Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 2.1e-114 415.6 200 100.0
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 1.9e-102 375.9 198 91.4
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.7e-101 372.1 198 90.9
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.0e-96 355.9 217 82.5
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.2e-88 330.1 183 88.5
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 9.4e-78 293.9 202 70.8
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 1.6e-77 293.1 200 73.0
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.9e-69 264.2 192 65.6
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.7e-68 261.2 192 64.1
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 1.1e-67 260.4 197 65.5
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 5.7e-67 258.1 197 62.9
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.3e-66 256.9 197 62.9
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.8e-65 253.1 196 64.8
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 5.3e-65 251.5 197 61.4
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 5.3e-65 251.5 203 62.1
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.6e-64 250.0 204 61.3
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 2.6e-64 249.2 204 62.3
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.3e-63 246.9 215 57.7
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 1.3e-63 246.9 215 57.7
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 1.7e-63 246.5 186 61.3
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 6.5e-63 244.6 192 61.5
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 8.5e-63 244.2 194 61.9
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.1e-62 243.8 196 60.7
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.5e-62 243.4 215 56.7
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.9e-62 243.0 192 60.4
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.9e-62 243.0 192 60.4
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 2.5e-62 242.7 204 58.3
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 7.2e-62 241.1 204 60.3
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 9.4e-62 240.7 191 56.0
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 9.4e-62 240.7 192 61.5
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 1.2e-61 240.4 204 59.8
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 1.6e-61 240.0 201 58.2
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.1e-61 239.6 204 59.8
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 4.7e-61 238.4 192 62.0
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 8.0e-61 237.7 213 55.9
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 1.4e-60 236.9 204 59.3
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.4e-60 236.9 193 60.1
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 1.4e-60 236.9 197 56.3
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 1.8e-60 236.5 192 58.3
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 2.3e-60 236.1 192 58.9
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 6.7e-60 234.6 213 56.3
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 1.2e-59 233.8 203 59.1
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 1.5e-59 233.4 203 58.6
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.6e-59 232.6 140 83.6
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 2.6e-59 232.6 194 59.8
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 3.3e-59 232.3 203 59.1
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.3e-58 230.3 192 58.3
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.2e-58 229.6 198 56.6
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 1.4e-57 226.9 202 55.4
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 3.1e-57 225.7 191 58.6
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 4.1e-57 225.3 191 57.6
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 5.3e-57 224.9 189 61.4
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 9.1e-57 224.2 235 49.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.6e-56 223.4 199 53.3
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 2.0e-56 223.0 214 54.7
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 2.0e-56 223.0 193 60.1
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 3.5e-56 222.2 191 56.5
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 3.5e-56 222.2 193 59.1
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 5.9e-56 221.5 203 52.2
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.0e-55 220.7 191 56.0
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 1.0e-55 220.7 197 53.3
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.0e-55 220.7 199 58.3
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 1.7e-55 219.9 218 52.3
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.2e-55 219.5 191 56.0
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 8.5e-55 217.6 199 51.8
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 1.1e-54 217.2 213 51.6
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 4.2e-54 215.3 194 53.1
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 9.4e-54 214.2 226 49.6
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 9.4e-54 214.2 226 49.6
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 9.4e-54 214.2 190 56.8
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 1.2e-53 213.8 223 51.1
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 2.7e-53 212.6 194 53.6
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 2.7e-53 212.6 194 53.6
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 2.7e-53 212.6 194 53.6
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 3.6e-53 212.2 199 50.8
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.0e-52 210.7 177 59.3
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.0e-52 210.7 213 51.2
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 3.0e-52 209.1 179 58.1
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 4.0e-52 208.8 199 50.3
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 8.8e-52 207.6 237 48.1
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 1.5e-51 206.8 185 56.8
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 4.4e-51 205.3 177 58.8
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 4.4e-51 205.3 192 53.1
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 4.4e-51 205.3 231 49.4
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 9.8e-51 204.1 221 48.0
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 1.3e-50 203.8 197 49.7
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.8e-50 202.6 193 51.8
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 4.8e-50 201.8 176 54.0
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 4.8e-50 201.8 193 51.3
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 1.1e-49 200.7 203 48.3
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 1.4e-49 200.3 189 57.1
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.4e-49 199.5 191 50.3
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 7.0e-49 198.0 199 47.7
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 2.0e-48 196.4 198 51.0
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 2.7e-48 196.1 192 51.0
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 1.0e-47 194.1 198 48.0
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 2.3e-47 193.0 192 51.6
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 2.9e-47 192.6 191 45.5
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 1.1e-46 190.7 179 50.3
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.9e-46 189.9 177 57.1
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 4.2e-46 188.7 156 62.2
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 9.5e-46 187.6 197 47.7
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 6.1e-45 184.9 193 43.0
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 3.0e-44 182.6 227 41.9
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 3.0e-44 182.6 192 45.8
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.4e-43 178.7 101 89.1
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 1.1e-41 174.1 170 51.2
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 2.0e-40 169.9 259 38.2
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 1.5e-38 163.7 161 52.8
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 1.9e-38 163.3 102 80.4
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 4.3e-38 162.2 131 64.1
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 2.8e-37 159.5 203 43.3
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.1e-33 147.5 192 42.7
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 3.2e-33 146.0 191 43.5
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 7.0e-33 144.8 119 52.9
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 2.0e-32 143.3 134 56.0
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 9.5e-30 134.4 200 39.5
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 8.0e-29 131.3 104 63.5
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 3.1e-28 129.4 94 69.1
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 5.2e-28 128.6 204 33.8
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 2.0e-27 126.7 129 48.1
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 3.4e-27 125.9 117 50.4
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 5.8e-27 125.2 98 63.3
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 1.3e-26 124.0 112 56.2
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 6.4e-26 121.7 109 48.6
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 1.2e-24 117.5 135 45.9
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 3.0e-23 112.8 98 57.1
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 6.2e-21 105.1 70 71.4
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.2e-21 105.1 98 58.2
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 1.1e-20 104.4 111 54.1
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 7.5e-19 98.2 101 45.5
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.1e-17 91.7 75 62.7
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-16 90.5 100 51.0
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 3.5e-16 89.4 67 64.2
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 6.0e-16 88.6 78 48.7
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.0e-15 86.3 68 52.9
FAN16G3049 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.9e-15 85.9 58 75.9
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 5.1e-15 85.5 65 55.4
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.5e-14 84.0 43 88.4
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.3e-14 81.6 64 60.9
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 2.1e-13 80.1 63 63.5
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 8.1e-13 78.2 66 56.1
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.0e-12 75.9 46 65.2
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 6.4e-10 68.6 109 39.4
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 3.2e-09 66.2 40 72.5
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 3.5e-08 62.8 48 58.3
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 7.8e-08 61.6 44 54.5
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 3.9e-07 59.3 80 41.2
Nn1g02586 Nelumbo nucifera HOM05D002720 ORTHO05D002901 3.3e-06 56.2 191 25.1
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.3e-06 56.2 60 41.7
Haze_27325 Corylus avellana HOM05D004044 ORTHO05D004841 5.6e-06 55.5 155 27.1
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 9.6e-06 54.7 46 47.8
FvH4_4g02510 Fragaria vesca HOM05D002720 ORTHO05D002901 9.6e-06 54.7 119 27.7
FAN12G2349 Fragaria x ananassa HOM05D002720 ORTHO05D002901 9.6e-06 54.7 119 27.7


User provided reference genes

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