 71.2
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 7.2e-129 464.9 422 51.9
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 9.1e-124 448.0 467 48.2
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 4.0e-111 406.0 428 50.0
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.0e-102 377.1 255 72.5
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 2.9e-98 363.2 396 47.2
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 1.1e-97 361.3 274 67.9
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 6.1e-96 355.5 269 68.0
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 8.0e-96 355.1 361 52.4
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 1.5e-94 350.9 401 44.6
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 5.7e-94 349.0 435 43.0
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 3.5e-91 339.7 259 65.6
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 4.6e-91 339.3 299 57.9
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 1.3e-90 337.8 397 43.8
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 6.6e-90 335.5 239 68.2
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 9.5e-89 331.6 319 55.5
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 4.0e-87 326.2 455 41.5
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 5.8e-78 295.8 204 75.0
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 3.9e-74 283.1 246 59.8
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 3.9e-74 283.1 210 63.3
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 1.3e-61 241.5 236 55.5
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 1.3e-58 231.5 176 62.5
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 1.2e-54 218.4 187 63.1
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 4.3e-49 199.9 118 76.3
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 9.0e-47 192.2 118 74.6
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 5.1e-42 176.4 116 75.0
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 1.4e-36 158.3 108 75.9
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 1.1e-28 132.1 100 67.0
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 1.3e-26 125.2 117 57.3
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 5.3e-15 86.7 200 34.5
MD06G1154400 Malus domestica HOM05D006543 ORTHO05D008308 1.2e-14 85.5 200 34.5
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 1.0e-10 72.4 44 77.3
MD06G1157100 Malus domestica HOM05D006543 ORTHO05D008308 2.6e-09 67.8 70 52.9
Actinidia26749 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.4e-07 62.0 47 63.8
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 4.1e-07 60.5 33 78.8
C09p09270 Brassica napus HOM05D039327 ORTHO05D041005 3.5e-06 57.4 52 59.6
BolC9t53840H Brassica oleracea HOM05D039327 ORTHO05D041005 3.5e-06 57.4 52 59.6


User provided reference genes

Program Settings