Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 5.3e-72 274.2 139 100.0
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 7.5e-66 253.8 138 92.8
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 5.4e-64 247.7 138 89.9
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.4e-64 247.7 138 89.9
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.5e-53 212.2 138 78.3
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.3e-53 211.8 138 78.3
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 1.4e-51 206.5 139 78.4
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.5e-42 176.4 107 83.2
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.0e-38 163.7 143 62.2
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 1.3e-38 163.3 143 62.2
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 3.3e-37 158.7 143 60.8
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 2.1e-36 156.0 143 60.8
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 3.1e-35 152.1 143 59.4
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 8.9e-35 150.6 140 62.9
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.5e-34 149.8 140 61.4
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 1.5e-34 149.8 140 62.9
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.2e-33 146.0 135 59.3
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.1e-32 143.7 141 56.7
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 3.2e-32 142.1 138 56.5
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 5.4e-32 141.4 138 55.8
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 5.4e-32 141.4 139 57.6
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 2.1e-31 139.4 140 56.4
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.3e-30 136.7 139 56.1
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.7e-30 136.3 141 57.4
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.7e-30 136.3 139 56.8
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 3.9e-30 135.2 142 52.8
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 8.6e-30 134.0 140 55.0
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 8.6e-30 134.0 140 55.0
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.5e-29 133.3 140 53.6
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 5.6e-29 131.3 142 52.1
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 7.3e-29 131.0 143 56.6
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 9.5e-29 130.6 139 55.4
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.6e-28 129.8 143 49.7
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 2.1e-28 129.4 142 51.4
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 2.1e-28 129.4 138 51.4
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.8e-28 129.0 138 53.6
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 2.8e-28 129.0 138 53.6
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 2.8e-28 129.0 142 51.4
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 4.7e-28 128.3 141 52.5
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 4.7e-28 128.3 141 52.5
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 8.1e-28 127.5 138 53.6
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 8.1e-28 127.5 138 53.6
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 8.1e-28 127.5 139 51.8
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.4e-27 126.7 139 54.7
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.4e-27 126.7 155 45.8
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.8e-27 126.3 138 52.9
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 2.3e-27 125.9 144 49.3
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 2.3e-27 125.9 140 50.0
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 3.1e-27 125.6 142 51.4
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 3.1e-27 125.6 143 50.3
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 5.2e-27 124.8 148 52.7
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 6.8e-27 124.4 138 53.6
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 8.9e-27 124.0 139 52.5
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 1.2e-26 123.6 141 49.6
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.5e-26 123.2 141 51.8
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.5e-26 123.2 138 50.0
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.5e-26 123.2 138 50.0
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 2.0e-26 122.9 139 51.1
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 3.4e-26 122.1 141 48.2
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 9.9e-26 120.6 139 51.8
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 2.2e-25 119.4 138 49.3
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 2.2e-25 119.4 149 47.7
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 2.2e-25 119.4 143 49.0
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 2.9e-25 119.0 135 51.9
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.9e-25 118.2 151 46.4
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 6.4e-25 117.9 138 48.6
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 1.1e-24 117.1 138 50.7
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.4e-24 116.7 151 47.0
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.9e-24 116.3 145 49.0
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.4e-24 115.9 142 49.3
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.4e-24 115.9 151 47.0
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 4.1e-24 115.2 143 46.2
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 5.4e-24 114.8 149 45.0
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 2.7e-23 112.5 138 46.4
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 2.7e-23 112.5 140 47.9
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 3.5e-23 112.1 139 48.9
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 6.0e-23 111.3 137 46.7
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 6.0e-23 111.3 138 46.4
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 6.0e-23 111.3 140 47.9
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 6.0e-23 111.3 139 46.8
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 7.8e-23 110.9 142 47.2
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.3e-22 110.2 138 46.4
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.3e-22 110.2 139 49.6
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.7e-22 109.8 144 43.8
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 2.3e-22 109.4 138 46.4
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 2.3e-22 109.4 138 46.4
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 3.0e-22 109.0 138 45.7
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 3.0e-22 109.0 138 46.4
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 6.6e-22 107.8 139 46.0
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 1.5e-21 106.7 147 45.6
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 1.5e-21 106.7 178 38.8
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 2.5e-21 105.9 138 45.7
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 2.5e-21 105.9 138 45.7
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 2.5e-21 105.9 138 45.7
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 4.3e-21 105.1 138 45.7
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 5.6e-21 104.8 140 46.4
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 9.6e-21 104.0 144 43.8
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.6e-20 103.2 144 45.1
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 2.1e-20 102.8 144 46.5
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 2.8e-20 102.4 152 42.8
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.4e-19 100.1 140 45.7
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 5.2e-19 98.2 139 41.0
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 5.2e-19 98.2 138 46.4
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.0e-18 96.3 139 40.3
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 2.9e-17 92.4 153 42.5
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.9e-16 89.7 137 41.6
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 7.1e-16 87.8 132 45.5
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 1.6e-15 86.7 131 42.7
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 3.9e-14 82.0 140 40.7
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 5.1e-14 81.6 98 53.1
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 3.3e-13 79.0 138 37.7
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 4.3e-13 78.6 199 33.2
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 5.6e-13 78.2 159 31.4
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 7.3e-13 77.8 141 38.3
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 2.8e-12 75.9 39 79.5
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 3.6e-12 75.5 167 34.1
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.8e-12 75.1 100 52.0
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 8.1e-12 74.3 167 33.5
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.8e-11 73.2 51 72.5
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.4e-11 72.8 54 68.5
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.4e-11 72.8 153 34.0
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 6.9e-11 71.2 54 68.5
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 6.4e-09 64.7 90 43.3
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.9e-08 63.2 140 36.4
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.4e-08 62.8 43 62.8
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 9.3e-08 60.8 82 42.7
Potri.004G176100 Populus trichocarpa HOM05D002972 ORTHO05D002272 7.9e-07 57.8 62 45.2
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 1.3e-06 57.0 42 52.4
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 1.3e-06 57.0 61 42.6
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.3e-06 57.0 76 50.0
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.3e-06 56.2 93 38.7
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 3.9e-06 55.5 48 45.8


User provided reference genes

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