Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 2.1e-45 185.3 88 100.0
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 3.3e-27 124.8 74 77.0
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.7e-26 121.3 74 73.0
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.4e-25 119.4 74 73.0
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 5.3e-25 117.5 74 71.6
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 5.3e-25 117.5 74 71.6
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 8.4e-23 110.2 74 70.3
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 8.4e-23 110.2 74 68.9
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 1.1e-22 109.8 73 68.5
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 1.4e-22 109.4 80 65.0
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 9.3e-22 106.7 74 66.2
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 9.3e-22 106.7 74 67.6
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 6.1e-21 104.0 74 60.8
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 7.9e-21 103.6 74 64.9
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.3e-20 102.8 74 64.9
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 1.8e-20 102.4 74 63.5
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 2.3e-20 102.1 74 62.2
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.9e-20 101.3 73 64.4
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.9e-20 101.3 73 64.4
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 5.1e-20 100.9 81 60.5
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 6.7e-20 100.5 73 64.4
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 8.7e-20 100.1 74 60.8
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.1e-19 99.8 74 60.8
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.1e-19 99.8 74 63.5
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.5e-19 99.4 73 61.6
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.5e-19 99.4 73 61.6
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 1.9e-19 99.0 74 62.2
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 1.9e-19 99.0 73 63.0
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 3.3e-19 98.2 74 67.6
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 4.3e-19 97.8 79 63.3
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 5.7e-19 97.4 74 60.8
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 5.7e-19 97.4 74 60.8
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 5.7e-19 97.4 74 60.8
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 7.4e-19 97.1 73 60.3
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 7.4e-19 97.1 74 60.8
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 9.7e-19 96.7 79 57.0
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 9.7e-19 96.7 74 63.5
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.3e-18 96.3 74 60.8
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.3e-18 96.3 74 60.8
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 1.3e-18 96.3 80 60.0
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 1.3e-18 96.3 74 60.8
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 1.6e-18 95.9 74 63.5
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 2.2e-18 95.5 79 59.5
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 2.8e-18 95.1 74 60.8
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 2.8e-18 95.1 74 59.5
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 3.7e-18 94.7 81 58.0
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 3.7e-18 94.7 74 58.1
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 6.3e-18 94.0 78 57.7
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 6.3e-18 94.0 78 57.7
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 1.1e-17 93.2 79 57.0
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 1.1e-17 93.2 74 59.5
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 1.4e-17 92.8 79 57.0
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 1.4e-17 92.8 79 55.7
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 1.4e-17 92.8 79 55.7
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 1.4e-17 92.8 73 58.9
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.8e-17 92.4 81 51.9
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 1.8e-17 92.4 78 56.4
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 2.4e-17 92.0 73 58.9
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.4e-17 92.0 74 63.5
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 2.4e-17 92.0 74 59.5
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 2.4e-17 92.0 74 58.1
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 3.1e-17 91.7 74 55.4
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 3.1e-17 91.7 74 55.4
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 3.1e-17 91.7 81 55.6
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 4.1e-17 91.3 81 55.6
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 4.1e-17 91.3 74 59.5
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 4.1e-17 91.3 73 58.9
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 4.1e-17 91.3 74 54.1
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 4.1e-17 91.3 74 54.1
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 4.1e-17 91.3 74 54.1
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 4.1e-17 91.3 74 56.8
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 5.3e-17 90.9 74 59.5
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 5.3e-17 90.9 74 56.8
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 6.9e-17 90.5 72 58.3
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 6.9e-17 90.5 74 56.8
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 9.0e-17 90.1 73 57.5
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 9.0e-17 90.1 74 55.4
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 9.0e-17 90.1 74 55.4
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 1.2e-16 89.7 73 56.2
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 1.5e-16 89.4 79 54.4
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 1.5e-16 89.4 82 53.7
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 1.5e-16 89.4 74 52.7
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 1.5e-16 89.4 73 57.5
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 1.5e-16 89.4 74 55.4
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 2.0e-16 89.0 79 54.4
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 2.0e-16 89.0 74 52.7
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.0e-16 89.0 73 57.5
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 2.0e-16 89.0 81 54.3
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 2.0e-16 89.0 74 51.4
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 2.6e-16 88.6 74 51.4
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 3.4e-16 88.2 74 56.8
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 3.4e-16 88.2 73 57.5
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 4.5e-16 87.8 74 54.1
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 4.5e-16 87.8 73 57.5
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 7.7e-16 87.0 79 53.2
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 1.0e-15 86.7 73 56.2
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 1.0e-15 86.7 67 61.2
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 1.0e-15 86.7 73 56.2
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.7e-15 85.9 74 52.7
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 1.7e-15 85.9 71 59.2
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 1.7e-15 85.9 74 55.4
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 1.7e-15 85.9 86 51.2
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 1.7e-15 85.9 73 56.2
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 1.9e-14 82.4 65 58.5
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 1.9e-14 82.4 66 57.6
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 3.2e-14 81.6 61 60.7
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.2e-14 80.5 74 51.4
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 7.2e-14 80.5 74 50.0
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 7.2e-14 80.5 72 52.8
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.2e-13 79.7 74 51.4
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.2e-13 79.7 74 51.4
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.2e-13 79.7 74 51.4
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 1.6e-13 79.3 75 54.7
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 6.1e-13 77.4 71 52.1
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 6.1e-13 77.4 71 52.1
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 3.0e-12 75.1 67 52.2
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 3.9e-12 74.7 65 55.4
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 4.3e-11 71.2 43 76.7
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.7e-10 69.3 65 50.8
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 2.8e-10 68.6 69 46.4
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.5e-08 62.8 90 41.1
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 4.5e-08 61.2 42 66.7
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 5.9e-08 60.8 58 51.7
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 3.8e-07 58.2 47 57.4
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 1.4e-06 56.2 48 50.0


User provided reference genes

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