Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.4e-190 669.5 335 100.0
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.1e-158 562.0 336 83.9
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.1e-158 562.0 336 83.9
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.0e-158 561.6 336 84.2
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 1.2e-154 550.1 346 80.9
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.3e-153 546.6 346 80.6
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 3.8e-140 501.9 336 76.5
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 1.4e-139 500.0 340 74.7
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 4.3e-136 488.4 342 72.2
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 1.3e-135 486.9 325 73.5
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 2.2e-135 486.1 325 76.0
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 4.1e-134 481.9 281 80.1
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 4.1e-134 481.9 324 74.7
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 4.5e-133 478.4 318 74.2
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 5.9e-133 478.0 322 72.7
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.9e-132 475.7 253 90.5
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 5.0e-132 474.9 302 75.5
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 8.5e-132 474.2 318 72.6
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 1.1e-131 473.8 331 72.8
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 1.4e-131 473.4 336 69.3
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 3.2e-131 472.2 329 71.7
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.5e-131 471.5 285 78.2
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 7.2e-131 471.1 278 79.1
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 2.1e-130 469.5 340 69.1
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 2.1e-130 469.5 294 75.9
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 2.1e-130 469.5 294 75.9
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 7.9e-130 467.6 320 72.2
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 7.9e-130 467.6 293 74.7
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.0e-129 467.2 294 75.9
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.0e-129 467.2 294 75.9
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 3.0e-129 465.7 342 68.4
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 3.0e-129 465.7 293 74.4
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.1e-128 463.8 334 69.8
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 2.0e-128 463.0 331 68.3
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 4.4e-128 461.8 322 71.4
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 7.4e-128 461.1 322 70.5
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 9.7e-128 460.7 314 72.0
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.7e-127 459.9 328 68.9
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 2.8e-127 459.1 309 72.5
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 6.3e-127 458.0 296 74.7
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 1.1e-126 457.2 312 71.5
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 1.4e-126 456.8 308 72.4
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.8e-126 456.4 306 73.9
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.8e-126 456.4 316 72.2
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 2.4e-126 456.1 322 70.8
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 1.2e-125 453.8 323 70.9
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 5.0e-124 448.4 318 69.2
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 6.5e-124 448.0 335 68.1
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 4.2e-123 445.3 319 71.2
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 5.5e-123 444.9 313 69.0
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 1.0e-121 440.7 321 70.4
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.8e-121 439.9 312 70.2
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 6.7e-121 438.0 313 68.4
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 6.7e-121 438.0 310 70.0
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 8.8e-121 437.6 324 67.3
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 1.5e-120 436.8 342 65.5
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 9.7e-120 434.1 335 66.0
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 9.7e-120 434.1 325 67.4
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.7e-119 433.3 317 69.4
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 2.2e-119 433.0 284 71.8
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 2.8e-119 432.6 313 68.1
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 6.3e-119 431.4 322 66.5
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 8.2e-119 431.0 309 69.3
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.1e-118 430.6 317 69.7
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 3.1e-118 429.1 320 65.6
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 2.6e-117 426.0 294 70.1
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.3e-116 423.7 320 65.3
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 6.5e-116 421.4 261 75.5
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 2.5e-115 419.5 317 66.2
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 9.4e-115 417.5 273 72.2
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 3.6e-114 415.6 324 66.4
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 4.4e-112 408.7 281 70.1
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 9.7e-112 407.5 248 77.0
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 9.7e-112 407.5 346 63.6
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 4.8e-111 405.2 276 69.2
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 4.8e-111 405.2 222 84.2
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 6.3e-111 404.8 225 82.2
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 6.3e-111 404.8 314 65.9
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 1.7e-108 396.7 315 64.4
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 1.1e-107 394.0 311 65.0
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 9.4e-107 391.0 345 60.6
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 3.6e-106 389.0 342 60.2
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 6.1e-106 388.3 313 62.9
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.3e-100 370.5 325 60.3
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 2.3e-100 369.8 341 58.1
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.0e-97 360.9 206 80.6
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.8e-97 360.1 225 77.3
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 6.3e-95 351.7 287 64.8
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 1.8e-94 350.1 353 53.8
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.1e-94 349.4 265 67.2
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 3.3e-91 339.3 225 69.8
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 3.3e-91 339.3 225 69.8
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 7.3e-91 338.2 333 55.9
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.6e-90 337.0 321 57.3
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 6.1e-90 335.1 260 61.9
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.4e-86 323.9 476 42.9
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 4.6e-85 318.9 259 63.3
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.2e-80 304.3 219 62.6
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 9.2e-78 294.7 265 58.9
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 4.0e-73 279.3 266 49.6
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 2.0e-72 276.9 325 50.8
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 9.9e-72 274.6 167 76.0
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 2.2e-71 273.5 216 65.7
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 1.2e-69 267.7 280 48.9
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.2e-66 255.4 220 57.7
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.3e-63 247.7 213 61.0
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 2.9e-63 246.5 255 51.4
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 4.1e-62 242.7 201 66.7
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 5.2e-57 225.7 205 50.7
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.3e-55 221.1 208 56.7
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 7.1e-54 215.3 247 50.2
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.6e-48 196.8 162 64.2
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 4.9e-39 166.0 97 77.3
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 7.9e-37 158.7 109 70.6
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 5.3e-33 146.0 357 29.4
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 8.7e-28 128.6 155 47.7
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 2.8e-26 123.6 62 88.7
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 6.1e-21 105.9 105 52.4
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 7.9e-21 105.5 149 43.0
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 6.1e-13 79.3 43 83.7
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 5.3e-09 66.2 155 34.8
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.3e-09 66.2 68 54.4
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.3e-09 66.2 68 54.4
A08p28900 Brassica napus HOM05D006408 ORTHO05D008038 2.0e-08 64.3 60 60.0
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.3e-07 61.6 60 55.0


User provided reference genes

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