Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 5.0e-34 147.1 70 100.0
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 8.2e-29 129.8 63 93.7
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 2.1e-24 115.2 67 76.1
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.1e-24 115.2 67 76.1
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.1e-24 115.2 67 76.1
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.7e-24 114.8 64 79.7
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 4.7e-24 114.0 67 74.6
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 4.5e-19 97.4 67 56.7
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 7.7e-19 96.7 67 61.2
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 2.2e-18 95.1 67 56.7
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 2.2e-18 95.1 67 58.2
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.9e-18 94.7 67 61.2
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.9e-18 94.7 67 61.2
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 3.8e-18 94.4 67 58.2
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 5.0e-18 94.0 67 56.7
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 5.0e-18 94.0 67 58.2
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 6.5e-18 93.6 63 61.9
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 6.5e-18 93.6 69 55.1
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 6.5e-18 93.6 67 58.2
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 6.5e-18 93.6 67 58.2
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 8.5e-18 93.2 67 53.7
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 1.4e-17 92.4 67 56.7
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 1.4e-17 92.4 69 53.6
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 1.4e-17 92.4 69 53.6
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 1.4e-17 92.4 69 53.6
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.9e-17 92.0 63 61.9
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 2.5e-17 91.7 69 53.6
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 2.5e-17 91.7 67 56.7
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 4.2e-17 90.9 67 55.2
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 5.5e-17 90.5 67 55.2
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 5.5e-17 90.5 67 55.2
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 5.5e-17 90.5 67 53.7
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 5.5e-17 90.5 67 55.2
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 5.5e-17 90.5 67 53.7
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 5.5e-17 90.5 63 61.9
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 5.5e-17 90.5 63 61.9
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 7.2e-17 90.1 67 58.2
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 9.4e-17 89.7 67 53.7
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 9.4e-17 89.7 67 55.2
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 1.2e-16 89.4 63 57.1
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 1.2e-16 89.4 67 53.7
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.6e-16 89.0 67 55.2
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 1.6e-16 89.0 67 55.2
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.6e-16 89.0 67 55.2
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 1.6e-16 89.0 67 53.7
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 2.1e-16 88.6 63 61.9
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 2.1e-16 88.6 64 54.7
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 2.7e-16 88.2 67 55.2
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 2.7e-16 88.2 63 58.7
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 2.7e-16 88.2 63 55.6
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 3.6e-16 87.8 67 52.2
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 3.6e-16 87.8 63 58.7
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 3.6e-16 87.8 63 54.0
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 4.7e-16 87.4 67 53.7
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 6.1e-16 87.0 63 57.1
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 6.1e-16 87.0 63 52.4
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 6.1e-16 87.0 67 52.2
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 8.0e-16 86.7 67 50.7
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 8.0e-16 86.7 67 53.7
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 1.0e-15 86.3 63 54.0
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.4e-15 85.9 67 50.7
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.4e-15 85.9 63 55.6
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.4e-15 85.9 63 55.6
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.4e-15 85.9 63 55.6
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 1.4e-15 85.9 67 50.7
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 1.4e-15 85.9 69 47.8
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.8e-15 85.5 67 50.7
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 2.3e-15 85.1 67 47.8
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 3.0e-15 84.7 67 53.7
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 3.0e-15 84.7 67 52.2
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 3.0e-15 84.7 67 47.8
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 3.9e-15 84.3 67 49.3
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 5.2e-15 84.0 67 52.2
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 6.7e-15 83.6 67 52.2
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 6.7e-15 83.6 67 52.2
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 6.7e-15 83.6 63 52.4
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 8.8e-15 83.2 67 52.2
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 1.1e-14 82.8 67 50.7
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 2.6e-14 81.6 67 53.7
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 4.4e-14 80.9 67 50.7
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 4.4e-14 80.9 63 50.8
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 4.4e-14 80.9 63 50.8
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 5.7e-14 80.5 67 49.3
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 7.4e-14 80.1 67 47.8
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 9.7e-14 79.7 63 52.4
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 9.7e-14 79.7 67 47.8
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 9.7e-14 79.7 63 52.4
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 9.7e-14 79.7 69 44.9
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 1.3e-13 79.3 63 54.0
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 1.7e-13 79.0 63 52.4
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.7e-13 79.0 63 52.4
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 1.7e-13 79.0 63 52.4
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.7e-13 79.0 67 47.8
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 2.2e-13 78.6 63 47.6
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 2.8e-13 78.2 63 52.4
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 2.8e-13 78.2 63 52.4
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 4.8e-13 77.4 63 49.2
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 4.8e-13 77.4 67 46.3
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.1e-12 76.3 62 54.8
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 1.4e-12 75.9 67 46.3
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.4e-12 75.9 67 46.3
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 3.1e-12 74.7 67 44.8
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 3.1e-12 74.7 63 44.4
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 3.1e-12 74.7 68 47.1
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 3.1e-12 74.7 63 46.0
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 3.1e-12 74.7 56 55.4
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 7.0e-12 73.6 63 44.4
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 7.0e-12 73.6 63 44.4
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.2e-11 72.8 67 46.3
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 2.2e-10 68.6 63 49.2
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 2.9e-10 68.2 55 56.4
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 3.8e-10 67.8 62 50.0
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 3.8e-10 67.8 63 47.6
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 6.5e-10 67.0 62 50.0
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 8.5e-10 66.6 63 47.6
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.5e-09 65.9 63 44.4
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 3.2e-09 64.7 63 49.2
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 9.4e-09 63.2 64 40.6
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.6e-08 62.4 48 56.2
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 1.8e-07 58.9 67 34.3
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 1.5e-06 55.8 50 44.0


User provided reference genes

Program Settings