Gene: Sopen11g026930

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g026930
  • Transcript Identifier Sopen11g026930.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 62735567-62741249 : negative

Gene Family Information

  • ID HOM05D000147
  • #Genes/#Species 2513/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g026930.1

Descriptions

  • Description Encodes a SKD1 (Suppressor of K Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function. | SUPPRESSOR OF K TRANSPORT GROWTH DEFECT1 (SKD1) | FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding | INVOLVED IN: vesicle-mediated transport, endosome organization | LOCATED IN: cytoplasm, multivesicular body | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core , ATPase, AAA-type, core , ATPase, AAA-type, conserved site , Vps4 oligomerisation, C-terminal , MIT | BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016192
ISO
PLAZA Integrative Orthologyvesicle-mediated transport AT2G27600
GO:0007032
ISO
PLAZA Integrative Orthologyendosome organization AT2G27600
GO:0055075
ISO
PLAZA Integrative Orthologypotassium ion homeostasis AT2G27600
GO:0007033
ISO
PLAZA Integrative Orthologyvacuole organization AT2G27600
GO:0055078
ISO
PLAZA Integrative Orthologysodium ion homeostasis AT2G27600
GO:0010091
ISO
PLAZA Integrative Orthologytrichome branching AT2G27600

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G27600

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G27600
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT2G27600
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G27600
GO:0005771
ISO
PLAZA Integrative Orthologymultivesicular body AT2G27600

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003959 ATPase, AAA-type, core
IPR007330 MIT domain
IPR003593 AAA+ ATPase domain
IPR036181 MIT domain superfamily
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR015415 Vps4 oligomerisation, C-terminal
Mapman id Description
22.4.1.4.1 Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.VPS4-VTA1 ESCRT-disassembly complex.ATPase component VPS4/SKD1