Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0050771 Rosa chinensis HOM05D000104 ORTHO05D004881 2.0e-65 252.3 125 100.0
RcHm_v2.0_Chr5g0050791 Rosa chinensis HOM05D000104 ORTHO05D004881 1.8e-63 245.7 122 98.4
FvH4_3g28110 Fragaria vesca HOM05D000104 ORTHO05D004881 3.2e-60 235.0 122 93.4
FAN11G2466 Fragaria x ananassa HOM05D000104 ORTHO05D004881 3.2e-60 235.0 122 93.4
FAN16G2830 Fragaria x ananassa HOM05D000104 ORTHO05D004881 2.7e-59 231.9 122 92.6
FAN21G2988 Fragaria x ananassa HOM05D000104 ORTHO05D004881 2.7e-59 231.9 122 92.6
FAN25G0427 Fragaria x ananassa HOM05D000104 ORTHO05D004881 1.1e-57 226.5 122 91.0
Prupe.4G258700 Prunus persica HOM05D000104 ORTHO05D004881 5.2e-42 174.5 129 72.9
QL01p017715 Quercus lobata HOM05D000104 ORTHO05D004881 3.8e-37 158.3 135 64.4
Haze_23201 Corylus avellana HOM05D000104 ORTHO05D004881 5.0e-37 157.9 135 65.9
Manes.02G141700 Manihot esculenta HOM05D000104 ORTHO05D004881 1.1e-36 156.8 134 65.7
MD11G1194800 Malus domestica HOM05D000104 ORTHO05D004881 3.3e-36 155.2 128 64.8
CiPaw.13G152700 Carya illinoinensis HOM05D000104 ORTHO05D004881 1.2e-35 153.3 136 64.0
Cfa009834 Carpinus fangiana HOM05D000104 ORTHO05D004881 2.1e-35 152.5 136 65.4
Thecc.09G243900 Theobroma cacao HOM05D000104 ORTHO05D004881 3.6e-35 151.8 135 63.7
MD03G1168800 Malus domestica HOM05D000104 ORTHO05D004881 1.0e-34 150.2 128 63.3
Gohir.A09G111200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 5.2e-34 147.9 134 62.7
Ciclev10014019m.g Citrus clementina HOM05D000104 ORTHO05D004881 7.5e-33 144.1 132 62.1
Gorai.006G125500 Gossypium raimondii HOM05D000104 ORTHO05D004881 2.8e-32 142.1 134 62.7
Cpa.g.sc892.1 Carica papaya HOM05D000104 ORTHO05D004881 3.7e-32 141.7 134 61.2
Manes.01G181800 Manihot esculenta HOM05D000104 ORTHO05D004881 3.7e-32 141.7 135 60.7
Gohir.A13G217600 Gossypium hirsutum HOM05D000104 ORTHO05D004881 1.4e-31 139.8 136 60.3
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.8e-31 139.4 135 57.8
COL.COLO4_07230 Corchorus olitorius HOM05D000104 ORTHO05D004881 2.4e-31 139.0 136 59.6
Gohir.D13G221200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 4.1e-31 138.3 135 60.0
Potri.001G253400 Populus trichocarpa HOM05D000104 ORTHO05D004881 4.1e-31 138.3 135 58.5
THA.LOC104826485 Tarenaya hassleriana HOM05D000104 ORTHO05D004881 1.2e-30 136.7 125 60.8
Gorai.013G252300 Gossypium raimondii HOM05D000104 ORTHO05D004881 1.6e-30 136.3 135 60.0
CANSAT54G1548 Cannabis sativa HOM05D000104 ORTHO05D004881 1.0e-29 133.7 130 61.5
Atru.chr3.2807 Acer truncatum HOM05D000104 ORTHO05D004881 1.3e-29 133.3 132 58.3
MELO3C014569.2 Cucumis melo HOM05D000104 ORTHO05D004881 1.7e-29 132.9 134 56.7
Lalb_Chr10g0106381 Lupinus albus HOM05D000104 ORTHO05D004881 3.8e-29 131.7 131 58.8
CsaV3_6G039100 Cucumis sativus L. HOM05D000104 ORTHO05D004881 5.0e-29 131.3 134 56.0
Potri.009G047800 Populus trichocarpa HOM05D000104 ORTHO05D004881 6.6e-29 131.0 131 59.5
Nn7g36507 Nelumbo nucifera HOM05D000104 ORTHO05D004881 1.5e-28 129.8 129 58.9
Glyma.02G281000 Glycine max HOM05D000104 ORTHO05D004881 2.5e-28 129.0 130 60.8
LjContig00049g0001527 Lotus japonicus HOM05D000104 ORTHO05D004881 2.5e-28 129.0 127 56.7
Dinv08770 Davidia involucrata HOM05D000104 ORTHO05D004881 5.6e-28 127.9 132 55.3
VMungo0647G0770 Vigna mungo HOM05D000104 ORTHO05D004881 7.3e-28 127.5 130 59.2
arahy.Tifrunner.gnm1.ann1.F2KJX5 Arachis hypogaea HOM05D000104 ORTHO05D004881 3.6e-27 125.2 131 56.5
arahy.Tifrunner.gnm1.ann1.Q1C604 Arachis hypogaea HOM05D000104 ORTHO05D004881 3.6e-27 125.2 131 56.5
Actinidia16360 Actinidia chinensis HOM05D000104 ORTHO05D004881 4.7e-27 124.8 134 56.0
Dinv36192 Davidia involucrata HOM05D000104 ORTHO05D004881 6.1e-27 124.4 130 53.8
Lalb_Chr04g0249101 Lupinus albus HOM05D000104 ORTHO05D004881 6.1e-27 124.4 130 55.4
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 6.1e-27 124.4 132 56.8
Glyma.14G033600 Glycine max HOM05D000104 ORTHO05D004881 8.0e-27 124.0 130 58.5
Nn2g13594 Nelumbo nucifera HOM05D000104 ORTHO05D004881 5.2e-26 121.3 129 56.6
Ca_06225_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004881 6.8e-26 120.9 129 57.4
Phvul.008G199800 Phaseolus vulgaris HOM05D000104 ORTHO05D004881 6.8e-26 120.9 129 56.6
Medtr3g053910 Medicago truncatula HOM05D000104 ORTHO05D004881 2.6e-25 119.0 132 56.1
Sc09g0000940 Simmondsia chinensis HOM05D000104 ORTHO05D004881 5.8e-25 117.9 131 58.8
TAR636G3192 Trochodendron aralioides HOM05D000104 ORTHO05D004881 7.5e-25 117.5 133 54.1
Sed0002979 Sechium edule HOM05D000104 ORTHO05D004881 2.2e-24 115.9 130 56.2
AL3G45270 Arabidopsis lyrata HOM05D000104 ORTHO05D004881 2.9e-24 115.5 125 56.0
CSS0005534 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 3.7e-24 115.2 129 55.0
CSS0013867 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 3.7e-24 115.2 129 55.0
Carub.0003s2790 Capsella rubella HOM05D000104 ORTHO05D004881 1.1e-23 113.6 125 55.2
TPR.G26010 Trifolium pratense HOM05D000104 ORTHO05D004881 1.4e-23 113.2 128 53.1
Aa31sc426G10 Aethionema arabicum HOM05D000104 ORTHO05D004881 1.9e-23 112.8 123 52.0
CARHR105150 Cardamine hirsuta HOM05D000104 ORTHO05D004881 1.9e-23 112.8 125 55.2
PGR119G1457 Punica granatum HOM05D000104 ORTHO05D004881 1.9e-23 112.8 132 52.3
EL10Ac4g10173 Beta vulgaris HOM05D000104 ORTHO05D004881 3.2e-23 112.1 132 53.0
TWI75G1602 Tripterygium wilfordii HOM05D000104 ORTHO05D004881 4.1e-23 111.7 131 54.2
Hund07450 Selenicereus undatus HOM05D000104 ORTHO05D004881 7.0e-23 110.9 132 51.5
Rhsim13G0216000 Rhododendron simsii HOM05D000104 ORTHO05D004881 1.2e-22 110.2 131 51.1
Psat2g019600 Pisum sativum HOM05D000104 ORTHO05D004881 2.7e-22 109.0 129 54.3
Ah.06g194420 Amaranthus hybridus HOM05D000104 ORTHO05D004881 4.6e-22 108.2 131 53.4
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 7.8e-22 107.5 132 50.8
AUR62039837 Chenopodium quinoa HOM05D000104 ORTHO05D004881 7.8e-22 107.5 132 50.8
Cc01_g05810 Coffea canephora HOM05D000104 ORTHO05D004881 1.0e-21 107.1 131 52.7
AT2G13370 Arabidopsis thaliana HOM05D000104 ORTHO05D004881 1.7e-21 106.3 125 51.2
Sp3g26880 Schrenkiella parvula HOM05D000104 ORTHO05D004881 3.9e-21 105.1 126 52.4
Thhalv10022519m.g Eutrema salsugineum HOM05D000104 ORTHO05D004881 6.6e-21 104.4 126 52.4
Aqoxy2G00308 Aquilegia oxysepala HOM05D000104 ORTHO05D004881 1.1e-20 103.6 134 48.5
GSVIVG01037235001 Vitis vinifera HOM05D000104 ORTHO05D004881 1.1e-20 103.6 133 48.9
BcaC04g23082 Brassica carinata HOM05D000104 ORTHO05D004881 7.3e-20 100.9 126 52.4
C09p12330 Brassica napus HOM05D000104 ORTHO05D004881 7.3e-20 100.9 126 52.4
BolC9t54126H Brassica oleracea HOM05D000104 ORTHO05D004881 7.3e-20 100.9 126 52.4
Nitab4.5_0001925g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004881 7.3e-20 100.9 131 52.7
vmacro04008 Vaccinium macrocarpon HOM05D000104 ORTHO05D004881 7.3e-20 100.9 134 47.8
Lsat_1_v5_gn_2_38240 Lactuca sativa HOM05D000104 ORTHO05D004881 9.5e-20 100.5 135 51.1
Psat5g195000 Pisum sativum HOM05D000104 ORTHO05D004881 3.6e-19 98.6 132 48.5
Psat4g095280 Pisum sativum HOM05D000104 ORTHO05D004881 4.7e-19 98.2 132 48.5
A09p10390 Brassica napus HOM05D000104 ORTHO05D004881 6.2e-19 97.8 126 51.6
BraA09t36683Z Brassica rapa HOM05D000104 ORTHO05D004881 6.2e-19 97.8 126 51.6
Migut.N02364 Erythranthe guttata HOM05D000104 ORTHO05D004881 6.8e-18 94.4 123 51.2
Solyc12g099910.2 Solanum lycopersicum HOM05D000104 ORTHO05D004881 6.8e-18 94.4 131 51.1
Sopen12g034530 Solanum pennellii HOM05D000104 ORTHO05D004881 8.9e-18 94.0 131 51.1
SGA_v2.0_scaffold3G01470 Striga asiatica HOM05D000104 ORTHO05D004881 1.2e-17 93.6 127 48.0
PGSC0003DMG400004650 Solanum tuberosum HOM05D000104 ORTHO05D004881 1.5e-17 93.2 131 51.1
Peaxi162Scf00062g00086 Petunia axillaris HOM05D000104 ORTHO05D004881 2.0e-17 92.8 131 48.9
MBI13_g29528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004881 3.4e-17 92.0 140 44.3
Lj1C295T5 Lonicera japonica HOM05D000104 ORTHO05D004881 9.8e-17 90.5 130 46.9
Oeu010657.1 Olea europaea HOM05D000104 ORTHO05D004881 9.8e-17 90.5 132 48.5
PSO384G4411 Papaver somniferum HOM05D000104 ORTHO05D004881 9.8e-17 90.5 133 45.1
ATR0721G152 Amborella trichopoda HOM05D000104 ORTHO05D004881 1.7e-16 89.7 142 43.0
BcaB02g11515 Brassica carinata HOM05D000104 ORTHO05D004881 1.7e-16 89.7 125 49.6
Lj1C304T4 Lonicera japonica HOM05D000104 ORTHO05D004881 4.9e-16 88.2 130 46.2
PSO339G0098 Papaver somniferum HOM05D000104 ORTHO05D004881 6.4e-16 87.8 132 44.7
SEGI_37148 Sequoiadendron giganteum HOM05D000104 ORTHO05D004881 6.4e-16 87.8 141 43.3
CAN.G484.5 Capsicum annuum HOM05D000104 ORTHO05D004881 3.2e-15 85.5 131 47.3
Lsat_1_v5_gn_4_146300 Lactuca sativa HOM05D000104 ORTHO05D004881 1.6e-14 83.2 130 47.7
ECA233G4577 Erigeron canadensis HOM05D000104 ORTHO05D004881 2.7e-14 82.4 133 42.9
unitig_699.g19140 Utricularia gibba HOM05D000104 ORTHO05D004881 2.7e-14 82.4 128 46.1
CDE08G1000 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 3.5e-14 82.0 131 44.3
HanXRQChr12g0357371 Helianthus annuus HOM05D000104 ORTHO05D004881 4.6e-14 81.6 124 46.0
CDE09G0540 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 6.0e-14 81.3 131 44.3
HanXRQChr14g0433041 Helianthus annuus HOM05D000104 ORTHO05D004881 6.0e-14 81.3 122 45.1
Nitab4.5_0011766g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004881 7.8e-14 80.9 108 50.9
DCAR_002093 Daucus carota HOM05D000104 ORTHO05D004881 5.1e-13 78.2 123 44.7
HPP92_006716 Vanilla planifolia HOM05D000104 ORTHO05D004881 5.6e-12 74.7 128 43.0
Glyma.08G302767 Glycine max HOM05D000104 ORTHO05D004881 7.3e-12 74.3 70 60.0
Pp3c5_19940 Physcomitrium patens HOM05D000104 ORTHO05D004881 1.2e-11 73.6 113 45.1
Zm00001eb110770 Zea mays HOM05D000104 ORTHO05D004881 1.6e-11 73.2 130 40.0
Pp3c6_10390 Physcomitrium patens HOM05D000104 ORTHO05D004881 2.6e-09 65.9 120 40.0


User provided reference genes

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