Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 3.1e-301 1037.7 542 100.0
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.5e-242 842.0 544 80.3
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.3e-234 815.1 571 76.2
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.3e-208 728.0 579 69.9
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 3.0e-203 712.2 575 66.8
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 9.6e-202 707.2 574 65.7
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.6e-201 706.4 582 68.2
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.9e-198 694.9 593 63.9
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 1.2e-196 690.3 580 65.3
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.5e-194 683.3 582 64.9
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.3e-193 680.2 537 67.6
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.8e-192 676.4 567 67.0
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 6.9e-192 674.5 586 62.1
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 6.9e-192 674.5 540 66.3
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.9e-191 671.4 537 66.3
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 6.5e-190 667.9 537 65.7
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.9e-189 666.4 565 64.2
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.9e-189 666.4 576 62.3
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 3.2e-189 665.6 573 62.3
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.2e-188 663.7 536 65.1
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 1.6e-188 663.3 569 62.9
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.1e-188 662.9 567 64.7
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.5e-188 662.1 538 64.9
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.0e-187 660.6 537 66.9
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.3e-187 660.2 574 62.5
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.1e-187 658.3 583 62.6
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.1e-186 657.1 541 65.1
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.1e-186 657.1 476 71.0
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 1.1e-186 657.1 477 71.3
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.9e-186 656.4 578 61.4
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 2.5e-186 656.0 568 63.4
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 5.7e-186 654.8 476 69.3
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.6e-185 653.3 581 60.8
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 2.8e-185 652.5 540 65.4
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 4.8e-185 651.7 536 64.0
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 4.8e-185 651.7 564 62.1
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 2.4e-184 649.4 476 70.0
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.1e-184 649.0 478 70.1
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.1e-184 649.0 478 70.1
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 4.1e-184 648.7 560 61.2
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 3.4e-183 645.6 480 69.6
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.0e-182 641.7 611 59.6
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 5.0e-182 641.7 552 63.0
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.1e-181 640.6 479 69.7
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.4e-181 640.2 538 63.8
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 1.9e-181 639.8 476 67.2
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 9.4e-181 637.5 512 65.2
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 4.6e-180 635.2 532 63.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 7.9e-180 634.4 551 60.1
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.8e-179 633.3 539 62.2
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.8e-179 633.3 476 68.3
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.8e-179 633.3 570 58.9
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.8e-179 633.3 572 59.6
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 2.3e-179 632.9 480 67.5
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 5.1e-179 631.7 476 66.8
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 6.7e-179 631.3 578 58.5
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 6.7e-179 631.3 476 68.1
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 2.0e-178 629.8 552 60.5
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 2.5e-178 629.4 566 58.7
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 9.7e-178 627.5 576 58.0
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 9.7e-178 627.5 576 58.0
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.7e-177 626.7 476 67.6
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.2e-177 626.3 553 61.5
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 3.7e-177 625.5 584 59.2
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 3.7e-177 625.5 576 57.8
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 6.3e-177 624.8 557 59.2
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 8.2e-177 624.4 569 57.8
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 8.2e-177 624.4 552 60.9
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 8.2e-177 624.4 575 59.3
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 1.8e-176 623.2 566 58.7
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 6.9e-176 621.3 476 66.8
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 9.1e-176 620.9 480 65.4
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 9.1e-176 620.9 570 58.4
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 9.1e-176 620.9 511 63.8
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 1.5e-175 620.2 566 57.8
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.0e-175 619.8 575 58.4
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.6e-175 619.4 477 66.0
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 4.5e-175 618.6 570 58.1
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 1.7e-174 616.7 476 66.2
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.2e-174 616.3 553 58.8
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.1e-173 614.0 502 62.9
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 2.5e-173 612.8 476 64.3
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.4e-171 607.1 476 65.1
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.4e-171 607.1 476 64.7
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 6.7e-171 604.7 480 65.2
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.1e-170 604.0 558 58.2
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.8e-168 596.7 543 61.9
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.0e-166 590.9 462 66.2
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.9e-165 586.6 552 57.8
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 6.7e-163 578.2 640 52.2
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 7.5e-162 574.7 575 56.5
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 7.5e-162 574.7 476 62.8
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.7e-158 563.5 476 62.8
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 5.0e-158 562.0 528 58.3
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.5e-157 560.5 438 69.4
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 4.2e-157 558.9 514 58.9
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 9.4e-157 557.8 477 58.9
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.5e-154 550.4 476 61.1
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 9.8e-154 547.7 460 61.7
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 3.2e-149 532.7 519 56.8
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 2.1e-148 530.0 581 53.9
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 3.1e-144 516.2 480 58.5
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.2e-135 487.6 449 61.2
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 8.6e-134 481.5 427 57.6
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 4.0e-131 472.6 528 51.1
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.1e-120 438.0 390 60.3
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 3.9e-118 429.5 459 50.8
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 3.1e-115 419.9 527 47.6
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 2.0e-114 417.2 505 44.2
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 3.5e-103 379.8 346 59.8
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.5e-103 379.8 429 45.9
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 8.1e-100 368.6 360 54.4
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 2.6e-98 363.6 513 40.2
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 6.4e-97 359.0 486 41.4
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 2.1e-95 354.0 473 45.5
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.7e-89 334.3 282 59.2
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 2.9e-89 333.6 382 53.1
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.0e-87 325.9 266 66.2
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.0e-86 325.1 250 70.4
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 4.3e-85 319.7 204 73.5
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 4.8e-84 316.2 276 61.6
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 8.1e-84 315.5 457 43.3
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 9.0e-75 285.4 173 79.8
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 3.6e-71 273.5 202 64.4
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 8.5e-65 252.3 262 47.7
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 2.9e-57 227.3 394 34.8
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 9.4e-56 222.2 285 44.6
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 8.5e-49 199.1 265 45.3
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 6.1e-47 193.0 128 71.9
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 8.8e-46 189.1 177 58.8
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.7e-41 174.9 181 50.8
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 3.2e-40 170.6 274 38.3
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 1.0e-38 165.6 220 46.8
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 5.2e-38 163.3 178 50.0
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.4e-37 160.6 147 56.5
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 5.0e-33 146.7 269 34.9
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.5e-32 144.4 122 63.9
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 9.8e-29 132.5 113 58.4
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.7e-28 131.7 95 69.5
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.8e-27 128.3 313 32.6
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 5.6e-24 116.7 71 87.3
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 2.1e-23 114.8 71 85.9
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 1.2e-21 109.0 83 59.0
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 4.6e-18 97.1 56 85.7
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.3e-17 94.7 96 50.0
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 6.6e-17 93.2 96 51.0
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 8.6e-17 92.8 57 84.2
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 1.5e-16 92.0 79 51.9
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.9e-16 91.7 159 35.2
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 7.3e-16 89.7 55 80.0
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.5e-16 89.4 91 49.5
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.8e-15 87.8 248 29.8
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.0e-13 81.6 55 70.9
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 3.7e-12 77.4 73 50.7
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.1e-11 75.9 104 39.4
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 6.6e-09 66.6 59 52.5


User provided reference genes

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