Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 2.5e-74 282.0 136 100.0
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 2.2e-54 215.7 111 92.8
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 7.3e-50 200.7 113 86.7
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.3e-50 200.7 113 86.7
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 7.3e-50 200.7 113 86.7
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.4e-48 196.4 113 85.0
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.3e-38 163.3 111 64.0
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 1.7e-38 162.9 111 67.6
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 2.2e-38 162.5 110 68.2
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 2.9e-38 162.2 113 64.6
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 3.8e-38 161.8 113 64.6
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 8.4e-38 160.6 113 63.7
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 8.4e-38 160.6 113 62.8
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 1.4e-37 159.8 111 64.0
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 2.4e-37 159.1 113 67.3
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 7.1e-37 157.5 106 65.1
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 7.1e-37 157.5 108 67.6
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 9.3e-37 157.1 111 63.1
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 1.2e-36 156.8 111 64.0
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 2.7e-36 155.6 104 66.3
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.3e-35 153.3 108 65.7
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.0e-35 152.1 113 61.1
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 3.9e-35 151.8 108 65.7
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 3.9e-35 151.8 115 62.6
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 5.1e-35 151.4 113 60.2
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 5.1e-35 151.4 108 63.9
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 6.7e-35 151.0 113 58.4
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 8.7e-35 150.6 109 63.3
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 8.7e-35 150.6 108 64.8
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 1.1e-34 150.2 132 56.8
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 1.1e-34 150.2 111 59.5
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 1.1e-34 150.2 102 64.7
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 1.1e-34 150.2 108 63.9
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.5e-34 149.8 106 64.2
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 1.5e-34 149.8 110 61.8
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 1.9e-34 149.4 111 64.9
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 3.3e-34 148.7 109 62.4
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 4.3e-34 148.3 92 71.7
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 4.3e-34 148.3 101 66.3
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 5.6e-34 147.9 122 58.2
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 5.6e-34 147.9 85 85.9
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 7.4e-34 147.5 109 60.6
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 9.6e-34 147.1 113 60.2
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 9.6e-34 147.1 113 60.2
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 9.6e-34 147.1 111 59.5
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 1.6e-33 146.4 113 58.4
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 1.6e-33 146.4 84 84.5
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 1.6e-33 146.4 98 64.3
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 2.1e-33 146.0 97 69.1
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 2.1e-33 146.0 97 69.1
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 2.1e-33 146.0 97 69.1
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.1e-33 146.0 97 69.1
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 2.1e-33 146.0 97 69.1
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 2.1e-33 146.0 92 70.7
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 2.8e-33 145.6 110 63.6
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 2.8e-33 145.6 106 62.3
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 2.8e-33 145.6 111 57.7
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 2.8e-33 145.6 111 62.2
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 3.7e-33 145.2 97 69.1
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 3.7e-33 145.2 108 60.2
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 3.7e-33 145.2 111 58.6
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 3.7e-33 145.2 113 58.4
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 3.7e-33 145.2 109 60.6
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 4.8e-33 144.8 106 63.2
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 4.8e-33 144.8 106 60.4
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 4.8e-33 144.8 111 58.6
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 6.2e-33 144.4 108 63.0
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 8.2e-33 144.1 111 60.4
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 8.2e-33 144.1 108 58.3
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 1.1e-32 143.7 105 61.9
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.8e-32 142.9 109 58.7
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.8e-32 142.9 111 58.6
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 1.8e-32 142.9 111 57.7
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 2.4e-32 142.5 98 61.2
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 3.1e-32 142.1 113 56.6
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 5.3e-32 141.4 113 56.6
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 6.9e-32 141.0 111 57.7
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 1.2e-31 140.2 98 61.2
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.5e-31 139.8 98 60.2
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 1.5e-31 139.8 103 59.2
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 2.0e-31 139.4 92 66.3
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 2.0e-31 139.4 103 58.3
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 2.6e-31 139.0 121 55.4
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.6e-31 139.0 109 59.6
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.6e-31 139.0 109 59.6
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 2.6e-31 139.0 111 57.7
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 3.4e-31 138.7 109 56.9
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 3.4e-31 138.7 113 54.9
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 4.5e-31 138.3 105 61.9
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 5.8e-31 137.9 109 58.7
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 5.8e-31 137.9 111 60.4
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 7.6e-31 137.5 102 65.7
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 7.6e-31 137.5 102 65.7
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 1.0e-30 137.1 104 63.5
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.0e-30 137.1 104 62.5
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 1.3e-30 136.7 104 58.7
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.7e-30 136.3 102 64.7
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.7e-30 136.3 102 64.7
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.7e-30 136.3 106 54.7
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 1.7e-30 136.3 93 60.2
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 2.9e-30 135.6 110 58.2
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 3.8e-30 135.2 108 59.3
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 3.8e-30 135.2 108 58.3
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 6.5e-30 134.4 109 58.7
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.1e-29 133.7 108 56.5
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.4e-29 133.3 91 61.5
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 1.9e-29 132.9 98 59.2
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 3.2e-29 132.1 108 55.6
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 3.2e-29 132.1 109 56.9
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 7.1e-29 131.0 104 55.8
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 9.7e-26 120.6 88 58.0
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 2.2e-25 119.4 85 63.5
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 5.3e-24 114.8 97 56.7
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.2e-23 113.6 83 62.7
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 6.5e-22 107.8 89 56.2
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.4e-21 106.7 84 58.3
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 2.5e-21 105.9 92 58.7
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 2.5e-21 105.9 92 58.7
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-20 103.6 80 61.2
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 7.9e-20 100.9 89 55.1
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 1.4e-19 100.1 104 46.2
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 5.1e-19 98.2 106 41.5
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.1e-18 97.1 89 52.8
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.1e-18 97.1 81 54.3
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.5e-18 95.9 63 65.1
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 3.1e-16 89.0 99 43.4
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-15 87.0 74 54.1
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 2.6e-15 85.9 74 54.1
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 7.7e-15 84.3 77 55.8
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.5e-13 79.3 102 35.3
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 1.3e-09 67.0 64 48.4
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 1.7e-09 66.6 43 60.5
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 5.9e-07 58.2 48 50.0


User provided reference genes

Program Settings