Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 2.3e-246 855.1 428 100.0
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 4.4e-234 814.3 432 94.7
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 5.8e-234 813.9 432 94.4
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 4.1e-232 807.7 432 93.8
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 5.4e-232 807.4 432 94.0
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 5.4e-224 780.8 428 91.4
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 3.1e-219 765.0 428 88.6
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 6.8e-219 763.8 428 89.0
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 1.1e-216 756.5 428 88.3
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 1.5e-213 746.1 428 86.7
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 2.8e-212 741.9 428 86.7
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 8.1e-212 740.3 429 86.9
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 1.4e-211 739.6 429 86.9
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 5.2e-211 737.6 430 86.3
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.5e-210 736.1 429 86.2
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 5.8e-210 734.2 428 86.0
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 9.9e-210 733.4 430 85.8
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 9.9e-210 733.4 429 86.0
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.7e-209 732.6 428 85.0
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 3.8e-209 731.5 428 85.5
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 6.4e-209 730.7 430 85.8
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 2.4e-208 728.8 429 85.5
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 4.2e-208 728.0 428 84.6
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 4.2e-208 728.0 429 85.1
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 5.4e-208 727.6 428 85.3
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 2.7e-207 725.3 428 85.0
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 4.6e-207 724.5 436 85.3
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 4.6e-207 724.5 428 85.3
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 6.0e-207 724.2 428 84.8
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 6.0e-207 724.2 428 84.8
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 7.8e-207 723.8 429 83.9
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 7.8e-207 723.8 428 84.3
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 7.8e-207 723.8 428 84.3
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.0e-206 723.4 429 84.4
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.3e-206 723.0 428 85.0
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 1.3e-206 723.0 428 84.6
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.7e-206 722.6 428 85.0
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 1.7e-206 722.6 430 84.7
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 3.0e-206 721.8 432 84.5
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 3.0e-206 721.8 432 84.7
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 5.1e-206 721.1 428 83.9
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 8.7e-206 720.3 433 84.3
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 1.1e-205 719.9 430 83.7
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 1.1e-205 719.9 433 83.8
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 1.5e-205 719.5 428 84.3
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 2.5e-205 718.8 429 84.8
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 2.5e-205 718.8 433 83.8
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 5.6e-205 717.6 432 84.3
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 6.2e-204 714.1 427 84.1
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 6.2e-204 714.1 430 83.7
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 6.2e-204 714.1 433 83.4
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 1.1e-203 713.4 431 84.2
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.8e-203 712.6 428 83.9
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 1.2e-202 709.9 401 86.8
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 2.0e-202 709.1 419 85.0
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 3.4e-202 708.4 428 84.3
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 4.5e-202 708.0 432 84.0
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 7.6e-202 707.2 379 91.3
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 7.6e-202 707.2 429 82.1
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 1.3e-201 706.4 429 81.8
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.7e-201 706.1 428 83.4
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.2e-201 705.7 428 82.2
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 2.9e-201 705.3 432 82.4
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 3.8e-201 704.9 432 82.4
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 4.9e-201 704.5 393 87.3
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 8.4e-201 703.7 417 83.5
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 1.1e-200 703.4 396 87.4
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 9.3e-200 700.3 400 86.0
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 2.1e-199 699.1 428 82.0
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 4.6e-199 698.0 397 87.2
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 4.6e-199 698.0 397 86.9
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 4.3e-197 691.4 368 92.4
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 9.6e-197 690.3 427 81.0
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 1.3e-196 689.9 416 82.5
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 1.4e-195 686.4 401 83.8
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 2.4e-195 685.6 368 90.5
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 2.4e-195 685.6 430 79.1
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 2.4e-195 685.6 428 80.6
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 3.1e-195 685.3 396 86.9
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 9.0e-195 683.7 399 83.5
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 1.2e-194 683.3 430 80.2
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 7.6e-194 680.6 434 78.8
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 7.6e-194 680.6 399 83.2
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 1.3e-193 679.9 391 84.4
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 2.2e-193 679.1 400 83.0
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 1.4e-192 676.4 434 78.3
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 1.9e-192 676.0 399 83.0
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 1.9e-192 676.0 433 78.1
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 3.2e-192 675.2 398 84.7
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 3.2e-192 675.2 432 78.5
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 5.5e-192 674.5 435 78.9
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 7.1e-192 674.1 433 78.3
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 1.6e-191 672.9 433 79.4
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 2.1e-191 672.5 448 76.8
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 2.7e-191 672.2 433 79.0
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 4.6e-191 671.4 408 81.9
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 7.9e-191 670.6 399 82.5
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 7.9e-191 670.6 399 82.2
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 1.3e-190 669.8 433 78.8
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 3.0e-190 668.7 416 79.6
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 3.3e-189 665.2 397 82.6
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 7.4e-189 664.1 433 78.3
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 9.6e-189 663.7 440 78.0
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.5e-186 656.4 435 77.7
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 2.2e-185 652.5 496 69.6
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 2.2e-185 652.5 379 86.0
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.2e-185 652.5 435 77.2
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 9.3e-184 647.1 368 86.7
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 2.6e-178 629.0 432 73.6
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 3.4e-178 628.6 387 76.7
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 5.9e-178 627.9 380 82.6
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 6.7e-174 614.4 388 76.0
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 8.8e-174 614.0 391 76.7
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 3.3e-173 612.1 411 73.0
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 7.2e-160 567.8 378 70.9
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.7e-159 565.8 346 85.0
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 3.9e-158 562.0 389 74.3
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 5.2e-158 561.6 336 80.1
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 6.7e-158 561.2 378 70.9
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 2.6e-157 559.3 386 73.3
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.1e-152 543.9 369 71.5
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 5.9e-146 521.5 378 66.4
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 2.8e-140 502.7 288 85.1
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 2.9e-129 466.1 299 77.6
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 5.0e-129 465.3 408 60.8
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.6e-114 417.2 267 80.5
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 1.1e-107 394.4 280 74.3
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 2.8e-71 273.5 334 43.4
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 5.3e-70 269.2 334 43.1
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 3.8e-68 263.1 185 76.2
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 3.4e-53 213.4 118 87.3
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 2.0e-48 197.6 107 86.9
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 1.2e-34 151.8 84 84.5
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 7.5e-32 142.5 84 81.0
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 1.4e-30 138.3 84 77.4
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 1.3e-28 131.7 125 60.8
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 2.2e-23 114.4 79 72.2
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 2.2e-23 114.4 74 77.0
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 3.7e-23 113.6 57 86.0
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.0e-16 91.3 195 33.3
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 5.7e-16 89.7 58 81.0
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 3.1e-09 67.4 66 56.1
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 3.1e-09 67.4 40 70.0
BolC3t17202H Brassica oleracea HOM05D000003 ORTHO05D001498 3.2e-06 57.4 41 63.4


User provided reference genes

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