Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0271031 Rosa chinensis HOM05D001829 ORTHO05D003548 3.2e-29 131.0 60 100.0
RcHm_v2.0_Chr7g0229091 Rosa chinensis HOM05D001829 ORTHO05D003548 2.2e-14 81.6 42 85.7
FvH4_5g32510 Fragaria vesca HOM05D001829 ORTHO05D003548 1.1e-13 79.3 42 83.3
FAN08G2186 Fragaria x ananassa HOM05D001829 ORTHO05D003548 1.1e-13 79.3 42 83.3
FAN13G0664 Fragaria x ananassa HOM05D001829 ORTHO05D003548 1.1e-13 79.3 42 83.3
FAN18G3448 Fragaria x ananassa HOM05D001829 ORTHO05D003548 1.1e-13 79.3 42 83.3
Prupe.1G550000 Prunus persica HOM05D001829 ORTHO05D003548 3.0e-11 71.2 42 73.8
MD08G1216600 Malus domestica HOM05D001829 ORTHO05D003548 1.9e-10 68.6 42 69.0
MD15G1403800 Malus domestica HOM05D001829 ORTHO05D003548 4.3e-10 67.4 42 69.0
Haze_13907 Corylus avellana HOM05D001829 ORTHO05D003548 6.2e-09 63.5 42 64.3
Aa31LG9G12070 Aethionema arabicum HOM05D001829 ORTHO05D003548 8.1e-09 63.2 42 66.7
Aa31LG6G8200 Aethionema arabicum HOM05D001829 ORTHO05D003548 6.8e-08 60.1 42 61.9
Potri.019G077500 Populus trichocarpa HOM05D001829 ORTHO05D003548 6.8e-08 60.1 41 61.0
BcaB03g13685 Brassica carinata HOM05D001829 ORTHO05D003548 1.5e-07 58.9 42 64.3
BcaC05g27789 Brassica carinata HOM05D001829 ORTHO05D003548 2.6e-07 58.2 42 61.9
C05p37840 Brassica napus HOM05D001829 ORTHO05D003548 2.6e-07 58.2 42 61.9
BolC5t32519H Brassica oleracea HOM05D001829 ORTHO05D003548 2.6e-07 58.2 42 61.9
Duzib192G0272 Durio zibethinus HOM05D001829 ORTHO05D003548 3.4e-07 57.8 43 58.1
BcaB04g17913 Brassica carinata HOM05D001829 ORTHO05D003548 5.8e-07 57.0 42 59.5
A05p24170 Brassica napus HOM05D001829 ORTHO05D003548 7.6e-07 56.6 42 59.5
BraA05t21296Z Brassica rapa HOM05D001829 ORTHO05D003548 7.6e-07 56.6 42 59.5
Ciclev10019695m.g Citrus clementina HOM05D001829 ORTHO05D003548 7.6e-07 56.6 42 57.1
COL.COLO4_30473 Corchorus olitorius HOM05D001829 ORTHO05D003548 9.9e-07 56.2 43 55.8
Lj3g0019264 Lotus japonicus HOM05D001829 ORTHO05D003548 9.9e-07 56.2 36 63.9
Sp1g29240 Schrenkiella parvula HOM05D001829 ORTHO05D003548 9.9e-07 56.2 42 59.5
TWI23G1244 Tripterygium wilfordii HOM05D001829 ORTHO05D003548 9.9e-07 56.2 42 57.1
AL1G48420 Arabidopsis lyrata HOM05D001829 ORTHO05D003548 1.3e-06 55.8 42 59.5
AT1G33980 Arabidopsis thaliana HOM05D001829 ORTHO05D003548 1.3e-06 55.8 42 59.5
A09p32580 Brassica napus HOM05D001829 ORTHO05D003548 1.3e-06 55.8 59 45.8
TAR628G0621 Trochodendron aralioides HOM05D001829 ORTHO05D003548 1.3e-06 55.8 42 57.1
AUR62022364 Chenopodium quinoa HOM05D001829 ORTHO05D003548 1.7e-06 55.5 41 63.4
AUR62034338 Chenopodium quinoa HOM05D001829 ORTHO05D003548 1.7e-06 55.5 41 63.4
Thhalv10007455m.g Eutrema salsugineum HOM05D001829 ORTHO05D003548 1.7e-06 55.5 42 59.5
Thecc.06G095900 Theobroma cacao HOM05D001829 ORTHO05D003548 1.7e-06 55.5 43 55.8
Ah.05g168630 Amaranthus hybridus HOM05D001829 ORTHO05D001489 2.2e-06 55.1 42 61.9
EL10Ac1g01660 Beta vulgaris HOM05D001829 ORTHO05D003548 2.9e-06 54.7 50 56.0
BcaB07g33017 Brassica carinata HOM05D001829 ORTHO05D003548 2.9e-06 54.7 42 57.1
BcaC08g43827 Brassica carinata HOM05D001829 ORTHO05D003548 2.9e-06 54.7 42 57.1
C06p12110 Brassica napus HOM05D001829 ORTHO05D003548 2.9e-06 54.7 42 57.1
BolC6t36349H Brassica oleracea HOM05D001829 ORTHO05D003548 2.9e-06 54.7 42 57.1
Carub.0001s3206 Capsella rubella HOM05D001829 ORTHO05D003548 2.9e-06 54.7 42 59.5
CiPaw.03G018900 Carya illinoinensis HOM05D001829 ORTHO05D003548 2.9e-06 54.7 42 57.1
arahy.Tifrunner.gnm1.ann1.UF24CP Arachis hypogaea HOM05D001829 ORTHO05D003548 3.7e-06 54.3 50 48.0
Solyc01g103420.4 Solanum lycopersicum HOM05D001829 ORTHO05D003548 3.7e-06 54.3 41 53.7
Sopen01g045770 Solanum pennellii HOM05D001829 ORTHO05D003548 3.7e-06 54.3 41 53.7
BraA09t38799Z Brassica rapa HOM05D001829 ORTHO05D003548 6.4e-06 53.5 42 54.8
TPR.G25505 Trifolium pratense HOM05D001829 ORTHO05D003548 6.4e-06 53.5 36 58.3
Glyma.06G324500 Glycine max HOM05D001829 ORTHO05D003548 8.4e-06 53.1 36 61.1
Phvul.005G000800 Phaseolus vulgaris HOM05D001829 ORTHO05D003548 8.4e-06 53.1 53 47.2
QL09p004825 Quercus lobata HOM05D001829 ORTHO05D003548 8.4e-06 53.1 42 57.1


User provided reference genes

Program Settings