Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 1.3e-171 606.3 311 100.0
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 2.1e-164 582.4 311 95.8
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.1e-164 582.4 311 95.8
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.6e-153 546.2 311 90.4
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 4.6e-148 528.1 312 87.8
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 8.7e-131 470.7 316 77.5
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.5e-130 469.9 316 77.2
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 9.6e-130 467.2 314 79.6
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.4e-128 463.4 316 76.3
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 1.8e-128 463.0 316 76.6
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 2.6e-127 459.1 312 77.2
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.6e-127 459.1 266 89.5
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 5.8e-127 458.0 312 76.9
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.0e-126 457.2 316 75.9
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 7.1e-125 451.1 313 75.7
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.2e-124 450.3 312 76.0
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.2e-124 450.3 309 75.4
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.1e-124 449.5 313 73.2
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 6.0e-124 448.0 311 74.9
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 1.3e-123 446.8 311 74.6
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 8.7e-123 444.1 320 75.0
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.9e-122 443.0 311 74.9
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.9e-122 443.0 311 74.9
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 4.3e-122 441.8 316 72.8
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 7.4e-122 441.0 316 74.7
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 9.6e-122 440.7 312 75.3
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 9.6e-122 440.7 312 75.3
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 1.6e-121 439.9 311 74.0
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 1.6e-121 439.9 311 74.0
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.1e-121 439.5 316 75.3
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 2.8e-121 439.1 311 74.9
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 8.2e-121 437.6 312 75.0
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 8.2e-121 437.6 311 74.0
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 4.0e-120 435.3 311 71.7
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 6.9e-120 434.5 315 72.1
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 1.2e-119 433.7 313 73.2
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 2.6e-119 432.6 315 72.7
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 3.4e-119 432.2 310 74.2
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 4.5e-119 431.8 315 71.7
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.3e-118 430.3 311 72.7
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 3.8e-118 428.7 312 71.5
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 4.9e-118 428.3 319 70.8
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 4.9e-118 428.3 314 71.0
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 6.5e-118 427.9 312 71.5
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 8.4e-118 427.6 314 70.1
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 1.9e-117 426.4 311 70.4
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 2.5e-117 426.0 311 72.7
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.2e-117 425.6 315 69.8
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 5.5e-117 424.9 315 70.5
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 1.0e-115 420.6 351 65.0
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.0e-115 420.6 313 71.2
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 3.0e-115 419.1 292 75.7
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 3.0e-115 419.1 313 69.6
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 3.9e-115 418.7 316 69.3
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 6.7e-115 417.9 316 69.9
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.1e-114 417.2 311 70.1
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.5e-114 416.8 312 70.5
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.9e-114 416.4 322 68.0
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.3e-114 415.2 324 67.3
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 7.4e-114 414.5 313 70.6
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.3e-113 413.7 322 67.7
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.3e-113 413.7 311 69.8
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.3e-113 413.7 324 67.6
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 2.2e-113 412.9 315 69.5
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 2.8e-113 412.5 319 69.3
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 2.8e-113 412.5 311 69.8
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.7e-113 412.1 311 70.4
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 3.7e-113 412.1 313 69.3
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.8e-113 411.8 318 69.2
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.1e-112 409.1 311 70.1
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 6.9e-112 407.9 312 69.9
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 2.6e-111 406.0 320 67.2
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.0e-110 404.1 347 63.7
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 1.0e-110 404.1 311 68.2
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 8.5e-110 401.0 311 67.5
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 7.2e-109 397.9 312 67.3
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 7.2e-109 397.9 311 68.8
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 2.7e-108 396.0 311 67.2
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 2.7e-108 396.0 314 66.9
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 3.6e-108 395.6 311 68.2
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.6e-108 395.6 313 67.7
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 4.6e-108 395.2 312 67.9
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 6.1e-108 394.8 317 66.6
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.4e-107 393.7 271 77.1
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 3.0e-107 392.5 311 67.5
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 3.0e-107 392.5 311 67.5
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 5.1e-107 391.7 312 67.3
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 6.7e-107 391.3 311 66.2
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 1.5e-106 390.2 311 67.5
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 1.5e-106 390.2 311 66.6
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 1.5e-106 390.2 311 66.6
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 1.5e-106 390.2 311 66.6
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 3.3e-106 389.0 315 67.3
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 4.3e-106 388.7 311 66.6
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 3.7e-105 385.6 333 63.1
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.3e-105 384.8 312 64.7
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 9.1e-104 380.9 224 85.3
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 2.0e-103 379.8 313 63.3
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 8.5e-102 374.4 314 64.3
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 6.7e-99 364.8 287 67.9
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.5e-98 363.6 263 71.9
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 2.6e-98 362.8 356 55.6
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.7e-97 360.1 341 58.4
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 2.2e-97 359.8 332 58.4
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 7.0e-96 354.8 245 74.7
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 9.4e-93 344.4 310 59.0
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.2e-92 344.0 203 83.7
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 6.1e-92 341.7 275 68.7
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.8e-91 340.1 313 61.0
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 4.4e-90 335.5 316 61.1
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.8e-88 330.1 211 79.1
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 5.3e-88 328.6 311 60.5
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.3e-86 323.9 249 69.1
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 5.0e-86 322.0 267 64.0
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 8.5e-86 321.2 317 54.3
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 1.8e-80 303.5 311 52.7
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 9.1e-80 301.2 185 81.1
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 5.4e-64 248.8 294 50.3
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.2e-63 247.7 138 92.8
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 1.6e-63 247.3 192 68.2
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 3.3e-61 239.6 190 68.9
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 4.0e-59 232.6 249 56.2
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 8.9e-59 231.5 257 53.7
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.1e-56 224.6 192 67.2
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 1.9e-56 223.8 377 40.6
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 2.4e-48 196.8 191 57.6
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 9.2e-48 194.9 117 85.5
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 3.0e-46 189.9 195 56.4
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 5.6e-45 185.7 312 40.7
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 2.8e-44 183.3 227 45.8
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 3.2e-40 169.9 216 44.0
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.0e-38 164.9 95 89.5
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 1.2e-36 157.9 204 48.0
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 4.0e-35 152.9 107 69.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 8.9e-35 151.8 96 83.3
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 6.4e-33 145.6 122 64.8
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.9e-32 144.1 93 82.8
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.2e-32 142.9 252 43.3
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.1e-31 140.6 126 60.3
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.1e-31 140.6 126 60.3
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.9e-27 125.6 80 77.5
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 5.1e-22 109.4 254 37.0
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 8.7e-22 108.6 95 64.2
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.4e-16 91.3 107 57.0
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.2e-16 90.1 62 75.8
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 5.6e-13 79.3 131 42.0
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 4.0e-11 73.2 39 76.9
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.7e-07 60.5 62 58.1
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.6e-07 59.7 43 60.5
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 4.6e-07 59.7 57 66.7
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.0e-06 58.5 43 65.1
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 6.7e-06 55.8 82 41.5


User provided reference genes

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