Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 2.2e-48 195.3 96 100.0
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 1.3e-45 186.0 96 95.8
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.3e-45 186.0 96 95.8
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 1.7e-45 185.7 96 95.8
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.5e-44 181.8 96 94.8
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 9.5e-44 179.9 96 92.7
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 6.1e-43 177.2 96 90.6
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 8.0e-43 176.8 93 91.4
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.4e-42 176.0 92 92.4
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 4.0e-42 174.5 95 88.4
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 5.2e-42 174.1 94 89.4
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 8.9e-42 173.3 94 89.4
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 1.2e-41 172.9 96 87.5
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 2.0e-41 172.2 93 90.3
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 5.7e-41 170.6 93 89.2
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 7.5e-41 170.2 95 84.2
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 7.5e-41 170.2 92 90.2
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 7.5e-41 170.2 92 90.2
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 7.5e-41 170.2 92 89.1
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 9.8e-41 169.9 96 85.4
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.3e-40 169.5 93 88.2
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.3e-40 169.5 93 86.0
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.3e-40 169.5 94 85.1
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 1.3e-40 169.5 92 88.0
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.7e-40 169.1 123 74.8
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 2.2e-40 168.7 92 88.0
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 2.2e-40 168.7 93 87.1
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 2.8e-40 168.3 94 85.1
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 2.8e-40 168.3 92 89.1
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 4.9e-40 167.5 93 87.1
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 4.9e-40 167.5 93 87.1
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 4.9e-40 167.5 94 86.2
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 6.3e-40 167.2 94 86.2
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 8.3e-40 166.8 92 88.0
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.1e-39 166.4 93 86.0
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 1.4e-39 166.0 92 88.0
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 1.8e-39 165.6 94 84.0
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 2.4e-39 165.2 94 84.0
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 2.4e-39 165.2 95 86.3
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 2.4e-39 165.2 93 86.0
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 3.2e-39 164.9 92 87.0
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 4.1e-39 164.5 87 89.7
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 4.1e-39 164.5 94 87.2
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 4.1e-39 164.5 93 86.0
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 7.0e-39 163.7 93 86.0
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.2e-38 162.9 93 83.9
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 2.7e-38 161.8 92 83.7
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 2.7e-38 161.8 92 83.7
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.7e-38 161.8 93 84.9
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 2.7e-38 161.8 93 84.9
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 3.5e-38 161.4 87 88.5
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 3.5e-38 161.4 87 88.5
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 4.5e-38 161.0 93 84.9
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 4.5e-38 161.0 96 81.2
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 4.5e-38 161.0 85 91.8
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 5.9e-38 160.6 96 81.2
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 5.9e-38 160.6 93 84.9
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 7.8e-38 160.2 83 90.4
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 7.8e-38 160.2 87 88.5
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 1.0e-37 159.8 93 82.8
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 1.3e-37 159.5 93 82.8
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 1.7e-37 159.1 95 78.9
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 1.7e-37 159.1 93 81.7
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.3e-37 158.7 93 82.8
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 2.3e-37 158.7 84 90.5
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 3.9e-37 157.9 93 81.7
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 3.9e-37 157.9 96 79.2
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 5.0e-37 157.5 93 81.7
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 8.6e-37 156.8 93 81.7
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 8.6e-37 156.8 93 81.7
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 8.6e-37 156.8 85 88.2
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.1e-36 156.4 85 89.4
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.1e-36 156.4 85 89.4
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 2.5e-36 155.2 104 76.9
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 3.3e-36 154.8 93 79.6
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 4.3e-36 154.5 96 81.2
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 4.3e-36 154.5 96 81.2
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 5.6e-36 154.1 96 77.1
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.6e-35 152.5 96 76.0
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.6e-35 152.5 96 76.0
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 4.7e-35 151.0 101 77.2
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 6.1e-35 150.6 84 88.1
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 6.1e-35 150.6 84 88.1
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 6.1e-35 150.6 84 88.1
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.0e-34 149.8 96 76.0
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.4e-34 149.4 91 80.2
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 2.3e-34 148.7 85 85.9
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.1e-34 148.3 92 82.6
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 4.0e-34 147.9 92 76.1
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 4.0e-34 147.9 88 80.7
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 8.9e-34 146.7 84 85.7
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 2.0e-33 145.6 93 76.3
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 2.6e-33 145.2 96 72.9
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 4.4e-33 144.4 93 74.2
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 4.4e-33 144.4 96 72.9
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 1.7e-32 142.5 99 72.7
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 5.4e-31 137.5 85 74.1
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.0e-29 131.7 100 73.0
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 5.0e-29 131.0 75 85.3
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 1.5e-28 129.4 81 75.3
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 1.5e-28 129.4 74 83.8
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 2.5e-28 128.6 64 93.8
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 4.3e-28 127.9 72 86.1
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 7.3e-28 127.1 71 84.5
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 9.5e-28 126.7 77 84.4
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 1.6e-27 125.9 72 86.1
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 2.8e-27 125.2 83 74.7
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 5.2e-26 120.9 72 81.9
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 8.9e-26 120.2 73 79.5
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 4.4e-25 117.9 65 89.2
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 5.8e-25 117.5 74 78.4
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.3e-24 116.3 87 67.8
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.3e-24 116.3 87 67.8
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.9e-24 115.2 93 63.4
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 3.7e-24 114.8 80 68.8
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 1.1e-23 113.2 67 79.1
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 9.2e-23 110.2 65 81.5
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 1.0e-21 106.7 73 69.9
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 7.3e-20 100.5 83 55.4
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.1e-18 96.7 91 57.1
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 1.8e-18 95.9 91 49.5
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 2.0e-17 92.4 45 91.1
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 5.4e-15 84.3 60 71.7
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 7.1e-15 84.0 52 80.8
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 1.2e-14 83.2 85 47.1
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.9e-12 75.9 54 66.7
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 2.8e-11 72.0 43 81.4
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 1.4e-10 69.7 40 85.0
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.4e-09 65.1 44 75.0
FAN20G2981 Fragaria x ananassa HOM05D006077 ORTHO05D007499 7.1e-07 57.4 35 82.9
Aa31LG10G1230 Aethionema arabicum HOM05D006077 ORTHO05D007499 2.1e-06 55.8 97 39.2
Aa31sc1971G10 Aethionema arabicum HOM05D006077 ORTHO05D007499 2.7e-06 55.5 97 39.2


User provided reference genes

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