Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0260081 Rosa chinensis HOM05D041594 ORTHO05D002466 2.5e-58 228.4 104 100.0
RcHm_v2.0_Chr6g0255971 Rosa chinensis HOM05D041594 ORTHO05D002466 1.7e-22 109.4 83 68.7
RcHm_v2.0_Chr7g0184771 Rosa chinensis HOM05D000147 ORTHO05D002466 1.3e-17 93.2 66 68.2
ClCG02G022210 Citrullus lanatus HOM05D000147 ORTHO05D002466 3.1e-16 88.6 106 49.1
MELO3C021413.2 Cucumis melo HOM05D000147 ORTHO05D002466 3.1e-16 88.6 106 49.1
CsaV3_6G015070 Cucumis sativus L. HOM05D000147 ORTHO05D002466 3.1e-16 88.6 106 49.1
MD11G1161300 Malus domestica HOM05D000147 ORTHO05D002466 3.1e-16 88.6 106 49.1
Sed0002851 Sechium edule HOM05D000147 ORTHO05D002466 3.1e-16 88.6 106 49.1
FvH4_3g24610 Fragaria vesca HOM05D000147 ORTHO05D002466 4.1e-16 88.2 106 49.1
FAN16G1236 Fragaria x ananassa HOM05D000147 ORTHO05D002466 4.1e-16 88.2 106 49.1
FAN21G3908 Fragaria x ananassa HOM05D000147 ORTHO05D002466 4.1e-16 88.2 106 49.1
FAN25G0281 Fragaria x ananassa HOM05D000147 ORTHO05D002466 4.1e-16 88.2 106 49.1
Lj3g0018056 Lotus japonicus HOM05D000147 ORTHO05D002466 4.1e-16 88.2 106 49.1
MD03G1141900 Malus domestica HOM05D000147 ORTHO05D002466 4.1e-16 88.2 106 49.1
Prupe.6G127200 Prunus persica HOM05D000147 ORTHO05D002466 4.1e-16 88.2 106 49.1
RcHm_v2.0_Chr5g0044161 Rosa chinensis HOM05D000147 ORTHO05D002466 4.1e-16 88.2 106 49.1
FAN11G0744 Fragaria x ananassa HOM05D000147 ORTHO05D002466 9.0e-16 87.0 106 48.1
Lalb_Chr19g0136611 Lupinus albus HOM05D000147 ORTHO05D002466 1.5e-15 86.3 106 49.1
TAR633G1291 Trochodendron aralioides HOM05D000147 ORTHO05D002466 3.4e-15 85.1 106 48.1
Nn6g34958 Nelumbo nucifera HOM05D000147 ORTHO05D002466 5.9e-15 84.3 106 47.2
TAR369G0325 Trochodendron aralioides HOM05D000147 ORTHO05D002466 5.9e-15 84.3 106 47.2
CANSAT54G2165 Cannabis sativa HOM05D000147 ORTHO05D002466 1.3e-14 83.2 108 48.1
Dinv29463 Davidia involucrata HOM05D000147 ORTHO05D002466 1.7e-14 82.8 106 46.2
TWI75G0574 Tripterygium wilfordii HOM05D000147 ORTHO05D002466 1.7e-14 82.8 106 47.2
Ca_19392_v3 Cicer arietinum L. HOM05D000147 ORTHO05D002466 5.0e-14 81.3 106 46.2
ATR0222G015 Amborella trichopoda HOM05D000147 ORTHO05D002466 6.5e-14 80.9 107 46.7
Manes.04G005000 Manihot esculenta HOM05D000147 ORTHO05D002466 8.5e-14 80.5 106 47.2
Cpa.g.sc32.109 Carica papaya HOM05D000147 ORTHO05D002466 1.1e-13 80.1 108 47.2
Dinv02038 Davidia involucrata HOM05D000147 ORTHO05D002466 1.1e-13 80.1 106 45.3
MBI05_g38960_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D002466 1.4e-13 79.7 106 45.3
Aqoxy4G02817 Aquilegia oxysepala HOM05D000147 ORTHO05D002466 1.9e-13 79.3 106 44.3
HPP92_002965 Vanilla planifolia HOM05D000147 ORTHO05D002466 1.9e-13 79.3 106 47.2
Gohir.A09G094800 Gossypium hirsutum HOM05D000147 ORTHO05D002466 3.2e-13 78.6 108 45.4
Gohir.D09G094700 Gossypium hirsutum HOM05D000147 ORTHO05D002466 3.2e-13 78.6 108 45.4
Gorai.006G111300 Gossypium raimondii HOM05D000147 ORTHO05D002466 3.2e-13 78.6 108 45.4
Lj3g0021639 Lotus japonicus HOM05D000147 ORTHO05D002466 3.2e-13 78.6 107 46.7
VMungo1127G2211 Vigna mungo HOM05D000147 ORTHO05D002466 3.2e-13 78.6 106 45.3
Dinv06776 Davidia involucrata HOM05D000147 ORTHO05D002466 5.5e-13 77.8 106 44.3
Lj1A242G15 Lonicera japonica HOM05D000147 ORTHO05D002466 5.5e-13 77.8 107 45.8
Lj1C234G0 Lonicera japonica HOM05D000147 ORTHO05D002466 5.5e-13 77.8 107 45.8
Manes.11G160400 Manihot esculenta HOM05D000147 ORTHO05D002466 5.5e-13 77.8 106 46.2
AL4G22800 Arabidopsis lyrata HOM05D000147 ORTHO05D002466 9.4e-13 77.0 108 44.4
Carub.0004s0826 Capsella rubella HOM05D000147 ORTHO05D002466 9.4e-13 77.0 108 44.4
AT2G27600 Arabidopsis thaliana HOM05D000147 ORTHO05D002466 1.2e-12 76.6 108 44.4
Phvul.011G092700 Phaseolus vulgaris HOM05D000147 ORTHO05D002466 1.6e-12 76.3 108 45.4
Haze_23403 Corylus avellana HOM05D000147 ORTHO05D002466 2.1e-12 75.9 108 46.3
Glyma.11G184700 Glycine max HOM05D000147 ORTHO05D002466 2.1e-12 75.9 107 45.8
Glyma.12G087700 Glycine max HOM05D000147 ORTHO05D002466 2.1e-12 75.9 107 45.8
Sp4g10420 Schrenkiella parvula HOM05D000147 ORTHO05D002466 2.1e-12 75.9 108 44.4
PSO339G4129 Papaver somniferum HOM05D000147 ORTHO05D002466 2.7e-12 75.5 108 47.2
PSO384G2193 Papaver somniferum HOM05D000147 ORTHO05D002466 2.7e-12 75.5 108 47.2
Cfa010044 Carpinus fangiana HOM05D000015 ORTHO05D002466 6.1e-12 74.3 108 45.4
DCAR_006346 Daucus carota HOM05D000147 ORTHO05D002466 7.9e-12 73.9 106 42.5
Duzib168G2031 Durio zibethinus HOM05D000147 ORTHO05D002466 7.9e-12 73.9 110 42.7
SalBow6G5635 Salvia bowleyana HOM05D000147 ORTHO05D002466 7.9e-12 73.9 106 42.5
Hma1.2p1_0305F.1_g119650 Hydrangea macrophylla HOM05D000147 ORTHO05D002466 1.0e-11 73.6 108 45.4
Sabra09G0111900 Salix brachista HOM05D000147 ORTHO05D002466 1.0e-11 73.6 106 43.4
Sp1g06900 Schrenkiella parvula HOM05D000147 ORTHO05D002466 1.0e-11 73.6 106 43.4
CSS0009578 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D002466 1.4e-11 73.2 66 59.1
Lj2A30T111 Lonicera japonica HOM05D000147 ORTHO05D002466 1.4e-11 73.2 106 42.5
Potri.004G184500 Populus trichocarpa HOM05D000147 ORTHO05D002466 1.4e-11 73.2 106 43.4
BraA03t11863Z Brassica rapa HOM05D000147 ORTHO05D002466 1.8e-11 72.8 106 42.5
Thhalv10016678m.g Eutrema salsugineum HOM05D000147 ORTHO05D002466 1.8e-11 72.8 108 43.5
Gohir.D08G015000 Gossypium hirsutum HOM05D000147 ORTHO05D002466 1.8e-11 72.8 111 42.3
CARHR120220 Cardamine hirsuta HOM05D000147 ORTHO05D002466 3.0e-11 72.0 108 42.6
Duzib150G0715 Durio zibethinus HOM05D000147 ORTHO05D002466 3.0e-11 72.0 110 43.6
Sabra09G0114600 Salix brachista HOM05D000147 ORTHO05D002466 3.0e-11 72.0 106 43.4
CiPaw.13G137700 Carya illinoinensis HOM05D000147 ORTHO05D002466 3.9e-11 71.6 108 45.4
Ciclev10028483m.g Citrus clementina HOM05D000147 ORTHO05D002466 3.9e-11 71.6 109 44.0
SGA_v2.0_scaffold83G26401 Striga asiatica HOM05D000147 ORTHO05D002466 5.1e-11 71.2 107 43.0
A03p26500 Brassica napus HOM05D000147 ORTHO05D002466 6.7e-11 70.9 106 41.5
Oeu031486.1 Olea europaea HOM05D000147 ORTHO05D002466 6.7e-11 70.9 106 43.4
Thecc.09G286100 Theobroma cacao HOM05D000147 ORTHO05D002466 6.7e-11 70.9 110 42.7
CARHR008120 Cardamine hirsuta HOM05D000147 ORTHO05D002466 8.8e-11 70.5 106 41.5
Psat5g256680 Pisum sativum HOM05D000147 ORTHO05D002466 8.8e-11 70.5 111 42.3
arahy.Tifrunner.gnm1.ann1.BN4VGF Arachis hypogaea HOM05D000147 ORTHO05D002466 1.1e-10 70.1 110 43.6
Duzib170G0655 Durio zibethinus HOM05D000147 ORTHO05D002466 1.1e-10 70.1 110 42.7
Gohir.A08G004700 Gossypium hirsutum HOM05D000147 ORTHO05D002466 1.1e-10 70.1 111 41.4
RcHm_v2.0_Chr2g0101721 Rosa chinensis HOM05D041594 ORTHO05D345089 1.1e-10 70.1 63 61.9
Actinidia35457 Actinidia chinensis HOM05D003901 ORTHO05D002466 1.5e-10 69.7 68 58.8
Gorai.004G009400 Gossypium raimondii HOM05D000147 ORTHO05D002466 2.0e-10 69.3 111 41.4
BcaB01g03080 Brassica carinata HOM05D000147 ORTHO05D002466 2.5e-10 68.9 106 42.5
Oeu035548.1 Olea europaea HOM05D000147 ORTHO05D002466 2.5e-10 68.9 106 42.5
TAR623G0337 Trochodendron aralioides HOM05D000147 ORTHO05D002466 2.5e-10 68.9 108 43.5
Actinidia37086 Actinidia chinensis HOM05D000147 ORTHO05D002466 3.3e-10 68.6 68 57.4
Migut.N02496 Erythranthe guttata HOM05D000147 ORTHO05D002466 3.3e-10 68.6 66 54.5
CiPaw.13G138000 Carya illinoinensis HOM05D000147 ORTHO05D002466 5.7e-10 67.8 108 43.5
Lj3g0003867 Lotus japonicus HOM05D000147 ORTHO05D002466 5.7e-10 67.8 75 52.0
Sabra04G0124200 Salix brachista HOM05D000147 ORTHO05D002466 5.7e-10 67.8 106 41.5
Solyc11g067230.2 Solanum lycopersicum HOM05D000147 ORTHO05D002466 5.7e-10 67.8 107 43.0
Solyc11g067240.2 Solanum lycopersicum HOM05D000147 ORTHO05D002466 5.7e-10 67.8 107 43.0
Sopen11g026920 Solanum pennellii HOM05D000147 ORTHO05D002466 5.7e-10 67.8 107 43.0
Sopen11g026930 Solanum pennellii HOM05D000147 ORTHO05D002466 5.7e-10 67.8 107 43.0
PGSC0003DMG403007403 Solanum tuberosum HOM05D000147 ORTHO05D002466 5.7e-10 67.8 107 43.0
MSTRG.21048 Avicennia marina HOM05D000147 ORTHO05D002466 9.7e-10 67.0 106 41.5
BcaC01g04952 Brassica carinata HOM05D000147 ORTHO05D002466 9.7e-10 67.0 107 41.1
BolC3t15521H Brassica oleracea HOM05D000147 ORTHO05D002466 9.7e-10 67.0 107 41.1
Gohir.D05G084800 Gossypium hirsutum HOM05D000147 ORTHO05D002466 9.7e-10 67.0 110 40.9
Gorai.009G086700 Gossypium raimondii HOM05D000147 ORTHO05D002466 9.7e-10 67.0 110 40.9
Rhsim01G0206200 Rhododendron simsii HOM05D000147 ORTHO05D002466 9.7e-10 67.0 68 57.4
PGSC0003DMG401007403 Solanum tuberosum HOM05D000147 ORTHO05D002466 9.7e-10 67.0 107 43.0
CAN.G919.20 Capsicum annuum HOM05D000147 ORTHO05D002466 1.3e-09 66.6 107 42.1
Nitab4.5_0002609g0010 Nicotiana tabacum HOM05D000147 ORTHO05D002466 1.3e-09 66.6 107 42.1
Nitab4.5_0008508g0010 Nicotiana tabacum HOM05D000147 ORTHO05D002466 1.3e-09 66.6 107 42.1
SGA_v2.0_scaffold22G09878 Striga asiatica HOM05D000147 ORTHO05D002466 2.2e-09 65.9 106 41.5
CAN.G730.38 Capsicum annuum HOM05D000147 ORTHO05D002466 2.8e-09 65.5 106 40.6
C03p31780 Brassica napus HOM05D000147 ORTHO05D002466 3.7e-09 65.1 107 40.2
PSO339G2980 Papaver somniferum HOM05D000147 ORTHO05D002466 4.8e-09 64.7 106 41.5
Hund20873 Selenicereus undatus HOM05D000147 ORTHO05D002466 4.8e-09 64.7 108 41.7
Glyma.12G183700 Glycine max HOM05D000147 ORTHO05D002466 6.3e-09 64.3 109 42.2
Psat7g188560 Pisum sativum HOM05D000147 ORTHO05D002466 6.3e-09 64.3 106 42.5
C04p24010 Brassica napus HOM05D000147 ORTHO05D002466 8.2e-09 63.9 106 40.6
BolC4t23895H Brassica oleracea HOM05D000147 ORTHO05D002466 8.2e-09 63.9 106 40.6
Atru.chr3.3297 Acer truncatum HOM05D000147 ORTHO05D002466 2.4e-08 62.4 112 41.1
Peaxi162Scf00173g00822 Petunia axillaris HOM05D000147 ORTHO05D002466 2.4e-08 62.4 106 39.6
Ca_19881_v3 Cicer arietinum L. HOM05D000147 ORTHO05D002466 3.1e-08 62.0 107 41.1
QL01p012569 Quercus lobata HOM05D000147 ORTHO05D002466 3.1e-08 62.0 107 41.1
Cfa009798 Carpinus fangiana HOM05D000147 ORTHO05D002466 4.1e-08 61.6 106 41.5
HanXRQChr01g0024251 Helianthus annuus HOM05D000147 ORTHO05D002466 4.1e-08 61.6 107 40.2
HanXRQChr01g0024261 Helianthus annuus HOM05D000147 ORTHO05D002466 4.1e-08 61.6 107 40.2
Phvul.005G125100 Phaseolus vulgaris HOM05D000147 ORTHO05D002466 5.3e-08 61.2 107 41.1
unitig_8.g3661 Utricularia gibba HOM05D000147 ORTHO05D002466 5.3e-08 61.2 106 38.7
VMungo1080G0274 Vigna mungo HOM05D000147 ORTHO05D002466 5.3e-08 61.2 107 41.1
BcaC02g10892 Brassica carinata HOM05D000147 ORTHO05D002466 6.9e-08 60.8 106 39.6
Nn2g14110 Nelumbo nucifera HOM05D000147 ORTHO05D002466 9.1e-08 60.5 106 38.7
arahy.Tifrunner.gnm1.ann1.761KJ5 Arachis hypogaea HOM05D000147 ORTHO05D002466 1.2e-07 60.1 109 41.3
AUR62039225 Chenopodium quinoa HOM05D000147 ORTHO05D002466 1.2e-07 60.1 108 40.7
Nitab4.5_0001437g0230 Nicotiana tabacum HOM05D000147 ORTHO05D002466 1.2e-07 60.1 107 40.2
Nitab4.5_0010239g0020 Nicotiana tabacum HOM05D000147 ORTHO05D002466 1.2e-07 60.1 107 40.2
SMO147G0250 Selaginella moellendorffii HOM05D000147 ORTHO05D002466 1.2e-07 60.1 110 37.3
arahy.Tifrunner.gnm1.ann1.L76AS5 Arachis hypogaea HOM05D000147 ORTHO05D002466 2.0e-07 59.3 110 40.0
Cfa011254 Carpinus fangiana HOM05D000147 ORTHO05D002466 2.0e-07 59.3 106 41.5
Lalb_Chr14g0374101 Lupinus albus HOM05D000147 ORTHO05D002466 2.0e-07 59.3 107 39.3
SEGI_23695 Sequoiadendron giganteum HOM05D000147 ORTHO05D002466 2.0e-07 59.3 108 40.7
ECA248G0168 Erigeron canadensis HOM05D003642 ORTHO05D002466 2.6e-07 58.9 107 37.4
Medtr2g036350 Medicago truncatula HOM05D000147 ORTHO05D002466 2.6e-07 58.9 70 45.7
CANSAT56G0230 Cannabis sativa HOM05D000147 ORTHO05D002466 4.5e-07 58.2 107 41.1
Sc12g0004390 Simmondsia chinensis HOM05D000147 ORTHO05D002466 5.9e-07 57.8 108 40.7
AagrBONN_evm.TU.Sc2ySwM_362.1150 Anthoceros agrestis HOM05D000147 ORTHO05D002466 7.7e-07 57.4 108 39.8
Sopen11g003090 Solanum pennellii HOM05D000147 ORTHO05D002466 7.7e-07 57.4 106 37.7
Lalb_Chr24g0395311 Lupinus albus HOM05D000147 ORTHO05D002466 1.0e-06 57.0 106 38.7
QL04p043265 Quercus lobata HOM05D000147 ORTHO05D002466 1.0e-06 57.0 66 50.0
Medtr4g053350 Medicago truncatula HOM05D000147 ORTHO05D002466 1.3e-06 56.6 106 37.7
THA.LOC104826415 Tarenaya hassleriana HOM05D000147 ORTHO05D002466 1.3e-06 56.6 107 38.3
Actinidia07236 Actinidia chinensis HOM05D000147 ORTHO05D002466 1.7e-06 56.2 67 50.7
Peaxi162Scf00091g00116 Petunia axillaris HOM05D000147 ORTHO05D002466 1.7e-06 56.2 60 56.7
vmacro03305 Vaccinium macrocarpon HOM05D000147 ORTHO05D002466 1.7e-06 56.2 69 49.3
Aa31LG5G8310 Aethionema arabicum HOM05D000147 ORTHO05D002466 2.2e-06 55.8 107 37.4
Medtr2g086160 Medicago truncatula HOM05D000147 ORTHO05D002466 2.2e-06 55.8 111 37.8
Pp3c1_1310 Physcomitrium patens HOM05D000147 ORTHO05D002466 2.2e-06 55.8 113 37.2
CAN.G534.20 Capsicum annuum HOM05D000147 ORTHO05D002466 2.9e-06 55.5 66 45.5
Ah.08g215850 Amaranthus hybridus HOM05D000147 ORTHO05D002466 5.0e-06 54.7 108 39.8
Cc01_g09390 Coffea canephora HOM05D000147 ORTHO05D002466 5.0e-06 54.7 109 39.4
Nitab4.5_0009385g0010 Nicotiana tabacum HOM05D000147 ORTHO05D002466 5.0e-06 54.7 107 41.1
Gohir.A07G109300 Gossypium hirsutum HOM05D000147 ORTHO05D002466 6.5e-06 54.3 110 36.4
Gohir.D07G113100 Gossypium hirsutum HOM05D000147 ORTHO05D002466 6.5e-06 54.3 110 36.4
Gorai.001G121400 Gossypium raimondii HOM05D000147 ORTHO05D002466 6.5e-06 54.3 110 36.4
EL10Ac7g15804 Beta vulgaris HOM05D000147 ORTHO05D002466 8.5e-06 53.9 108 39.8
Lsat_1_v5_gn_0_7500 Lactuca sativa HOM05D000147 ORTHO05D002466 8.5e-06 53.9 69 49.3


User provided reference genes

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