Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0270811 Rosa chinensis HOM05D000070 ORTHO05D005931 2.8e-100 368.6 190 100.0
RcHm_v2.0_Chr4g0406861 Rosa chinensis HOM05D000070 ORTHO05D005931 7.8e-82 307.4 187 87.7
FAN07G1072 Fragaria x ananassa HOM05D000961 ORTHO05D005931 9.5e-80 300.4 187 85.6
FAN12G3303 Fragaria x ananassa HOM05D003140 ORTHO05D005931 1.9e-75 286.2 187 81.3
FAN17G2943 Fragaria x ananassa HOM05D003140 ORTHO05D005931 4.3e-72 275.0 181 80.1
MD04G1007800 Malus domestica HOM05D000070 ORTHO05D005931 1.9e-64 249.6 187 71.7
CiPaw.01G100800 Carya illinoinensis HOM05D000070 ORTHO05D005931 3.6e-63 245.4 187 70.6
Cfa015158 Carpinus fangiana HOM05D000070 ORTHO05D005931 9.9e-61 237.3 187 71.1
QL10p048553 Quercus lobata HOM05D000070 ORTHO05D005931 6.6e-57 224.6 187 67.4
Haze_01497 Corylus avellana HOM05D000067 ORTHO05D005931 8.1e-55 217.6 209 62.7
Potri.017G030900 Populus trichocarpa HOM05D000070 ORTHO05D005931 1.8e-54 216.5 186 63.4
Potri.017G031400 Populus trichocarpa HOM05D000070 ORTHO05D005931 6.9e-54 214.5 186 62.4
GSVIVG01010750001 Vitis vinifera HOM05D000070 ORTHO05D005931 9.0e-54 214.2 201 62.2
Manes.04G042700 Manihot esculenta HOM05D000070 ORTHO05D005931 6.4e-52 208.0 186 62.9
TWI15G0144 Tripterygium wilfordii HOM05D000070 ORTHO05D005931 4.2e-51 205.3 187 63.6
Ciclev10018558m.g Citrus clementina HOM05D000070 ORTHO05D005931 9.3e-51 204.1 187 60.4
Sabra07G0104200 Salix brachista HOM05D000070 ORTHO05D005931 9.3e-51 204.1 186 61.3
Thecc.04G186200 Theobroma cacao HOM05D000070 ORTHO05D005931 1.2e-50 203.8 187 63.1
Potri.007G127900 Populus trichocarpa HOM05D000070 ORTHO05D005931 3.5e-50 202.2 186 61.8
Dinv36378 Davidia involucrata HOM05D000070 ORTHO05D005931 6.0e-50 201.4 185 62.2
Duzib151G0220 Durio zibethinus HOM05D000070 ORTHO05D005931 3.0e-49 199.1 187 62.0
Sabra17G0020000 Salix brachista HOM05D000070 ORTHO05D005931 2.5e-48 196.1 186 59.1
Actinidia34607 Actinidia chinensis HOM05D000070 ORTHO05D005931 3.3e-48 195.7 186 58.1
Cpa.g.sc9.267 Carica papaya HOM05D000070 ORTHO05D005931 1.3e-47 193.7 186 61.3
CANSAT54G0506 Cannabis sativa HOM05D000070 ORTHO05D005931 4.8e-47 191.8 188 61.7
COL.COLO4_20908 Corchorus olitorius HOM05D000070 ORTHO05D005931 8.1e-47 191.0 204 57.4
Actinidia35972 Actinidia chinensis HOM05D000070 ORTHO05D005931 1.1e-46 190.7 186 55.9
MELO3C011649.2 Cucumis melo HOM05D000070 ORTHO05D005931 1.8e-46 189.9 187 58.3
Gohir.D02G016900 Gossypium hirsutum HOM05D000070 ORTHO05D005931 9.0e-46 187.6 187 61.5
FvH4_4g10720 Fragaria vesca HOM05D000070 ORTHO05D005931 2.0e-45 186.4 105 88.6
Sed0022342 Sechium edule HOM05D000070 ORTHO05D005931 4.5e-45 185.3 187 58.3
TAR362G0755 Trochodendron aralioides HOM05D000070 ORTHO05D005931 9.9e-45 184.1 189 58.7
Lj3g0013218 Lotus japonicus HOM05D000070 ORTHO05D005931 1.3e-44 183.7 187 58.8
Gorai.009G351300 Gossypium raimondii HOM05D000070 ORTHO05D005931 2.9e-44 182.6 187 56.1
CSS0028544 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D005931 4.9e-44 181.8 186 56.5
Gohir.A02G015301 Gossypium hirsutum HOM05D000070 ORTHO05D005931 6.4e-44 181.4 186 59.7
AUR62015394 Chenopodium quinoa HOM05D000070 ORTHO05D005931 1.4e-43 180.3 189 54.0
Rhsim09G0028300 Rhododendron simsii HOM05D000070 ORTHO05D005931 1.4e-43 180.3 189 56.1
Gohir.A05G327300 Gossypium hirsutum HOM05D000070 ORTHO05D005931 3.2e-43 179.1 187 56.1
CsaV3_6G003880 Cucumis sativus L. HOM05D000070 ORTHO05D005931 4.2e-43 178.7 187 56.7
Gohir.D05G327400 Gossypium hirsutum HOM05D000070 ORTHO05D005931 4.2e-43 178.7 187 55.6
Sc25g0003000 Simmondsia chinensis HOM05D000070 ORTHO05D005931 5.5e-43 178.3 186 54.8
Gorai.005G020700 Gossypium raimondii HOM05D000070 ORTHO05D005931 7.1e-43 177.9 187 59.4
PGR083G1687 Punica granatum HOM05D000070 ORTHO05D005931 1.2e-42 177.2 188 53.7
Lj6C54T5 Lonicera japonica HOM05D000070 ORTHO05D005931 1.6e-42 176.8 198 56.1
Lalb_Chr01g0003191 Lupinus albus HOM05D000070 ORTHO05D005931 1.6e-42 176.8 187 56.1
Gorai.005G020400 Gossypium raimondii HOM05D000070 ORTHO05D005931 2.7e-42 176.0 187 59.4
Aqoxy2G04141 Aquilegia oxysepala HOM05D000070 ORTHO05D005931 3.5e-42 175.6 193 56.0
vmacro22679 Vaccinium macrocarpon HOM05D000070 ORTHO05D005931 4.6e-42 175.3 186 54.3
Glyma.12G052800 Glycine max HOM05D000070 ORTHO05D005931 6.0e-42 174.9 187 56.1
arahy.Tifrunner.gnm1.ann1.4K4GN8 Arachis hypogaea HOM05D000070 ORTHO05D005931 7.9e-42 174.5 188 54.3
TPR.G34234 Trifolium pratense HOM05D000070 ORTHO05D005931 7.9e-42 174.5 188 55.3
Psat7g213760 Pisum sativum HOM05D000070 ORTHO05D005931 1.0e-41 174.1 188 54.3
arahy.Tifrunner.gnm1.ann1.B2FMMM Arachis hypogaea HOM05D000070 ORTHO05D005931 1.3e-41 173.7 187 53.5
Medtr4g067100 Medicago truncatula HOM05D000070 ORTHO05D005931 2.3e-41 172.9 197 54.8
Nn1g09748 Nelumbo nucifera HOM05D000070 ORTHO05D005931 8.7e-41 171.0 202 53.5
Hund12010 Selenicereus undatus HOM05D000070 ORTHO05D005931 8.7e-41 171.0 191 52.4
Nitab4.5_0000131g0440 Nicotiana tabacum HOM05D000070 ORTHO05D005931 1.9e-40 169.9 188 53.2
QL01p052795 Quercus lobata HOM05D000070 ORTHO05D005931 1.9e-40 169.9 202 58.4
Glyma.11G128300 Glycine max HOM05D000070 ORTHO05D005931 2.5e-40 169.5 187 54.5
VMungo1127G1655 Vigna mungo HOM05D000070 ORTHO05D005931 3.3e-40 169.1 187 55.1
AUR62002296 Chenopodium quinoa HOM05D000070 ORTHO05D005931 4.3e-40 168.7 140 63.6
Ca_20782_v3 Cicer arietinum L. HOM05D000070 ORTHO05D005931 4.3e-40 168.7 187 54.0
MSTRG.22453 Avicennia marina HOM05D000070 ORTHO05D005931 7.4e-40 167.9 186 52.2
Atru.chr3.1506 Acer truncatum HOM05D000070 ORTHO05D005931 9.6e-40 167.5 109 77.1
AL1G15870 Arabidopsis lyrata HOM05D000070 ORTHO05D005931 9.6e-40 167.5 190 56.3
EL10Ac3g05926 Beta vulgaris HOM05D000070 ORTHO05D005931 2.1e-39 166.4 188 53.7
CAN.G475.45 Capsicum annuum HOM05D000070 ORTHO05D005931 2.8e-39 166.0 186 52.2
QL01p053894 Quercus lobata HOM05D000070 ORTHO05D005931 2.8e-39 166.0 203 58.6
Sed0006140 Sechium edule HOM05D000070 ORTHO05D005931 6.2e-39 164.9 189 54.5
Ah.13g072900 Amaranthus hybridus HOM05D000070 ORTHO05D005931 8.1e-39 164.5 189 51.9
Cc10_g15760 Coffea canephora HOM05D000070 ORTHO05D005931 8.1e-39 164.5 186 48.9
HPP92_009007 Vanilla planifolia HOM05D000070 ORTHO05D005931 1.4e-38 163.7 191 49.7
ECA240G1160 Erigeron canadensis HOM05D000070 ORTHO05D005931 2.4e-38 162.9 186 52.2
MSTRG.1524 Avicennia marina HOM05D000070 ORTHO05D005931 3.1e-38 162.5 190 51.1
Nitab4.5_0003300g0060 Nicotiana tabacum HOM05D000070 ORTHO05D005931 4.0e-38 162.2 186 52.2
CARHR005470 Cardamine hirsuta HOM05D000070 ORTHO05D005931 5.3e-38 161.8 191 52.9
Solyc04g076180.4 Solanum lycopersicum HOM05D000070 ORTHO05D005931 5.3e-38 161.8 186 51.1
Carub.0001s0528 Capsella rubella HOM05D000070 ORTHO05D005931 6.9e-38 161.4 189 54.0
Thhalv10006586m.g Eutrema salsugineum HOM05D000070 ORTHO05D005931 6.9e-38 161.4 189 52.9
HPP92_008996 Vanilla planifolia HOM05D000070 ORTHO05D005931 6.9e-38 161.4 191 50.8
Sopen04g030020 Solanum pennellii HOM05D000070 ORTHO05D005931 1.5e-37 160.2 186 50.5
Migut.C01257 Erythranthe guttata HOM05D000070 ORTHO05D005931 4.5e-37 158.7 189 49.2
AT1G05910 Arabidopsis thaliana HOM05D000070 ORTHO05D005931 7.6e-37 157.9 191 52.4
C05p04270 Brassica napus HOM05D000070 ORTHO05D005931 1.0e-36 157.5 190 51.1
HanXRQChr03g0091981 Helianthus annuus HOM05D000070 ORTHO05D005931 1.3e-36 157.1 187 51.3
SGA_v2.0_scaffold118G32488 Striga asiatica HOM05D000070 ORTHO05D005931 1.3e-36 157.1 185 50.8
BraA10t42726Z Brassica rapa HOM05D000070 ORTHO05D005931 1.7e-36 156.8 187 51.3
Phvul.011G054900 Phaseolus vulgaris HOM05D000070 ORTHO05D005931 2.9e-36 156.0 187 52.9
BcaC05g24320 Brassica carinata HOM05D000070 ORTHO05D005931 3.8e-36 155.6 188 50.0
Aa31LG1G8340 Aethionema arabicum HOM05D000070 ORTHO05D005931 4.9e-36 155.2 190 52.1
arahy.Tifrunner.gnm1.ann1.KNUI9Y Arachis hypogaea HOM05D000070 ORTHO05D005931 4.9e-36 155.2 187 51.9
A10p04610 Brassica napus HOM05D000070 ORTHO05D005931 8.4e-36 154.5 187 49.7
Sp1g04750 Schrenkiella parvula HOM05D000070 ORTHO05D005931 2.5e-35 152.9 194 51.0
MBI11_g13788_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D005931 9.3e-35 151.0 109 68.8
Peaxi162Scf00281g00017 Petunia axillaris HOM05D000070 ORTHO05D005931 9.3e-35 151.0 205 48.3
THA.LOC104826206 Tarenaya hassleriana HOM05D000070 ORTHO05D005931 1.2e-34 150.6 186 50.0
BcaC07g42100 Brassica carinata HOM05D000070 ORTHO05D005931 7.9e-34 147.9 195 48.7
A09p67240 Brassica napus HOM05D000070 ORTHO05D005931 1.8e-33 146.7 191 49.2
BolC5t29202H Brassica oleracea HOM05D000070 ORTHO05D005931 2.3e-33 146.4 208 46.6
arahy.Tifrunner.gnm1.ann1.BWA67Y Arachis hypogaea HOM05D001957 ORTHO05D005931 3.9e-33 145.6 186 47.3
CDE04G2237 Ceratophyllum demersum HOM05D000070 ORTHO05D005931 3.9e-33 145.6 198 47.0
BraA09t42057Z Brassica rapa HOM05D000070 ORTHO05D005931 6.7e-33 144.8 194 49.0
CDE07G0988 Ceratophyllum demersum HOM05D000070 ORTHO05D005931 6.7e-33 144.8 176 51.1
SalBow7G2668 Salvia bowleyana HOM05D000070 ORTHO05D005931 6.7e-33 144.8 190 46.8
arahy.Tifrunner.gnm1.ann1.5J8MXK Arachis hypogaea HOM05D000070 ORTHO05D016631 8.7e-33 144.4 186 47.3
C08p51530 Brassica napus HOM05D000070 ORTHO05D005931 8.7e-33 144.4 191 48.7
BolC8t52681H Brassica oleracea HOM05D000070 ORTHO05D005931 8.7e-33 144.4 191 48.2
PSO832G4402 Papaver somniferum HOM05D000070 ORTHO05D005931 1.5e-32 143.7 146 56.8
Eucgr.A00273 Eucalyptus grandis HOM05D000070 ORTHO05D005931 4.3e-32 142.1 162 51.2
PSO210G2057 Papaver somniferum HOM05D000070 ORTHO05D005931 7.4e-32 141.4 146 56.2
arahy.Tifrunner.gnm1.ann1.D659VP Arachis hypogaea HOM05D000070 ORTHO05D005931 1.8e-30 136.7 102 64.7
QL01p053543 Quercus lobata HOM05D000070 ORTHO05D005931 5.3e-30 135.2 123 67.5
Lsat_1_v5_gn_3_121920 Lactuca sativa HOM05D000070 ORTHO05D005931 1.5e-29 133.7 189 45.0
unitig_0.g2133 Utricularia gibba HOM05D000070 ORTHO05D005931 5.9e-29 131.7 183 43.2
ATR0743G258 Amborella trichopoda HOM05D000070 ORTHO05D005931 1.7e-28 130.2 148 54.1
QL01p053252 Quercus lobata HOM05D000070 ORTHO05D005931 5.0e-28 128.6 195 47.7
Os09g0515100 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D005931 1.2e-26 124.0 197 42.1
Zm00001eb318390 Zea mays HOM05D000070 ORTHO05D005931 1.0e-25 120.9 193 41.5
arahy.Tifrunner.gnm1.ann1.H147SP Arachis hypogaea HOM05D000070 ORTHO05D016631 2.2e-20 103.2 80 65.0
RcHm_v2.0_Chr3g0496841 Rosa chinensis HOM05D000070 ORTHO05D005931 6.7e-17 91.7 96 58.3
Mapoly0028s0109 Marchantia polymorpha HOM05D000070 ORTHO05D005931 3.7e-15 85.9 221 33.5
DCAR_031357 Daucus carota HOM05D000070 ORTHO05D005931 4.8e-15 85.5 69 62.3
Lsat_1_v5_gn_6_91280 Lactuca sativa HOM05D000070 ORTHO05D005931 1.8e-14 83.6 70 61.4
CBR_g32464 Chara braunii HOM05D000070 ORTHO05D005931 2.4e-14 83.2 179 36.3
Pp3c23_2940 Physcomitrium patens HOM05D000070 ORTHO05D005931 4.1e-14 82.4 84 54.8
Pp3c20_16710 Physcomitrium patens HOM05D000070 ORTHO05D005931 5.9e-13 78.6 136 39.0
AagrBONN_evm.TU.Sc2ySwM_228.2500 Anthoceros agrestis HOM05D000070 ORTHO05D005931 3.9e-09 65.9 199 31.7
SMO118G0259 Selaginella moellendorffii HOM05D000070 ORTHO05D005931 1.5e-08 63.9 148 34.5


User provided reference genes

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