Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1475.3 741 100.0
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1427.5 741 96.4
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1426.0 741 96.1
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1425.2 741 96.1
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1424.1 741 96.2
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1421.8 741 96.2
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1419.8 741 94.9
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1414.1 742 94.6
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1409.0 741 94.2
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1363.6 741 90.8
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1360.1 741 90.8
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1359.4 741 90.6
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1359.4 741 90.1
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1358.6 741 90.3
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1357.8 741 90.0
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1355.9 741 89.7
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1354.3 743 90.2
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1352.8 741 90.0
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1350.9 739 89.9
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1350.5 741 89.3
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1348.6 740 89.9
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1347.0 739 89.6
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1346.6 740 89.7
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1345.9 741 89.6
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1343.9 739 89.7
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1342.8 741 89.6
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1340.9 741 88.8
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1340.5 741 89.2
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1340.5 741 88.8
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1339.3 768 86.6
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1338.6 743 88.8
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1338.2 741 88.5
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1337.8 741 89.2
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1336.6 741 88.8
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1333.9 740 88.9
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1332.8 747 88.1
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1331.6 741 89.1
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1330.9 739 88.8
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1330.5 741 88.5
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1329.7 741 88.5
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1329.7 741 88.3
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1328.9 742 88.0
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1328.2 742 88.3
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1327.4 741 88.3
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1327.0 763 86.9
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1327.0 763 86.9
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1326.6 741 88.4
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1325.5 742 88.1
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1323.1 741 88.3
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1323.1 745 88.1
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1322.4 741 87.7
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1320.1 741 87.7
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1320.1 741 88.7
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1319.7 741 86.8
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1318.9 741 87.3
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1315.8 741 87.9
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1313.5 735 88.0
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1307.0 740 86.9
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 744 87.5
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1304.7 740 86.4
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1304.3 740 86.8
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 740 85.9
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 741 86.2
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 738 86.6
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 741 86.5
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1301.2 741 86.1
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 740 85.8
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 741 86.4
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 740 86.2
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1300.0 741 86.5
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 740 85.9
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 740 85.9
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 741 86.8
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 743 86.1
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1299.3 743 86.1
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1298.5 741 86.0
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 740 85.7
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 743 86.0
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1297.7 741 86.0
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1297.0 743 86.7
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1295.8 740 85.5
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1295.8 744 86.3
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1295.4 743 85.9
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 740 85.4
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1293.9 707 90.2
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1293.1 743 86.3
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1293.1 744 86.0
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1292.3 741 86.1
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1291.6 741 85.7
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1290.8 742 85.3
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1290.8 743 85.9
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1290.0 742 85.7
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1289.6 741 86.2
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1289.6 741 85.3
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 744 86.0
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 740 85.8
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1283.1 737 85.8
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1281.9 711 89.3
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1281.5 744 85.2
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1278.8 822 79.2
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1278.5 742 84.6
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1278.1 803 80.1
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1275.0 741 84.5
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1273.5 738 85.1
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1268.4 757 83.1
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1268.1 747 84.1
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1267.3 773 82.3
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1248.0 745 83.1
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1241.1 707 86.4
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1241.1 720 85.3
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1238.0 710 86.6
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1237.2 736 84.8
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1235.7 741 83.4
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1226.5 747 81.8
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1226.1 737 82.4
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1215.3 674 89.0
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1214.5 668 89.5
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1209.5 747 80.6
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1182.9 750 79.7
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1133.6 739 76.2
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1133.2 616 89.8
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1128.6 631 87.6
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1114.0 686 78.7
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1111.7 746 73.9
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1090.9 740 72.7
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 5.1e-312 1074.7 700 75.1
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 6.3e-297 1023.8 636 78.9
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 2.6e-242 842.4 667 62.7
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 1.5e-234 816.6 699 60.2
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.3e-228 797.0 540 76.7
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 6.1e-215 751.5 644 60.9
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 2.0e-210 736.5 741 56.0
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 4.5e-210 735.3 464 79.7
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 5.9e-210 734.9 523 73.2
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.8e-209 732.3 739 55.8
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 5.2e-206 721.8 453 80.6
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 5.8e-133 479.2 433 59.8
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 1.1e-131 474.9 263 87.5
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 8.5e-100 369.0 218 84.9
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.5e-83 315.1 578 37.4
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 1.5e-75 288.5 152 89.5
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 3.7e-71 273.9 143 91.6
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.7e-58 230.3 171 69.6
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 1.2e-40 172.6 322 35.4
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.1e-38 166.0 88 87.5
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.6e-37 162.2 98 78.6
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 4.3e-35 154.1 80 90.0
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 1.1e-27 129.4 70 87.1
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 9.6e-27 126.3 80 75.0
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 8.1e-26 123.2 71 84.5
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 1.2e-21 109.4 69 75.4
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 3.5e-21 107.8 70 77.1
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 4.6e-21 107.5 69 71.0
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 3.0e-20 104.8 108 53.7
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 5.1e-20 104.0 73 76.7
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 8.1e-18 96.7 67 71.6
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.4e-17 95.9 222 33.8
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 6.9e-17 93.6 67 68.7
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 1.5e-16 92.4 85 55.3
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 1.9e-14 85.5 49 91.8
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 5.5e-14 84.0 85 50.6
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 2.3e-12 78.6 61 62.3
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 3.9e-12 77.8 47 76.6
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.3e-10 72.8 43 74.4
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 2.8e-10 71.6 41 80.5
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.7e-10 71.2 47 70.2
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.4e-09 69.3 46 69.6
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.8e-09 68.9 45 71.1
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 7.6e-08 63.5 33 87.9
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 1.3e-07 62.8 81 39.5


User provided reference genes

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