Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 3550.4 1961 100.0
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 3201.8 1964 91.0
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 3200.2 1964 91.1
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 3185.6 1964 90.1
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2989.9 1964 85.8
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2911.3 1925 83.2
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2789.6 1922 80.4
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2763.4 1924 79.6
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2616.6 1942 74.3
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2600.1 1943 74.4
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2576.6 1937 73.5
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2575.8 1961 73.7
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2554.6 1949 73.3
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2525.0 1930 73.1
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2519.2 1941 72.9
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2510.3 1941 72.7
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2493.4 1799 73.9
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2493.4 1864 72.9
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2491.1 1936 72.6
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2484.1 1942 72.3
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2478.0 1944 72.4
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2470.3 1907 73.3
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2470.3 1931 72.4
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2443.7 1939 71.1
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2442.2 1944 70.9
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2436.0 1971 70.4
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2427.5 1946 69.9
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2423.3 1943 71.1
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2422.9 1778 73.4
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2419.4 1955 69.8
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2414.8 1940 70.4
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2405.2 1931 70.8
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2399.4 1940 70.7
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2391.7 1949 70.3
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2391.7 1827 71.4
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2388.6 1958 70.1
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2384.4 2047 66.8
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2375.1 1980 68.3
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2372.0 1929 69.3
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2357.8 1886 70.9
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2342.8 1821 69.9
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2334.7 1828 69.2
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2333.5 1930 69.7
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2323.9 1939 68.2
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2319.3 1943 67.0
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2297.7 1937 68.6
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2295.8 1825 68.8
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2286.9 1941 66.6
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2285.4 1935 68.7
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2283.8 1930 67.7
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2280.8 1868 68.3
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2270.0 1931 67.7
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2254.2 1913 68.0
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2249.6 1923 67.9
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2246.9 1952 65.9
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2237.6 1924 66.3
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2234.1 1816 67.2
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2226.1 1927 65.1
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2224.1 1922 65.8
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2221.4 1931 65.0
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2215.3 1832 67.4
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2213.3 1944 65.4
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2207.6 1868 67.2
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2203.7 1844 66.1
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2195.6 1939 66.0
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2193.3 1839 66.1
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2191.4 1832 66.2
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2189.1 1818 66.4
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2187.9 1900 66.7
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2136.3 1852 63.3
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2117.4 1828 64.2
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2107.8 1932 63.5
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2097.4 1930 63.4
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2085.1 1834 64.1
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 2075.1 1685 68.1
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2068.5 1799 64.0
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2067.0 1817 63.8
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2055.0 1850 62.3
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2049.2 1931 61.9
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2042.3 1821 61.9
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2035.4 1923 61.8
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2033.8 1908 61.3
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2026.1 1976 61.0
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1956.0 1865 60.1
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1946.4 1823 59.7
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1935.2 1929 58.1
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1931.8 1975 58.9
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1916.4 1899 58.1
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1916.4 1721 62.8
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1916.0 1895 58.4
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1911.0 1969 58.0
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1909.4 1866 58.6
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1907.1 1853 59.6
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1905.2 1970 57.9
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1904.0 1836 58.6
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1892.1 1982 57.7
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1889.0 1897 57.8
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1887.1 1848 58.1
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1879.4 1896 58.0
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1872.1 1989 57.3
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1871.3 1908 57.4
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1868.2 1990 57.2
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1868.2 1990 57.2
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1854.0 1864 57.6
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1758.8 1877 55.7
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1671.8 1951 52.4
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1639.8 1838 52.6
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1620.5 1242 70.2
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1608.6 1238 73.2
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1546.9 1941 51.6
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1546.2 1491 61.2
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1526.1 1939 49.4
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1485.7 1893 48.9
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1485.7 1893 48.9
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1478.0 1450 60.0
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1468.0 1241 68.3
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1457.2 1874 48.8
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1436.0 1857 49.9
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1382.1 1493 55.8
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1261.5 1763 45.4
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1236.5 1003 67.2
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1223.8 1344 56.5
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1220.7 924 71.6
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1114.8 1042 64.1
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 3.9e-301 1039.3 864 67.6
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 2.3e-285 986.9 1433 47.1
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 6.2e-283 978.8 1614 41.3
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.1e-275 953.7 842 66.3
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.1e-260 904.8 1827 36.7
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.8e-251 873.6 821 61.5
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 1.4e-247 861.3 846 57.2
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.3e-205 721.1 497 81.9
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.4e-202 711.1 616 67.5
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 1.5e-196 691.8 722 54.6
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 5.6e-191 673.3 656 56.6
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 2.1e-182 644.8 651 54.8
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.8e-181 641.7 502 66.5
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 2.9e-163 581.3 624 54.8
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.2e-153 549.3 450 69.3
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.0e-145 520.4 560 58.2
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.5e-138 498.4 558 57.7
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 4.8e-118 431.0 403 59.8
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 9.1e-109 400.2 1255 27.9
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.8e-88 332.8 438 47.3
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 4.1e-85 321.6 867 33.3
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.3e-83 316.6 638 35.3
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 2.0e-79 302.8 2067 22.7
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 7.8e-76 290.8 469 39.4
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 9.8e-71 273.9 392 43.9
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 8.6e-67 260.8 161 80.7
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.6e-60 238.4 363 47.1
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 4.4e-55 221.9 275 47.6
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.1e-53 217.2 201 64.7
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 2.1e-41 176.4 214 58.4
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 9.0e-40 171.0 189 70.9
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 5.6e-34 151.8 163 57.1
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 2.6e-23 116.3 168 43.5
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.1e-18 100.9 63 76.2
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.9e-18 100.1 68 69.1
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 3.8e-14 85.9 85 56.5
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 5.5e-13 82.0 52 65.4
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 1.0e-11 77.8 59 66.1
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 5.7e-10 72.0 44 75.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.7e-09 70.5 33 87.9
Cfa014748 Carpinus fangiana HOM05D000549 ORTHO05D021575 8.2e-09 68.2 47 68.1
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 6.9e-08 65.1 128 67.2
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.2e-07 64.3 49 57.1
EL10Ac7g17257 Beta vulgaris HOM05D002037 ORTHO05D021575 5.0e-06 58.9 43 62.8
Ah.04g156720 Amaranthus hybridus HOM05D002037 ORTHO05D005261 8.5e-06 58.2 39 76.9


User provided reference genes

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