Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0255971 Rosa chinensis HOM05D041594 ORTHO05D002466 1.2e-39 166.0 81 100.0
RcHm_v2.0_Chr6g0260081 Rosa chinensis HOM05D041594 ORTHO05D002466 3.9e-22 107.8 83 68.7
FAN11G0744 Fragaria x ananassa HOM05D000147 ORTHO05D002466 1.4e-16 89.4 106 52.8
ClCG02G022210 Citrullus lanatus HOM05D000147 ORTHO05D002466 3.2e-16 88.2 106 51.9
MELO3C021413.2 Cucumis melo HOM05D000147 ORTHO05D002466 3.2e-16 88.2 106 51.9
CsaV3_6G015070 Cucumis sativus L. HOM05D000147 ORTHO05D002466 3.2e-16 88.2 106 51.9
MD11G1161300 Malus domestica HOM05D000147 ORTHO05D002466 3.2e-16 88.2 106 51.9
Sed0002851 Sechium edule HOM05D000147 ORTHO05D002466 3.2e-16 88.2 106 51.9
FvH4_3g24610 Fragaria vesca HOM05D000147 ORTHO05D002466 4.1e-16 87.8 106 51.9
FAN16G1236 Fragaria x ananassa HOM05D000147 ORTHO05D002466 4.1e-16 87.8 106 51.9
FAN21G3908 Fragaria x ananassa HOM05D000147 ORTHO05D002466 4.1e-16 87.8 106 51.9
FAN25G0281 Fragaria x ananassa HOM05D000147 ORTHO05D002466 4.1e-16 87.8 106 51.9
Lj3g0018056 Lotus japonicus HOM05D000147 ORTHO05D002466 4.1e-16 87.8 106 51.9
MD03G1141900 Malus domestica HOM05D000147 ORTHO05D002466 4.1e-16 87.8 106 51.9
Prupe.6G127200 Prunus persica HOM05D000147 ORTHO05D002466 4.1e-16 87.8 106 51.9
RcHm_v2.0_Chr5g0044161 Rosa chinensis HOM05D000147 ORTHO05D002466 4.1e-16 87.8 106 51.9
Lalb_Chr19g0136611 Lupinus albus HOM05D000147 ORTHO05D002466 1.6e-15 85.9 106 50.9
TAR633G1291 Trochodendron aralioides HOM05D000147 ORTHO05D002466 3.5e-15 84.7 106 50.9
Lj3g0021639 Lotus japonicus HOM05D000147 ORTHO05D002466 6.0e-15 84.0 107 51.4
TAR369G0325 Trochodendron aralioides HOM05D000147 ORTHO05D002466 6.0e-15 84.0 106 50.0
CANSAT54G2165 Cannabis sativa HOM05D000147 ORTHO05D002466 7.8e-15 83.6 108 50.9
Dinv29463 Davidia involucrata HOM05D000147 ORTHO05D002466 1.3e-14 82.8 93 52.7
MBI05_g38960_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D002466 1.3e-14 82.8 93 52.7
Carub.0004s0826 Capsella rubella HOM05D000147 ORTHO05D002466 2.3e-14 82.0 95 52.6
Nn6g34958 Nelumbo nucifera HOM05D000147 ORTHO05D002466 2.3e-14 82.0 106 49.1
AT2G27600 Arabidopsis thaliana HOM05D000147 ORTHO05D002466 3.0e-14 81.6 95 52.6
Manes.11G160400 Manihot esculenta HOM05D000147 ORTHO05D002466 3.9e-14 81.3 93 53.8
TWI75G0574 Tripterygium wilfordii HOM05D000147 ORTHO05D002466 3.9e-14 81.3 106 49.1
RcHm_v2.0_Chr2g0101721 Rosa chinensis HOM05D041594 ORTHO05D345089 5.0e-14 80.9 64 68.8
AL4G22800 Arabidopsis lyrata HOM05D000147 ORTHO05D002466 6.6e-14 80.5 95 51.6
Ca_19392_v3 Cicer arietinum L. HOM05D000147 ORTHO05D002466 6.6e-14 80.5 106 49.1
CARHR120220 Cardamine hirsuta HOM05D000147 ORTHO05D002466 1.1e-13 79.7 95 51.6
Cpa.g.sc32.109 Carica papaya HOM05D000147 ORTHO05D002466 1.1e-13 79.7 108 50.0
Dinv02038 Davidia involucrata HOM05D000147 ORTHO05D002466 1.1e-13 79.7 106 48.1
Aqoxy4G02817 Aquilegia oxysepala HOM05D000147 ORTHO05D002466 1.5e-13 79.3 106 47.2
Cfa010044 Carpinus fangiana HOM05D000015 ORTHO05D002466 1.9e-13 79.0 108 50.0
Manes.04G005000 Manihot esculenta HOM05D000147 ORTHO05D002466 1.9e-13 79.0 93 51.6
Sp4g10420 Schrenkiella parvula HOM05D000147 ORTHO05D002466 1.9e-13 79.0 95 51.6
HPP92_002965 Vanilla planifolia HOM05D000147 ORTHO05D002466 1.9e-13 79.0 106 48.1
ATR0222G015 Amborella trichopoda HOM05D000147 ORTHO05D002466 2.5e-13 78.6 107 48.6
CSS0009578 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D002466 3.3e-13 78.2 69 63.8
PSO339G4129 Papaver somniferum HOM05D000147 ORTHO05D002466 3.3e-13 78.2 108 50.9
PSO384G2193 Papaver somniferum HOM05D000147 ORTHO05D002466 3.3e-13 78.2 108 50.9
Hma1.2p1_0305F.1_g119650 Hydrangea macrophylla HOM05D000147 ORTHO05D002466 4.3e-13 77.8 108 50.0
Dinv06776 Davidia involucrata HOM05D000147 ORTHO05D002466 5.6e-13 77.4 106 47.2
Duzib168G2031 Durio zibethinus HOM05D000147 ORTHO05D002466 5.6e-13 77.4 97 48.5
Lj1A242G15 Lonicera japonica HOM05D000147 ORTHO05D002466 5.6e-13 77.4 107 48.6
Lj1C234G0 Lonicera japonica HOM05D000147 ORTHO05D002466 5.6e-13 77.4 107 48.6
VMungo1127G2211 Vigna mungo HOM05D000147 ORTHO05D002466 5.6e-13 77.4 106 48.1
Haze_23403 Corylus avellana HOM05D000147 ORTHO05D002466 7.3e-13 77.0 108 49.1
BraA03t11863Z Brassica rapa HOM05D000147 ORTHO05D002466 9.5e-13 76.6 93 49.5
Gohir.A09G094800 Gossypium hirsutum HOM05D000147 ORTHO05D002466 9.5e-13 76.6 95 50.5
Gohir.D09G094700 Gossypium hirsutum HOM05D000147 ORTHO05D002466 9.5e-13 76.6 95 50.5
Gorai.006G111300 Gossypium raimondii HOM05D000147 ORTHO05D002466 9.5e-13 76.6 95 50.5
Thhalv10016678m.g Eutrema salsugineum HOM05D000147 ORTHO05D002466 1.6e-12 75.9 95 50.5
Ciclev10028483m.g Citrus clementina HOM05D000147 ORTHO05D002466 2.1e-12 75.5 109 47.7
RcHm_v2.0_Chr7g0184771 Rosa chinensis HOM05D000147 ORTHO05D002466 2.1e-12 75.5 67 64.2
A03p26500 Brassica napus HOM05D000147 ORTHO05D002466 3.6e-12 74.7 93 48.4
Duzib150G0715 Durio zibethinus HOM05D000147 ORTHO05D002466 4.7e-12 74.3 110 46.4
Psat5g256680 Pisum sativum HOM05D000147 ORTHO05D002466 4.7e-12 74.3 98 49.0
arahy.Tifrunner.gnm1.ann1.BN4VGF Arachis hypogaea HOM05D000147 ORTHO05D002466 6.2e-12 73.9 110 47.3
CiPaw.13G138000 Carya illinoinensis HOM05D000147 ORTHO05D002466 6.2e-12 73.9 108 49.1
Sabra09G0111900 Salix brachista HOM05D000147 ORTHO05D002466 6.2e-12 73.9 93 48.4
Lj2A30T111 Lonicera japonica HOM05D000147 ORTHO05D002466 8.1e-12 73.6 106 47.2
Thecc.09G286100 Theobroma cacao HOM05D000147 ORTHO05D002466 8.1e-12 73.6 97 48.5
Potri.004G184500 Populus trichocarpa HOM05D000147 ORTHO05D002466 1.1e-11 73.2 106 45.3
BcaB01g03080 Brassica carinata HOM05D000147 ORTHO05D002466 1.4e-11 72.8 93 49.5
CARHR008120 Cardamine hirsuta HOM05D000147 ORTHO05D002466 1.4e-11 72.8 93 48.4
Duzib170G0655 Durio zibethinus HOM05D000147 ORTHO05D002466 1.4e-11 72.8 97 48.5
Sp1g06900 Schrenkiella parvula HOM05D000147 ORTHO05D002466 1.4e-11 72.8 93 50.5
Glyma.11G184700 Glycine max HOM05D000147 ORTHO05D002466 1.8e-11 72.4 108 48.1
Glyma.12G087700 Glycine max HOM05D000147 ORTHO05D002466 1.8e-11 72.4 108 48.1
Sabra09G0114600 Salix brachista HOM05D000147 ORTHO05D002466 1.8e-11 72.4 93 48.4
CiPaw.13G137700 Carya illinoinensis HOM05D000147 ORTHO05D002466 2.3e-11 72.0 108 48.1
Phvul.011G092700 Phaseolus vulgaris HOM05D000147 ORTHO05D002466 3.1e-11 71.6 108 46.3
Actinidia37086 Actinidia chinensis HOM05D000147 ORTHO05D002466 5.2e-11 70.9 71 60.6
BcaC01g04952 Brassica carinata HOM05D000147 ORTHO05D002466 5.2e-11 70.9 94 47.9
BolC3t15521H Brassica oleracea HOM05D000147 ORTHO05D002466 5.2e-11 70.9 94 47.9
Gohir.D08G015000 Gossypium hirsutum HOM05D000147 ORTHO05D002466 5.2e-11 70.9 98 45.9
Gorai.004G009400 Gossypium raimondii HOM05D000147 ORTHO05D002466 5.2e-11 70.9 98 45.9
SalBow6G5635 Salvia bowleyana HOM05D000147 ORTHO05D002466 5.2e-11 70.9 106 44.3
DCAR_006346 Daucus carota HOM05D000147 ORTHO05D002466 1.2e-10 69.7 106 43.4
Gohir.D05G084800 Gossypium hirsutum HOM05D000147 ORTHO05D002466 1.5e-10 69.3 97 46.4
Gorai.009G086700 Gossypium raimondii HOM05D000147 ORTHO05D002466 1.5e-10 69.3 97 46.4
C03p31780 Brassica napus HOM05D000147 ORTHO05D002466 2.0e-10 68.9 94 46.8
Solyc11g067230.2 Solanum lycopersicum HOM05D000147 ORTHO05D002466 2.6e-10 68.6 107 45.8
Solyc11g067240.2 Solanum lycopersicum HOM05D000147 ORTHO05D002466 2.6e-10 68.6 107 45.8
Sopen11g026920 Solanum pennellii HOM05D000147 ORTHO05D002466 2.6e-10 68.6 107 45.8
Sopen11g026930 Solanum pennellii HOM05D000147 ORTHO05D002466 2.6e-10 68.6 107 45.8
PGSC0003DMG403007403 Solanum tuberosum HOM05D000147 ORTHO05D002466 2.6e-10 68.6 107 45.8
Actinidia35457 Actinidia chinensis HOM05D003901 ORTHO05D002466 3.4e-10 68.2 71 59.2
Gohir.A08G004700 Gossypium hirsutum HOM05D000147 ORTHO05D002466 3.4e-10 68.2 98 44.9
Sabra04G0124200 Salix brachista HOM05D000147 ORTHO05D002466 4.4e-10 67.8 106 43.4
PGSC0003DMG401007403 Solanum tuberosum HOM05D000147 ORTHO05D002466 4.4e-10 67.8 107 45.8
Atru.chr3.3297 Acer truncatum HOM05D000147 ORTHO05D002466 5.8e-10 67.4 111 45.9
Oeu031486.1 Olea europaea HOM05D000147 ORTHO05D002466 5.8e-10 67.4 106 44.3
SGA_v2.0_scaffold83G26401 Striga asiatica HOM05D000147 ORTHO05D002466 5.8e-10 67.4 107 43.9
CAN.G730.38 Capsicum annuum HOM05D000147 ORTHO05D002466 7.5e-10 67.0 106 43.4
PSO339G2980 Papaver somniferum HOM05D000147 ORTHO05D002466 7.5e-10 67.0 93 47.3
Rhsim01G0206200 Rhododendron simsii HOM05D000147 ORTHO05D002466 7.5e-10 67.0 71 57.7
SGA_v2.0_scaffold22G09878 Striga asiatica HOM05D000147 ORTHO05D002466 9.9e-10 66.6 106 44.3
CAN.G919.20 Capsicum annuum HOM05D000147 ORTHO05D002466 2.2e-09 65.5 107 43.9
Nitab4.5_0002609g0010 Nicotiana tabacum HOM05D000147 ORTHO05D002466 2.2e-09 65.5 107 43.9
Nitab4.5_0008508g0010 Nicotiana tabacum HOM05D000147 ORTHO05D002466 2.2e-09 65.5 107 43.9
Oeu035548.1 Olea europaea HOM05D000147 ORTHO05D002466 2.2e-09 65.5 106 43.4
Psat7g188560 Pisum sativum HOM05D000147 ORTHO05D002466 2.2e-09 65.5 106 45.3
MSTRG.21048 Avicennia marina HOM05D000147 ORTHO05D002466 2.9e-09 65.1 106 43.4
Migut.N02496 Erythranthe guttata HOM05D000147 ORTHO05D002466 2.9e-09 65.1 56 60.7
C04p24010 Brassica napus HOM05D000147 ORTHO05D002466 3.7e-09 64.7 93 46.2
BolC4t23895H Brassica oleracea HOM05D000147 ORTHO05D002466 3.7e-09 64.7 93 46.2
HanXRQChr01g0024251 Helianthus annuus HOM05D000147 ORTHO05D002466 3.7e-09 64.7 94 46.8
Potri.010G237100 Populus trichocarpa HOM05D000147 ORTHO05D002466 3.7e-09 64.7 95 44.2
Glyma.12G183700 Glycine max HOM05D000147 ORTHO05D002466 6.4e-09 63.9 109 44.0
Peaxi162Scf00173g00822 Petunia axillaris HOM05D000147 ORTHO05D002466 6.4e-09 63.9 106 42.5
QL01p012569 Quercus lobata HOM05D000147 ORTHO05D002466 1.1e-08 63.2 107 43.9
HanXRQChr01g0024261 Helianthus annuus HOM05D000147 ORTHO05D002466 1.4e-08 62.8 94 45.7
arahy.Tifrunner.gnm1.ann1.761KJ5 Arachis hypogaea HOM05D000147 ORTHO05D002466 2.4e-08 62.0 96 46.9
Ca_19881_v3 Cicer arietinum L. HOM05D000147 ORTHO05D002466 2.4e-08 62.0 94 45.7
QL04p043697 Quercus lobata HOM05D000147 ORTHO05D002466 2.4e-08 62.0 92 42.4
TAR623G0337 Trochodendron aralioides HOM05D000147 ORTHO05D002466 2.4e-08 62.0 109 44.0
arahy.Tifrunner.gnm1.ann1.L76AS5 Arachis hypogaea HOM05D000147 ORTHO05D002466 3.2e-08 61.6 110 42.7
BcaC02g10892 Brassica carinata HOM05D000147 ORTHO05D002466 3.2e-08 61.6 93 45.2
ECA248G0168 Erigeron canadensis HOM05D003642 ORTHO05D002466 3.2e-08 61.6 94 43.6
Nitab4.5_0001437g0230 Nicotiana tabacum HOM05D000147 ORTHO05D002466 3.2e-08 61.6 107 43.0
Nitab4.5_0010239g0020 Nicotiana tabacum HOM05D000147 ORTHO05D002466 3.2e-08 61.6 107 43.0
Sabra10G0185600 Salix brachista HOM05D000147 ORTHO05D002466 3.2e-08 61.6 95 43.2
SEGI_23695 Sequoiadendron giganteum HOM05D000147 ORTHO05D002466 4.1e-08 61.2 108 43.5
Cfa009798 Carpinus fangiana HOM05D000147 ORTHO05D002466 5.4e-08 60.8 106 42.5
Phvul.005G125100 Phaseolus vulgaris HOM05D000147 ORTHO05D002466 5.4e-08 60.8 107 43.0
Hund20873 Selenicereus undatus HOM05D000147 ORTHO05D002466 5.4e-08 60.8 95 45.3
VMungo1080G0274 Vigna mungo HOM05D000147 ORTHO05D002466 5.4e-08 60.8 107 43.0
QL04p043265 Quercus lobata HOM05D000147 ORTHO05D002466 9.2e-08 60.1 106 38.7
unitig_8.g3661 Utricularia gibba HOM05D000147 ORTHO05D002466 9.2e-08 60.1 106 40.6
AUR62039225 Chenopodium quinoa HOM05D000147 ORTHO05D002466 1.2e-07 59.7 95 45.3
Lalb_Chr14g0374101 Lupinus albus HOM05D000147 ORTHO05D002466 1.6e-07 59.3 94 43.6
Potri.008G022300 Populus trichocarpa HOM05D000147 ORTHO05D002466 1.6e-07 59.3 95 43.2
Potri.008G022216 Populus trichocarpa HOM05D000147 ORTHO05D002466 2.1e-07 58.9 95 43.2
CAN.G534.20 Capsicum annuum HOM05D000147 ORTHO05D002466 2.7e-07 58.5 88 43.2
Nn2g14110 Nelumbo nucifera HOM05D000147 ORTHO05D002466 3.5e-07 58.2 106 39.6
QL04p044183 Quercus lobata HOM05D000147 ORTHO05D002466 3.5e-07 58.2 90 40.0
Medtr4g053350 Medicago truncatula HOM05D000147 ORTHO05D002466 4.6e-07 57.8 106 40.6
Medtr2g036350 Medicago truncatula HOM05D000147 ORTHO05D002466 7.8e-07 57.0 56 55.4
Medtr8g046940 Medicago truncatula HOM05D000147 ORTHO05D002466 7.8e-07 57.0 56 55.4
AT1G08270 Arabidopsis thaliana HOM05D000147 ORTHO05D002466 1.0e-06 56.6 56 57.1
THA.LOC104826415 Tarenaya hassleriana HOM05D000147 ORTHO05D002466 1.3e-06 56.2 94 42.6
Zm00001eb124730 Zea mays HOM05D000147 ORTHO05D002466 1.3e-06 56.2 108 41.7
Zm00001eb335640 Zea mays HOM05D000147 ORTHO05D002466 1.3e-06 56.2 108 41.7
Lsat_1_v5_gn_0_7500 Lactuca sativa HOM05D000147 ORTHO05D002466 1.7e-06 55.8 71 49.3
Lalb_Chr24g0395311 Lupinus albus HOM05D000147 ORTHO05D002466 1.7e-06 55.8 106 41.5
Medtr2g086160 Medicago truncatula HOM05D000147 ORTHO05D002466 1.7e-06 55.8 98 41.8
Aa31LG5G8310 Aethionema arabicum HOM05D000147 ORTHO05D002466 2.3e-06 55.5 94 41.5
CANSAT56G0230 Cannabis sativa HOM05D000147 ORTHO05D002466 2.3e-06 55.5 94 42.6
SMO147G0250 Selaginella moellendorffii HOM05D000147 ORTHO05D002466 2.3e-06 55.5 110 37.3
vmacro03305 Vaccinium macrocarpon HOM05D000147 ORTHO05D002466 2.3e-06 55.5 72 50.0
QL04p043919 Quercus lobata HOM05D000147 ORTHO05D002466 3.0e-06 55.1 66 48.5
Cfa011254 Carpinus fangiana HOM05D000147 ORTHO05D002466 3.9e-06 54.7 106 40.6
QL04p044053 Quercus lobata HOM05D000147 ORTHO05D002466 3.9e-06 54.7 63 46.0
Sopen11g003090 Solanum pennellii HOM05D000147 ORTHO05D002466 3.9e-06 54.7 106 38.7
Thecc.10G108400 Theobroma cacao HOM05D000147 ORTHO05D002466 3.9e-06 54.7 93 43.0
Thhalv10007683m.g Eutrema salsugineum HOM05D000147 ORTHO05D002466 5.1e-06 54.3 94 41.5
PGR083G1424 Punica granatum HOM05D000147 ORTHO05D002466 6.6e-06 53.9 58 55.2
AagrBONN_evm.TU.Sc2ySwM_362.1150 Anthoceros agrestis HOM05D000147 ORTHO05D002466 8.6e-06 53.5 108 39.8
Pp3c1_1310 Physcomitrium patens HOM05D000147 ORTHO05D002466 8.6e-06 53.5 113 38.1


User provided reference genes

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