Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 5.1e-179 630.9 316 100.0
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 3.9e-163 578.2 314 93.0
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 8.8e-163 577.0 314 93.0
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 9.1e-160 567.0 312 91.7
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 9.1e-160 567.0 306 93.1
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 1.5e-133 479.9 317 77.6
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 2.0e-130 469.5 317 75.1
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 1.6e-119 433.3 317 67.5
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 3.3e-117 425.6 314 67.2
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 4.3e-109 398.7 315 63.2
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 1.2e-108 397.1 316 63.9
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 4.0e-107 392.1 212 93.9
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 6.8e-107 391.3 319 61.8
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 2.6e-106 389.4 318 62.9
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.7e-105 386.7 319 62.1
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 6.4e-105 384.8 319 63.0
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.4e-104 383.6 319 61.4
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 3.2e-104 382.5 317 62.1
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 4.1e-104 382.1 326 61.0
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 7.1e-104 381.3 324 60.8
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 1.2e-103 380.6 324 60.8
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 7.8e-103 377.9 318 62.3
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 1.0e-102 377.5 317 61.2
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.7e-102 376.7 321 61.4
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 5.1e-102 375.2 272 69.1
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.1e-101 374.0 316 61.4
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.5e-101 373.6 326 61.0
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 4.3e-101 372.1 317 58.7
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 5.6e-101 371.7 318 61.6
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.2e-100 370.5 326 59.8
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.6e-100 370.2 315 60.6
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.6e-100 370.2 319 59.9
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 3.6e-100 369.0 318 61.6
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 4.7e-100 368.6 318 61.6
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 3.1e-99 365.9 309 59.5
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 6.8e-99 364.8 292 63.4
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 1.5e-98 363.6 316 60.8
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 2.0e-98 363.2 318 57.5
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 7.6e-98 361.3 316 60.1
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 9.9e-98 360.9 328 57.0
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 1.7e-97 360.1 318 61.0
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 3.7e-97 359.0 283 61.5
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 3.7e-97 359.0 318 57.9
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.1e-96 357.5 316 59.2
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.9e-96 356.7 374 51.1
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 2.4e-96 356.3 320 59.4
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 5.4e-96 355.1 348 54.6
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 9.2e-96 354.4 323 60.7
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 9.2e-96 354.4 323 60.7
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 2.1e-95 353.2 309 58.9
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.7e-95 352.8 315 58.1
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 4.6e-95 352.1 342 55.6
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 6.0e-95 351.7 333 55.9
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 7.8e-95 351.3 349 54.2
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.0e-94 350.9 318 58.5
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 1.3e-94 350.5 316 60.4
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 1.3e-94 350.5 347 54.2
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 3.0e-94 349.4 315 59.4
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 3.9e-94 349.0 349 54.4
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 3.9e-94 349.0 349 54.4
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 8.6e-94 347.8 293 59.4
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.1e-93 347.4 320 57.2
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 1.5e-93 347.1 331 53.5
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.9e-93 346.7 320 56.9
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 2.5e-93 346.3 308 58.8
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 4.3e-93 345.5 320 56.9
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 7.3e-93 344.7 323 60.1
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 7.3e-93 344.7 283 62.2
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 1.2e-92 344.0 317 57.1
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 1.2e-92 344.0 319 55.2
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 1.6e-92 343.6 312 57.7
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 3.6e-92 342.4 323 59.1
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 3.6e-92 342.4 261 67.4
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 4.7e-92 342.0 313 55.9
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 6.2e-92 341.7 321 55.8
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 8.1e-92 341.3 326 59.2
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 8.1e-92 341.3 326 59.2
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 1.1e-91 340.9 287 58.2
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 1.4e-91 340.5 317 55.8
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 1.8e-91 340.1 285 60.7
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 2.4e-91 339.7 326 59.2
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 2.4e-91 339.7 326 59.2
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 2.4e-91 339.7 325 56.0
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 4.0e-91 339.0 316 59.2
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 4.0e-91 339.0 262 64.1
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 4.0e-91 339.0 320 55.0
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 8.9e-91 337.8 269 65.4
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 2.0e-90 336.7 321 55.1
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 5.8e-90 335.1 317 57.4
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 5.8e-90 335.1 237 67.9
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 9.9e-90 334.3 261 65.5
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 1.3e-89 334.0 270 64.8
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.4e-88 330.5 320 57.8
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 9.3e-88 327.8 377 48.8
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 3.5e-87 325.9 339 53.4
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 3.5e-87 325.9 312 55.8
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 6.0e-87 325.1 363 52.3
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 6.0e-87 325.1 316 54.1
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 5.1e-86 322.0 248 66.5
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.5e-85 320.5 314 53.5
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 2.5e-85 319.7 356 50.0
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 9.6e-85 317.8 314 52.9
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 2.8e-84 316.2 207 73.4
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 1.7e-81 307.0 316 50.9
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 2.8e-76 289.7 236 59.7
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 8.1e-76 288.1 162 88.9
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 1.1e-75 287.7 322 51.9
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.1e-75 287.7 205 68.8
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.4e-75 287.3 323 52.3
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 5.3e-75 285.4 330 51.5
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 2.1e-71 273.5 216 62.5
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 1.4e-59 234.2 282 50.4
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 4.1e-59 232.6 268 46.6
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 9.0e-59 231.5 282 50.0
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 5.8e-58 228.8 219 52.1
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 1.3e-57 227.6 283 49.1
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.1e-56 224.6 260 48.5
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 1.0e-54 218.0 366 36.9
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 2.3e-54 216.9 286 47.6
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 3.0e-54 216.5 111 92.8
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 2.5e-53 213.4 231 47.6
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.9e-48 197.2 194 54.1
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 7.2e-48 195.3 207 54.1
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 1.6e-47 194.1 322 37.9
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.4e-46 191.0 217 49.3
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 7.2e-40 168.7 200 44.0
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 3.6e-39 166.4 399 34.6
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 2.3e-38 163.7 249 45.8
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 7.4e-37 158.7 247 35.2
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 2.8e-36 156.8 314 35.4
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 3.1e-35 153.3 189 48.1
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.5e-34 151.0 205 43.9
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.9e-33 146.7 122 57.4
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 3.3e-29 133.3 110 62.7
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 6.5e-25 119.0 322 31.7
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.8e-20 103.6 108 52.8
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 7.7e-18 95.5 196 30.6
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 7.5e-13 79.0 189 28.0
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 5.9e-10 69.3 43 65.1
Cre03.g181650 Chlamydomonas reinhardtii HOM05D005396 ORTHO05D006400 2.8e-07 60.5 151 25.2


User provided reference genes

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