Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 0.0e+00 1315.1 665 100.0
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 0.0e+00 1101.3 592 94.8
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 0.0e+00 1088.2 610 91.1
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.4e-300 1035.8 600 89.5
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.0e-297 1025.4 630 85.6
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 9.8e-257 890.2 600 77.3
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.4e-255 886.3 601 76.9
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.7e-253 879.4 600 76.8
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.4e-242 842.4 597 73.2
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 5.8e-241 837.8 578 73.9
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 6.4e-240 834.3 602 71.8
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 6.4e-240 834.3 594 72.7
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 4.1e-239 831.6 538 78.8
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 4.1e-239 831.6 610 72.1
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.4e-239 831.2 579 73.2
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.3e-237 826.6 597 72.5
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.7e-237 826.2 603 71.1
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 2.3e-237 825.9 579 74.4
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 3.0e-237 825.5 600 72.3
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 3.3e-236 822.0 537 78.2
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 4.3e-236 821.6 591 72.4
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 4.3e-236 821.6 591 72.4
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 7.3e-236 820.8 568 74.1
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 3.6e-235 818.5 555 75.0
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.8e-234 816.2 591 73.6
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 2.4e-234 815.8 572 72.7
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.0e-234 815.1 499 81.6
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 9.0e-234 813.9 579 72.7
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 5.8e-233 811.2 602 70.9
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 9.9e-233 810.4 574 73.0
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 3.8e-232 808.5 593 71.7
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 8.4e-232 807.4 539 75.3
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 9.3e-231 803.9 502 80.5
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.2e-230 803.5 583 71.9
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.6e-230 803.1 599 70.3
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 2.7e-230 802.4 536 76.3
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.3e-229 800.0 565 72.2
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.3e-229 800.0 599 69.8
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 2.3e-229 799.3 506 79.6
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.9e-229 798.5 576 72.2
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 6.6e-229 797.7 594 70.2
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 8.7e-229 797.3 506 78.7
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 4.3e-228 795.0 591 68.9
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 5.6e-228 794.7 596 69.3
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 5.6e-228 794.7 607 68.4
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 9.6e-228 793.9 534 76.2
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 2.1e-227 792.7 596 69.0
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 3.6e-227 792.0 597 69.0
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 1.1e-226 790.4 593 69.6
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 3.1e-226 788.9 503 78.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 9.0e-226 787.3 535 74.2
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 9.0e-226 787.3 596 68.5
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 9.0e-226 787.3 596 68.5
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 1.2e-225 786.9 611 67.1
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 1.5e-225 786.6 592 69.3
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 2.0e-225 786.2 536 73.5
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.0e-225 786.2 592 69.3
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 2.6e-225 785.8 598 68.9
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 3.4e-225 785.4 602 68.1
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.3e-224 783.5 596 68.1
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.7e-224 783.1 593 68.6
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 2.2e-224 782.7 592 68.2
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.9e-224 782.3 588 69.9
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 6.4e-224 781.2 551 73.7
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.1e-223 780.4 575 70.6
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.1e-223 780.4 575 70.6
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.9e-223 779.6 601 68.9
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 6.7e-221 771.2 592 68.2
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 2.5e-220 769.2 579 70.3
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.6e-219 766.5 594 68.0
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.1e-219 766.1 582 68.2
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 2.8e-219 765.8 594 68.0
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 2.8e-219 765.8 536 71.6
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 6.2e-219 764.6 516 74.8
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 9.0e-218 760.8 539 72.7
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 5.8e-217 758.1 586 67.2
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 4.6e-214 748.4 592 67.1
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.1e-212 743.8 590 65.6
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.5e-212 743.4 604 64.6
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.3e-211 740.3 589 67.6
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 3.7e-211 738.8 668 61.4
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 6.2e-211 738.0 577 67.8
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 3.1e-210 735.7 546 70.5
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 4.5e-209 731.9 513 71.0
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 5.8e-209 731.5 549 67.2
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 6.0e-206 721.5 601 65.4
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 7.9e-206 721.1 571 66.7
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 6.7e-205 718.0 614 62.9
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 7.4e-204 714.5 527 70.6
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 3.1e-202 709.1 574 65.7
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 4.1e-202 708.8 461 76.4
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 4.1e-202 708.8 602 65.4
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 5.3e-202 708.4 576 66.5
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.0e-200 701.8 596 63.4
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.4e-197 693.7 655 60.2
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.7e-192 676.8 639 60.1
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 7.9e-190 667.9 584 62.5
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.6e-185 652.9 459 71.0
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 4.5e-185 652.1 602 57.3
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.8e-181 640.2 421 77.4
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 6.3e-179 631.7 610 58.7
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 7.0e-170 601.7 388 77.1
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 9.1e-170 601.3 559 58.5
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.9e-169 598.6 523 62.3
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 7.7e-169 598.2 439 69.9
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.0e-160 568.9 527 56.4
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 1.3e-139 501.1 345 73.9
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 5.4e-138 495.7 522 52.9
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 3.4e-132 476.5 381 69.8
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.4e-132 476.5 437 54.2
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 3.5e-129 466.5 488 50.8
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 5.1e-128 462.6 512 48.4
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.5e-127 461.1 509 52.8
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 8.1e-126 455.3 460 55.2
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 3.4e-124 449.9 454 50.7
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 6.0e-121 439.1 474 50.8
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.7e-120 437.6 374 63.9
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.5e-111 407.9 266 79.7
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 9.6e-103 378.6 489 43.1
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.8e-88 331.3 282 57.4
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 6.7e-88 329.3 204 77.5
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 2.9e-75 287.3 173 79.8
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 5.0e-75 286.6 249 59.4
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.8e-72 278.1 184 75.0
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.5e-71 275.0 200 64.5
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 8.0e-65 252.7 262 48.1
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.8e-64 251.5 271 54.2
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 6.7e-64 249.6 178 70.2
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 2.6e-63 247.7 391 37.3
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.7e-62 245.0 277 48.7
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 9.8e-55 219.2 129 79.8
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.7e-52 211.1 285 43.2
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.6e-49 200.7 177 62.1
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 5.2e-48 196.8 113 82.3
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.4e-45 188.0 128 72.7
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.6e-39 167.9 276 38.0
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.3e-35 154.8 122 62.3
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 9.5e-34 149.4 106 68.9
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 4.4e-31 140.6 121 62.0
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 9.2e-29 132.9 268 33.2
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.6e-25 122.1 311 32.2
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.8e-25 121.3 95 66.3
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 6.2e-25 120.2 123 49.6
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 6.8e-24 116.7 105 54.3
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 6.8e-24 116.7 83 62.7
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 9.8e-23 112.8 228 36.0
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 2.7e-20 104.8 75 68.0
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.1e-18 99.4 56 89.3
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.6e-18 97.1 91 51.6
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.5e-18 96.3 93 50.5
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 2.1e-17 95.1 71 64.8
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 3.6e-17 94.4 57 84.2
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 3.1e-16 91.3 71 62.0
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.2e-14 85.1 55 76.4
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 2.7e-12 78.2 59 62.7
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.0e-11 74.7 248 26.2
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 6.8e-08 63.5 271 24.0
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.2e-07 62.8 36 80.6
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.5e-07 62.4 109 34.9
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.0e-07 62.0 40 77.5


User provided reference genes

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