Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0045151 Rosa chinensis HOM05D000227 ORTHO05D004136 1.9e-37 158.7 79 100.0
RcHm_v2.0_Chr3g0455101 Rosa chinensis HOM05D000227 ORTHO05D004136 9.0e-24 113.2 78 78.2
RcHm_v2.0_Chr6g0299731 Rosa chinensis HOM05D000227 ORTHO05D004136 5.3e-16 87.4 53 79.2
RcHm_v2.0_Chr7g0201611 Rosa chinensis HOM05D000227 ORTHO05D004136 5.1e-11 70.9 52 73.1
Prupe.5G079300 Prunus persica HOM05D000227 ORTHO05D004136 1.1e-10 69.7 52 71.2
FvH4_5g00650 Fragaria vesca HOM05D000227 ORTHO05D004136 2.5e-10 68.6 52 71.2
FAN04G0173 Fragaria x ananassa HOM05D000227 ORTHO05D004136 2.5e-10 68.6 52 71.2
FAN08G0403 Fragaria x ananassa HOM05D000227 ORTHO05D004136 2.5e-10 68.6 52 71.2
FAN13G2301 Fragaria x ananassa HOM05D000227 ORTHO05D004136 2.5e-10 68.6 52 71.2
FAN18G1696 Fragaria x ananassa HOM05D000227 ORTHO05D004136 2.5e-10 68.6 52 71.2
C08p47450 Brassica napus HOM05D000227 ORTHO05D004136 4.3e-10 67.8 53 66.0
Duzib084G0929 Durio zibethinus HOM05D000227 ORTHO05D004136 5.6e-10 67.4 52 69.2
MD03G1151100 Malus domestica HOM05D000227 ORTHO05D004136 5.6e-10 67.4 52 69.2
MD04G1079800 Malus domestica HOM05D000227 ORTHO05D004136 5.6e-10 67.4 52 69.2
MD07G1265800 Malus domestica HOM05D000227 ORTHO05D004136 5.6e-10 67.4 52 69.2
MD17G1283300 Malus domestica HOM05D000227 ORTHO05D004136 5.6e-10 67.4 52 69.2
Medtr5g011850 Medicago truncatula HOM05D000227 ORTHO05D004136 9.6e-10 66.6 46 73.9
Cfa012801 Carpinus fangiana HOM05D000227 ORTHO05D004136 1.3e-09 66.2 52 67.3
CiPaw.11G147700 Carya illinoinensis HOM05D000227 ORTHO05D004136 1.3e-09 66.2 52 67.3
CiPaw.12G105200 Carya illinoinensis HOM05D000227 ORTHO05D004136 1.3e-09 66.2 52 67.3
COL.COLO4_23883 Corchorus olitorius HOM05D000227 ORTHO05D004136 1.3e-09 66.2 52 67.3
Haze_08612 Corylus avellana HOM05D000227 ORTHO05D004136 1.3e-09 66.2 52 67.3
Duzib205G1358 Durio zibethinus HOM05D000227 ORTHO05D004136 1.3e-09 66.2 52 67.3
QL12p014949 Quercus lobata HOM05D000227 ORTHO05D004136 1.3e-09 66.2 52 67.3
Thecc.03G261600 Theobroma cacao HOM05D000227 ORTHO05D004136 1.3e-09 66.2 52 67.3
VMungo0331G1393 Vigna mungo HOM05D000227 ORTHO05D004136 1.3e-09 66.2 52 67.3
TAR375G0935 Trochodendron aralioides HOM05D000227 ORTHO05D004136 1.6e-09 65.9 42 73.8
Aa31LG6G4670 Aethionema arabicum HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
AL1G23640 Arabidopsis lyrata HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
AT1G12310 Arabidopsis thaliana HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
BcaB07g31811 Brassica carinata HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
BcaC07g41706 Brassica carinata HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
A06p09280 Brassica napus HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
A09p63910 Brassica napus HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
C05p10840 Brassica napus HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
BolC8t52285H Brassica oleracea HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
BraA06t24114Z Brassica rapa HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
BraA09t41739Z Brassica rapa HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
Carub.0001s1198 Capsella rubella HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
CARHR012610 Cardamine hirsuta HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
Ca_06692_v3 Cicer arietinum L. HOM05D000227 ORTHO05D004136 2.1e-09 65.5 46 71.7
Thhalv10009022m.g Eutrema salsugineum HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
Lalb_Chr05g0214631 Lupinus albus HOM05D000227 ORTHO05D004136 2.1e-09 65.5 46 71.7
Psat2g179360 Pisum sativum HOM05D000227 ORTHO05D004136 2.1e-09 65.5 46 71.7
Sp1g10930 Schrenkiella parvula HOM05D000227 ORTHO05D004136 2.1e-09 65.5 52 65.4
GSVIVG01004914001 Vitis vinifera HOM05D000227 ORTHO05D004136 2.1e-09 65.5 46 71.7
Atru.chr9.1429 Acer truncatum HOM05D000227 ORTHO05D004136 2.8e-09 65.1 52 65.4
CANSAT21G2084 Cannabis sativa HOM05D000227 ORTHO05D004136 2.8e-09 65.1 46 71.7
Ciclev10022955m.g Citrus clementina HOM05D000227 ORTHO05D004136 2.8e-09 65.1 52 67.3
Duzib068G1435 Durio zibethinus HOM05D000227 ORTHO05D004136 2.8e-09 65.1 52 65.4
Glyma.11G030100 Glycine max HOM05D000227 ORTHO05D004136 2.8e-09 65.1 52 65.4
MD06G1074600 Malus domestica HOM05D000227 ORTHO05D004136 2.8e-09 65.1 52 65.4
Aqoxy7G00653 Aquilegia oxysepala HOM05D000227 ORTHO05D004136 3.7e-09 64.7 42 71.4
Lj2g0015453 Lotus japonicus HOM05D000227 ORTHO05D004136 3.7e-09 64.7 46 69.6
Lalb_Chr16g0379781 Lupinus albus HOM05D000227 ORTHO05D004136 3.7e-09 64.7 46 69.6
Phvul.002G060300 Phaseolus vulgaris HOM05D000227 ORTHO05D004136 3.7e-09 64.7 52 65.4
THA.LOC104818418 Tarenaya hassleriana HOM05D000227 ORTHO05D004136 3.7e-09 64.7 52 65.4
MELO3C013982.2 Cucumis melo HOM05D000227 ORTHO05D004136 4.8e-09 64.3 52 67.3
Lalb_Chr09g0324501 Lupinus albus HOM05D000227 ORTHO05D004136 4.8e-09 64.3 46 71.7
Potri.003G115000 Populus trichocarpa HOM05D000227 ORTHO05D004136 4.8e-09 64.3 47 68.1
Gohir.A12G220800 Gossypium hirsutum HOM05D000227 ORTHO05D004136 6.2e-09 63.9 52 65.4
Gohir.D12G223100 Gossypium hirsutum HOM05D000227 ORTHO05D004136 6.2e-09 63.9 52 65.4
Gorai.008G239400 Gossypium raimondii HOM05D000227 ORTHO05D004136 6.2e-09 63.9 52 65.4
Manes.02G033700 Manihot esculenta HOM05D000227 ORTHO05D004136 6.2e-09 63.9 52 65.4
Nn1g01259 Nelumbo nucifera HOM05D000227 ORTHO05D004136 6.2e-09 63.9 52 63.5
PSO478G4245 Papaver somniferum HOM05D000227 ORTHO05D004136 6.2e-09 63.9 46 67.4
PSO782G5533 Papaver somniferum HOM05D000227 ORTHO05D004136 6.2e-09 63.9 46 67.4
Sc13g0007760 Simmondsia chinensis HOM05D000227 ORTHO05D004136 6.2e-09 63.9 46 69.6
THA.LOC104809447 Tarenaya hassleriana HOM05D000227 ORTHO05D004136 6.2e-09 63.9 48 64.6
TAR374G0052 Trochodendron aralioides HOM05D000227 ORTHO05D004136 6.2e-09 63.9 52 67.3
BcaC05g25213 Brassica carinata HOM05D000227 ORTHO05D004136 8.1e-09 63.5 52 63.5
BolC5t29829H Brassica oleracea HOM05D000227 ORTHO05D004136 8.1e-09 63.5 52 63.5
Duzib106G0535 Durio zibethinus HOM05D000227 ORTHO05D004136 8.1e-09 63.5 53 64.2
Glyma.01G211700 Glycine max HOM05D000227 ORTHO05D004136 8.1e-09 63.5 52 63.5
TAR636G1788 Trochodendron aralioides HOM05D000227 ORTHO05D004136 8.1e-09 63.5 52 61.5
CDE11G0459 Ceratophyllum demersum HOM05D000227 ORTHO05D004136 1.1e-08 63.2 46 69.6
CsaV3_3G003160 Cucumis sativus L. HOM05D000227 ORTHO05D004136 1.1e-08 63.2 52 65.4
PGR031G1980 Punica granatum HOM05D000227 ORTHO05D004136 1.1e-08 63.2 46 67.4
Sed0001382 Sechium edule HOM05D000227 ORTHO05D004136 1.1e-08 63.2 52 65.4
Carub.0002s0216 Capsella rubella HOM05D000227 ORTHO05D004136 1.4e-08 62.8 52 61.5
CARHR229630 Cardamine hirsuta HOM05D000227 ORTHO05D004136 1.4e-08 62.8 46 67.4
ClCG10G003120 Citrullus lanatus HOM05D000227 ORTHO05D004136 1.4e-08 62.8 52 65.4
Eucgr.D01990 Eucalyptus grandis HOM05D000227 ORTHO05D004136 1.4e-08 62.8 52 61.5
Manes.01G073900 Manihot esculenta HOM05D000227 ORTHO05D004136 1.4e-08 62.8 65 58.5
Nn1g01260 Nelumbo nucifera HOM05D000227 ORTHO05D004136 1.4e-08 62.8 46 65.2
Potri.001G117900 Populus trichocarpa HOM05D000227 ORTHO05D004136 1.4e-08 62.8 47 66.0
THA.LOC104823556 Tarenaya hassleriana HOM05D000227 ORTHO05D004136 1.4e-08 62.8 52 61.5
TWI60G1653 Tripterygium wilfordii HOM05D000227 ORTHO05D004136 1.4e-08 62.8 52 63.5
AT1G62820 Arabidopsis thaliana HOM05D000227 ORTHO05D004136 1.8e-08 62.4 52 61.5
AUR62016114 Chenopodium quinoa HOM05D000227 ORTHO05D004136 1.8e-08 62.4 39 74.4
AUR62035060 Chenopodium quinoa HOM05D000227 ORTHO05D004136 1.8e-08 62.4 39 74.4
Phvul.003G214700 Phaseolus vulgaris HOM05D000227 ORTHO05D004136 1.8e-08 62.4 52 61.5
Aa31LG2G350 Aethionema arabicum HOM05D000227 ORTHO05D004136 2.4e-08 62.0 52 63.5
Cpa.g.sc29.93 Carica papaya HOM05D000227 ORTHO05D004136 2.4e-08 62.0 46 67.4
SHI20488 Sapria himalayana HOM05D000227 ORTHO05D004136 2.4e-08 62.0 46 65.2
VMungo1215G0317 Vigna mungo HOM05D000227 ORTHO05D004136 2.4e-08 62.0 52 61.5
Actinidia25031 Actinidia chinensis HOM05D000227 ORTHO05D004136 3.1e-08 61.6 46 65.2
Ah.07g208170 Amaranthus hybridus HOM05D000227 ORTHO05D004136 3.1e-08 61.6 39 74.4
MSTRG.27179 Avicennia marina HOM05D000227 ORTHO05D004136 3.1e-08 61.6 46 67.4
Cc02_g03980 Coffea canephora HOM05D000227 ORTHO05D004136 3.1e-08 61.6 46 67.4
Gohir.A11G322700 Gossypium hirsutum HOM05D000227 ORTHO05D004136 3.1e-08 61.6 65 56.9
HanXRQChr05g0142361 Helianthus annuus HOM05D000227 ORTHO05D004136 3.1e-08 61.6 52 59.6
TPR.G19687 Trifolium pratense HOM05D000227 ORTHO05D004136 3.1e-08 61.6 46 69.6
TWI81G0057 Tripterygium wilfordii HOM05D000227 ORTHO05D004136 3.1e-08 61.6 52 61.5
unitig_37.g11934 Utricularia gibba HOM05D000227 ORTHO05D004136 3.1e-08 61.6 46 67.4
unitig_92.g28268 Utricularia gibba HOM05D000227 ORTHO05D004136 3.1e-08 61.6 46 67.4
AL2G12950 Arabidopsis lyrata HOM05D000227 ORTHO05D004136 4.0e-08 61.2 52 61.5
EL10Ac3g05804 Beta vulgaris HOM05D000227 ORTHO05D004136 4.0e-08 61.2 39 71.8
BcaB03g13196 Brassica carinata HOM05D000227 ORTHO05D004136 4.0e-08 61.2 46 65.2
A08p32900 Brassica napus HOM05D000227 ORTHO05D004136 4.0e-08 61.2 46 65.2
C08p15360 Brassica napus HOM05D000227 ORTHO05D004136 4.0e-08 61.2 46 65.2
BolC8t49164H Brassica oleracea HOM05D000227 ORTHO05D004136 4.0e-08 61.2 46 65.2
BraA08t35212Z Brassica rapa HOM05D000227 ORTHO05D004136 4.0e-08 61.2 46 65.2
Gohir.D09G189300 Gossypium hirsutum HOM05D000227 ORTHO05D004136 4.0e-08 61.2 65 55.4
Hund11798 Selenicereus undatus HOM05D000227 ORTHO05D004136 4.0e-08 61.2 39 74.4
Solyc11g072270.3 Solanum lycopersicum HOM05D000227 ORTHO05D004136 4.0e-08 61.2 64 53.1
DCAR_020203 Daucus carota HOM05D000227 ORTHO05D004136 5.3e-08 60.8 46 63.0
Nitab4.5_0000205g0090 Nicotiana tabacum HOM05D000227 ORTHO05D004136 5.3e-08 60.8 65 56.9
TAR629G1241 Trochodendron aralioides HOM05D000227 ORTHO05D004136 5.3e-08 60.8 46 65.2
CSS0025958 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004136 6.9e-08 60.5 46 65.2
Dinv28541 Davidia involucrata HOM05D000227 ORTHO05D004136 6.9e-08 60.5 46 65.2
Migut.F00440 Erythranthe guttata HOM05D000227 ORTHO05D004136 6.9e-08 60.5 46 65.2
Migut.F01173 Erythranthe guttata HOM05D000227 ORTHO05D004136 6.9e-08 60.5 46 65.2
Nitab4.5_0000205g0080 Nicotiana tabacum HOM05D000227 ORTHO05D004136 6.9e-08 60.5 46 65.2
Nitab4.5_0000205g0140 Nicotiana tabacum HOM05D000227 ORTHO05D004136 6.9e-08 60.5 46 65.2
Oeu042581.1 Olea europaea HOM05D000227 ORTHO05D004136 6.9e-08 60.5 46 65.2
Peaxi162Scf01372g00023 Petunia axillaris HOM05D000227 ORTHO05D004136 6.9e-08 60.5 47 61.7
SGA_v2.0_scaffold2G01163 Striga asiatica HOM05D000922 ORTHO05D004136 6.9e-08 60.5 46 65.2
SGA_v2.0_scaffold486G52385 Striga asiatica HOM05D000922 ORTHO05D001851 6.9e-08 60.5 46 65.2
HPP92_014609 Vanilla planifolia HOM05D000227 ORTHO05D004136 6.9e-08 60.5 48 60.4
Gohir.A09G194950 Gossypium hirsutum HOM05D000227 ORTHO05D004136 9.0e-08 60.1 65 56.9
Lj8C38T4 Lonicera japonica HOM05D000227 ORTHO05D004136 9.0e-08 60.1 46 60.9
Nitab4.5_0018910g0010 Nicotiana tabacum HOM05D000227 ORTHO05D004136 9.0e-08 60.1 65 56.9
Oeu028176.1 Olea europaea HOM05D000227 ORTHO05D004136 9.0e-08 60.1 52 59.6
SalBow4G1771 Salvia bowleyana HOM05D000227 ORTHO05D004136 9.0e-08 60.1 46 67.4
SalBow4G2666 Salvia bowleyana HOM05D000227 ORTHO05D004136 9.0e-08 60.1 46 67.4
Sopen11g029940 Solanum pennellii HOM05D000227 ORTHO05D004136 9.0e-08 60.1 64 51.6
PGSC0003DMG400027382 Solanum tuberosum HOM05D000227 ORTHO05D004136 9.0e-08 60.1 64 51.6
MSTRG.8419 Avicennia marina HOM05D000227 ORTHO05D004136 1.2e-07 59.7 46 63.0
ECA233G0919 Erigeron canadensis HOM05D000227 ORTHO05D004136 1.2e-07 59.7 46 60.9
Gorai.006G211900 Gossypium raimondii HOM05D000227 ORTHO05D004136 1.2e-07 59.7 63 54.0
Lsat_1_v5_gn_8_9421 Lactuca sativa HOM05D000227 ORTHO05D004136 1.2e-07 59.7 46 60.9
Nn4g26374 Nelumbo nucifera HOM05D000227 ORTHO05D004136 1.2e-07 59.7 46 60.9
Actinidia13559 Actinidia chinensis HOM05D000227 ORTHO05D004136 1.5e-07 59.3 46 63.0
Dinv22973 Davidia involucrata HOM05D000227 ORTHO05D004136 1.5e-07 59.3 46 63.0
Hma1.2p1_0099F.1_g049010 Hydrangea macrophylla HOM05D000227 ORTHO05D004136 1.5e-07 59.3 46 63.0
Hma1.2p1_0654F.1_g196440 Hydrangea macrophylla HOM05D000227 ORTHO05D004136 1.5e-07 59.3 46 63.0
Peaxi162Scf00234g00074 Petunia axillaris HOM05D000227 ORTHO05D004136 1.5e-07 59.3 46 63.0
Rhsim03G0170800 Rhododendron simsii HOM05D000922 ORTHO05D004136 1.5e-07 59.3 46 63.0
Rhsim09G0193000 Rhododendron simsii HOM05D000227 ORTHO05D004136 1.5e-07 59.3 46 63.0
MBI12_g31647_MAGBIO Magnolia biondii HOM05D000227 ORTHO05D004136 2.0e-07 58.9 52 59.6
MBI12_g40165_MAGBIO Magnolia biondii HOM05D000227 ORTHO05D004136 2.0e-07 58.9 52 59.6
CSS0026594 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D004136 2.6e-07 58.5 46 63.0
Gohir.D11G341800 Gossypium hirsutum HOM05D000227 ORTHO05D004136 2.6e-07 58.5 46 63.0
Gorai.007G371800 Gossypium raimondii HOM05D000227 ORTHO05D004136 2.6e-07 58.5 46 63.0
Solyc03g083520.4 Solanum lycopersicum HOM05D000227 ORTHO05D004136 2.6e-07 58.5 46 60.9
Sopen03g023330 Solanum pennellii HOM05D000227 ORTHO05D004136 2.6e-07 58.5 46 60.9
CAN.G152.23 Capsicum annuum HOM05D000227 ORTHO05D004136 3.4e-07 58.2 46 60.9
ATR0757G043 Amborella trichopoda HOM05D000227 ORTHO05D004136 4.5e-07 57.8 45 64.4
HanXRQChr08g0223571 Helianthus annuus HOM05D000227 ORTHO05D004136 5.8e-07 57.4 46 58.7
Lsat_1_v5_gn_2_129361 Lactuca sativa HOM05D000227 ORTHO05D004136 5.8e-07 57.4 46 58.7
Nitab4.5_0000262g0200 Nicotiana tabacum HOM05D000227 ORTHO05D004136 5.8e-07 57.4 46 63.0
Nitab4.5_0003732g0030 Nicotiana tabacum HOM05D000227 ORTHO05D004136 5.8e-07 57.4 46 63.0
HanXRQChr14g0461701 Helianthus annuus HOM05D000227 ORTHO05D004136 1.3e-06 56.2 46 56.5
Ah.12g058250 Amaranthus hybridus HOM05D000227 ORTHO05D004136 2.9e-06 55.1 66 47.0
Os08g0117400 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D004136 2.9e-06 55.1 45 57.8
DCAR_009425 Daucus carota HOM05D000227 ORTHO05D004136 3.8e-06 54.7 46 54.3
TWI15G1106 Tripterygium wilfordii HOM05D000227 ORTHO05D004136 3.8e-06 54.7 46 60.9
EL10Ac5g12611 Beta vulgaris HOM05D000227 ORTHO05D004136 6.4e-06 53.9 39 59.0
Oeu021719.1 Olea europaea HOM05D000227 ORTHO05D004136 6.4e-06 53.9 42 64.3


User provided reference genes

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