Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0182321 Rosa chinensis HOM05D000747 ORTHO05D025146 1.3e-106 389.8 203 100.0
RcHm_v2.0_Chr4g0387901 Rosa chinensis HOM05D000747 ORTHO05D025146 1.1e-70 270.4 147 98.0
FAN21G2236 Fragaria x ananassa HOM05D000747 ORTHO05D001683 2.4e-49 199.5 160 71.9
FAN25G0789 Fragaria x ananassa HOM05D000747 ORTHO05D001683 3.2e-49 199.1 160 71.9
FvH4_3g42950 Fragaria vesca HOM05D000747 ORTHO05D001683 4.6e-48 195.3 160 71.2
RcHm_v2.0_Chr5g0077001 Rosa chinensis HOM05D000747 ORTHO05D001683 9.6e-46 187.6 160 68.1
Prupe.6G024400 Prunus persica HOM05D000747 ORTHO05D001683 5.8e-43 178.3 160 65.0
MD11G1031000 Malus domestica HOM05D000747 ORTHO05D001683 2.2e-42 176.4 160 64.4
MD03G1027100 Malus domestica HOM05D000747 ORTHO05D001683 7.1e-41 171.4 191 55.5
CiPaw.11G204500 Carya illinoinensis HOM05D000747 ORTHO05D001683 5.3e-36 155.2 157 58.6
Haze_09836 Corylus avellana HOM05D000747 ORTHO05D001683 6.9e-36 154.8 160 57.5
Cfa016908 Carpinus fangiana HOM05D000747 ORTHO05D001683 1.2e-35 154.1 160 57.5
QL08p003927 Quercus lobata HOM05D000747 ORTHO05D001683 2.6e-35 152.9 160 56.2
Ciclev10007219m.g Citrus clementina HOM05D000747 ORTHO05D001683 2.9e-34 149.4 160 57.5
CiPaw.12G138800 Carya illinoinensis HOM05D000747 ORTHO05D001683 1.4e-33 147.1 160 55.0
Nn1g03156 Nelumbo nucifera HOM05D000747 ORTHO05D001683 9.3e-33 144.4 160 56.2
Dinv40863 Davidia involucrata HOM05D000747 ORTHO05D001683 1.6e-32 143.7 160 53.8
Potri.001G368600 Populus trichocarpa HOM05D000747 ORTHO05D001683 4.6e-32 142.1 157 56.1
CANSAT11G0765 Cannabis sativa HOM05D000747 ORTHO05D001683 6.0e-32 141.7 191 49.2
MELO3C014115.2 Cucumis melo HOM05D000747 ORTHO05D001683 1.0e-31 141.0 161 56.5
Sabra16G0241700 Salix brachista HOM05D000747 ORTHO05D001683 1.8e-31 140.2 157 56.1
Oeu005482.1 Olea europaea HOM05D000747 ORTHO05D001683 1.1e-30 137.5 160 51.9
ClCG10G004420 Citrullus lanatus HOM05D000747 ORTHO05D001683 1.9e-30 136.7 161 55.3
Oeu005956.1 Olea europaea HOM05D000747 ORTHO05D001683 5.7e-30 135.2 160 51.2
Rhsim04G0012200 Rhododendron simsii HOM05D000747 ORTHO05D001683 9.6e-30 134.4 160 50.6
Sed0017501 Sechium edule HOM05D000747 ORTHO05D001683 9.6e-30 134.4 161 53.4
Potri.011G094100 Populus trichocarpa HOM05D000747 ORTHO05D001683 1.3e-29 134.0 160 52.5
Nn1g07530 Nelumbo nucifera HOM05D000747 ORTHO05D001683 1.6e-29 133.7 157 55.4
Lj4g0006906 Lotus japonicus HOM05D000747 ORTHO05D001683 2.8e-29 132.9 160 50.0
CsaV3_3G004200 Cucumis sativus L. HOM05D000747 ORTHO05D001683 4.8e-29 132.1 161 54.7
Manes.15G059000 Manihot esculenta HOM05D000747 ORTHO05D001683 4.8e-29 132.1 208 45.7
CSS0022525 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.1e-28 131.0 160 50.6
Gohir.D01G062300 Gossypium hirsutum HOM05D000747 ORTHO05D001683 1.4e-28 130.6 160 51.2
Gorai.002G100900 Gossypium raimondii HOM05D000747 ORTHO05D001683 1.4e-28 130.6 160 51.2
Thecc.07G012100 Theobroma cacao HOM05D000747 ORTHO05D001683 1.4e-28 130.6 160 52.5
TAR626G0075 Trochodendron aralioides HOM05D000747 ORTHO05D001683 1.4e-28 130.6 157 52.9
Gohir.A01G092100 Gossypium hirsutum HOM05D000747 ORTHO05D001683 1.8e-28 130.2 160 51.9
Glyma.05G133100 Glycine max HOM05D000747 ORTHO05D001683 9.0e-28 127.9 160 48.8
TAR624G0765 Trochodendron aralioides HOM05D000747 ORTHO05D001683 9.0e-28 127.9 157 50.3
Duzib268G0898 Durio zibethinus HOM05D000747 ORTHO05D001683 1.5e-27 127.1 160 51.2
Glyma.08G087600 Glycine max HOM05D000747 ORTHO05D001683 1.5e-27 127.1 160 48.8
vmacro09645 Vaccinium macrocarpon HOM05D000747 ORTHO05D001683 2.0e-27 126.7 160 48.8
Nitab4.5_0007779g0030 Nicotiana tabacum HOM05D000747 ORTHO05D001683 3.4e-27 125.9 160 48.1
COL.COLO4_09844 Corchorus olitorius HOM05D000747 ORTHO05D001683 4.5e-27 125.6 160 52.5
Lalb_Chr12g0209101 Lupinus albus HOM05D000747 ORTHO05D001683 4.5e-27 125.6 160 49.4
Ca_18244_v3 Cicer arietinum L. HOM05D000747 ORTHO05D001683 7.6e-27 124.8 160 47.5
Lj3C755T2 Lonicera japonica HOM05D000747 ORTHO05D001683 1.0e-26 124.4 161 49.7
TPR.G31239 Trifolium pratense HOM05D000747 ORTHO05D001683 1.3e-26 124.0 157 49.0
TWI38G1048 Tripterygium wilfordii HOM05D000747 ORTHO05D001683 1.3e-26 124.0 160 51.2
Eucgr.F02042 Eucalyptus grandis HOM05D000747 ORTHO05D001683 1.7e-26 123.6 158 49.4
Medtr4g094708 Medicago truncatula HOM05D000747 ORTHO05D001683 1.7e-26 123.6 157 49.0
Duzib213G0084 Durio zibethinus HOM05D000747 ORTHO05D001683 2.2e-26 123.2 160 50.0
Phvul.002G189700 Phaseolus vulgaris HOM05D000747 ORTHO05D001683 2.9e-26 122.9 160 48.1
Nitab4.5_0004583g0110 Nicotiana tabacum HOM05D000747 ORTHO05D001683 3.8e-26 122.5 160 48.1
Actinidia35404 Actinidia chinensis HOM05D000747 ORTHO05D001683 8.4e-26 121.3 162 45.1
Lalb_Chr07g0188331 Lupinus albus HOM05D000747 ORTHO05D001683 8.4e-26 121.3 157 49.0
Lj1C891T9 Lonicera japonica HOM05D000747 ORTHO05D001683 1.1e-25 120.9 195 44.1
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.4e-25 120.6 160 47.5
CSS0037654 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.4e-25 120.6 160 47.5
PSO541G0267 Papaver somniferum HOM05D000747 ORTHO05D001683 1.4e-25 120.6 160 46.9
Solyc07g065630.4 Solanum lycopersicum HOM05D000747 ORTHO05D001683 1.4e-25 120.6 160 46.9
PSO675G3434 Papaver somniferum HOM05D000747 ORTHO05D001683 3.2e-25 119.4 160 46.2
Peaxi162Scf00139g00125 Petunia axillaris HOM05D000747 ORTHO05D001683 3.2e-25 119.4 160 46.2
Psat7g085720 Pisum sativum HOM05D000747 ORTHO05D001683 3.2e-25 119.4 157 48.4
Actinidia37150 Actinidia chinensis HOM05D000747 ORTHO05D001683 4.2e-25 119.0 160 45.6
MSTRG.7001 Avicennia marina HOM05D000747 ORTHO05D001683 4.2e-25 119.0 160 46.2
Cc05_g15020 Coffea canephora HOM05D000747 ORTHO05D001683 5.5e-25 118.6 160 45.6
Psat0s2502g0120 Pisum sativum HOM05D000747 ORTHO05D001683 7.2e-25 118.2 157 49.7
CAN.G623.17 Capsicum annuum HOM05D000747 ORTHO05D001683 2.1e-24 116.7 160 47.5
Sopen07g033840 Solanum pennellii HOM05D000747 ORTHO05D001683 2.1e-24 116.7 160 46.2
arahy.Tifrunner.gnm1.ann1.7NI5NY Arachis hypogaea HOM05D000747 ORTHO05D001683 2.7e-24 116.3 160 46.2
TWI38G2292 Tripterygium wilfordii HOM05D000747 ORTHO05D001683 2.7e-24 116.3 160 49.4
arahy.Tifrunner.gnm1.ann1.62V247 Arachis hypogaea HOM05D000747 ORTHO05D001683 1.8e-23 113.6 160 45.0
SalBow8G3694 Salvia bowleyana HOM05D000747 ORTHO05D001683 1.8e-23 113.6 160 44.4
SalBow8G4314 Salvia bowleyana HOM05D000747 ORTHO05D001683 3.9e-23 112.5 160 44.4
Migut.M01647 Erythranthe guttata HOM05D000747 ORTHO05D001683 5.1e-23 112.1 160 45.0
Hund23101 Selenicereus undatus HOM05D000747 ORTHO05D001683 5.1e-23 112.1 160 47.5
SGA_v2.0_scaffold171G38855 Striga asiatica HOM05D000747 ORTHO05D001683 4.3e-22 109.0 160 45.0
unitig_62.g23303 Utricularia gibba HOM05D000747 ORTHO05D001683 9.7e-22 107.8 168 44.0
Ah.06g181550 Amaranthus hybridus HOM05D000747 ORTHO05D001683 1.6e-21 107.1 181 40.9
PGR083G1157 Punica granatum HOM05D000747 ORTHO05D001683 6.3e-21 105.1 173 46.2
Medtr4g094705 Medicago truncatula HOM05D000747 ORTHO05D001683 8.2e-21 104.8 191 41.4
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 1.4e-20 104.0 173 41.6
AUR62017118 Chenopodium quinoa HOM05D000747 ORTHO05D001683 1.4e-20 104.0 160 45.0
DCAR_017075 Daucus carota HOM05D000747 ORTHO05D001683 2.4e-20 103.2 174 42.0
HPP92_026406 Vanilla planifolia HOM05D000747 ORTHO05D001683 3.1e-20 102.8 160 41.9
AUR62036471 Chenopodium quinoa HOM05D000747 ORTHO05D001683 4.1e-20 102.4 160 45.0
SGA_v2.0_scaffold168G38567 Striga asiatica HOM05D000747 ORTHO05D001683 5.3e-20 102.1 161 46.0
Ca_18240_v3 Cicer arietinum L. HOM05D000747 ORTHO05D001683 1.2e-19 100.9 160 42.5
AL1G63980 Arabidopsis lyrata HOM05D000747 ORTHO05D001683 3.4e-19 99.4 159 42.8
Lsat_1_v5_gn_9_88720 Lactuca sativa HOM05D000747 ORTHO05D001683 4.5e-19 99.0 157 43.9
AT1G55860 Arabidopsis thaliana HOM05D000747 ORTHO05D001683 7.7e-19 98.2 159 42.8
EL10Ac4g07551 Beta vulgaris HOM05D000747 ORTHO05D001683 1.7e-18 97.1 160 42.5
AT1G70320 Arabidopsis thaliana HOM05D000747 ORTHO05D001683 2.2e-18 96.7 159 42.1
ECA240G4674 Erigeron canadensis HOM05D000747 ORTHO05D001683 2.2e-18 96.7 157 45.2
SEGI_19221 Sequoiadendron giganteum HOM05D000747 ORTHO05D001683 2.9e-18 96.3 160 43.8
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 8.5e-18 94.7 173 39.9
Thhalv10011172m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 8.5e-18 94.7 173 39.9
THA.LOC104815693 Tarenaya hassleriana HOM05D000747 ORTHO05D001683 8.5e-18 94.7 159 41.5
Sp1g41460 Schrenkiella parvula HOM05D000747 ORTHO05D001683 1.1e-17 94.4 159 40.9
Os09g0252700 Oryza sativa ssp. japonica HOM05D000747 ORTHO05D001683 2.5e-17 93.2 161 42.2
Sc03g0011480 Simmondsia chinensis HOM05D000747 ORTHO05D001683 3.2e-17 92.8 191 39.8
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 9.4e-17 91.3 159 39.6
HanXRQChr03g0073991 Helianthus annuus HOM05D000747 ORTHO05D001683 9.4e-17 91.3 157 42.7
HanXRQChr13g0408401 Helianthus annuus HOM05D000747 ORTHO05D001683 9.4e-17 91.3 195 37.4
BcaB05g23932 Brassica carinata HOM05D000747 ORTHO05D001683 3.6e-16 89.4 160 40.6
Atru.chr2.3698 Acer truncatum HOM05D000747 ORTHO05D001683 7.9e-16 88.2 82 62.2
BraSC56t46399Z Brassica rapa HOM05D000747 ORTHO05D001683 1.0e-15 87.8 159 39.6
Dinv10343 Davidia involucrata HOM05D000747 ORTHO05D001683 5.7e-14 82.0 178 36.0
Mapoly0090s0059 Marchantia polymorpha HOM05D000747 ORTHO05D001683 6.3e-13 78.6 167 34.1
THA.LOC104822729 Tarenaya hassleriana HOM05D000747 ORTHO05D001683 2.4e-12 76.6 160 38.8
Zm00001eb094520 Zea mays HOM05D000747 ORTHO05D001683 2.4e-12 76.6 170 37.1
FvH4_4g15871 Fragaria vesca HOM05D049373 ORTHO05D045624 1.2e-11 74.3 115 45.2
HPP92_023769 Vanilla planifolia HOM05D000747 ORTHO05D001683 1.5e-11 73.9 109 39.4
GSVIVG01014697001 Vitis vinifera HOM05D000747 ORTHO05D001683 1.1e-09 67.8 114 43.0
RcHm_v2.0_Chr1g0363301 Rosa chinensis HOM05D000673 ORTHO05D037482 1.9e-09 67.0 66 56.1
RcHm_v2.0_Chr4g0387101 Rosa chinensis HOM05D000109 ORTHO05D348560 1.9e-09 67.0 66 56.1
Pp3c11_25020 Physcomitrium patens HOM05D000747 ORTHO05D001683 9.4e-09 64.7 167 32.3
ECA236G3808 Erigeron canadensis HOM05D000747 ORTHO05D001683 6.1e-08 62.0 144 35.4


User provided reference genes

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