Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 1.8e-184 649.0 311 100.0
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.4e-157 557.8 306 87.6
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.7e-156 555.4 306 88.9
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.9e-154 549.3 306 87.3
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 2.6e-151 538.9 297 87.2
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.8e-151 537.7 297 86.9
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.4e-149 532.3 307 85.7
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.7e-139 499.6 314 79.0
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 5.3e-136 488.0 314 76.4
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 5.6e-130 468.0 310 72.3
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.2e-127 460.3 295 74.9
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 4.2e-125 451.8 322 68.9
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.6e-124 449.9 304 69.4
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 2.7e-124 449.1 307 71.3
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.9e-122 443.0 308 69.5
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.9e-122 443.0 308 67.2
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 6.2e-121 438.0 297 70.0
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 5.3e-120 434.9 305 70.2
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 2.6e-119 432.6 299 70.9
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.7e-118 429.9 304 67.4
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 2.2e-118 429.5 305 66.6
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 4.9e-118 428.3 297 70.4
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 6.5e-118 427.9 295 69.2
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 6.5e-118 427.9 302 68.2
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.4e-117 426.8 308 67.9
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.4e-117 426.8 302 67.5
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 5.5e-117 424.9 295 68.5
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 7.1e-117 424.5 292 67.5
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 9.3e-117 424.1 296 68.9
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 1.6e-116 423.3 302 67.5
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 2.7e-116 422.5 306 66.0
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 4.6e-116 421.8 309 65.4
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.0e-115 420.6 306 66.7
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.3e-115 420.2 315 65.7
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.3e-115 419.5 309 65.0
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 5.1e-115 418.3 292 69.9
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 8.7e-115 417.5 306 64.4
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 2.5e-114 416.0 310 62.9
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 3.3e-114 415.6 312 65.4
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 2.2e-113 412.9 311 65.0
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.2e-113 412.9 315 64.8
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 6.3e-113 411.4 266 72.2
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.1e-112 410.6 290 67.6
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 6.9e-112 407.9 301 62.8
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.5e-111 406.8 301 64.8
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 2.0e-111 406.4 265 72.5
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 3.4e-111 405.6 305 62.0
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 3.4e-111 405.6 301 64.5
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 5.9e-111 404.8 286 65.0
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.3e-110 403.7 298 65.4
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 1.3e-110 403.7 323 61.3
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.3e-110 403.7 292 65.8
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 1.7e-110 403.3 267 69.3
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.9e-109 399.8 265 68.3
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 2.5e-109 399.4 284 66.9
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.6e-108 396.7 300 62.3
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.6e-108 396.7 300 62.3
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 6.1e-108 394.8 293 62.8
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 7.9e-108 394.4 311 63.0
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.0e-107 394.0 301 61.5
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.8e-107 393.3 289 65.4
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 3.0e-107 392.5 303 61.7
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 3.9e-107 392.1 301 64.1
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 6.7e-107 391.3 359 54.0
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 8.8e-107 391.0 289 65.1
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.5e-106 390.2 281 67.3
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 2.5e-106 389.4 383 52.7
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 7.4e-106 387.9 282 63.1
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 9.7e-106 387.5 295 61.4
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 4.8e-105 385.2 309 61.8
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 6.3e-105 384.8 294 62.9
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 6.3e-105 384.8 377 53.3
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 6.3e-105 384.8 303 60.7
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 8.2e-105 384.4 297 59.6
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.1e-104 384.0 298 63.4
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 1.4e-104 383.6 299 59.9
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 1.4e-104 383.6 292 61.0
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.8e-104 383.3 429 49.7
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 2.4e-104 382.9 234 75.2
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 3.1e-104 382.5 292 60.6
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 9.1e-104 380.9 306 60.8
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.2e-103 380.6 311 59.8
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 7.7e-103 377.9 296 60.1
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 7.7e-103 377.9 296 60.1
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.0e-102 377.5 303 59.4
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 5.0e-102 375.2 302 58.3
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 5.0e-102 375.2 307 58.3
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 8.5e-102 374.4 303 59.7
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.1e-101 374.0 312 58.0
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.1e-101 374.0 304 59.5
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 2.5e-101 372.9 287 59.2
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 3.2e-101 372.5 304 59.5
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 3.0e-99 365.9 308 56.8
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 3.3e-98 362.5 271 61.3
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.3e-97 360.5 291 59.8
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.7e-97 360.1 302 58.9
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.0e-95 353.2 348 52.3
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 3.8e-94 349.0 204 80.4
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.6e-92 343.6 245 67.8
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.8e-91 340.1 309 56.0
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 2.8e-89 332.8 303 53.1
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 3.7e-89 332.4 309 55.7
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 2.0e-87 326.6 267 56.6
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.7e-86 323.6 293 53.9
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 8.8e-83 311.2 274 57.7
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.4e-80 303.9 307 48.5
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.1e-80 302.8 207 68.1
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 3.1e-80 302.8 318 52.2
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 7.2e-77 291.6 271 56.1
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 3.0e-75 286.2 154 82.5
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.1e-69 267.7 341 43.7
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.2e-68 264.2 233 57.1
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 2.8e-68 263.1 313 44.4
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.0e-67 261.2 211 60.7
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.4e-67 260.8 274 46.7
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 3.3e-61 239.6 132 80.3
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 1.2e-60 237.7 299 46.5
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.8e-60 236.5 126 81.7
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 6.2e-52 208.8 193 55.4
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 6.2e-52 208.8 193 55.4
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 6.8e-51 205.3 176 63.1
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 9.2e-40 168.3 128 54.7
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 6.6e-38 162.2 83 86.7
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 6.2e-28 129.0 75 76.0
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 4.2e-24 116.3 135 48.9
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 9.3e-24 115.2 136 47.1
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 9.3e-24 115.2 136 47.1
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 2.7e-23 113.6 122 50.8
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 2.7e-23 113.6 100 60.0
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.1e-20 104.0 131 44.3
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 3.1e-19 100.1 229 29.7
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.8e-17 93.2 109 47.7


User provided reference genes

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