Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0044411 Rosa chinensis HOM05D000347 ORTHO05D001997 3.3e-23 110.9 59 100.0
Lj9C312G10 Lonicera japonica HOM05D000347 ORTHO05D001997 1.5e-12 75.5 37 89.2
AL8G34330 Arabidopsis lyrata HOM05D000347 ORTHO05D001997 5.9e-12 73.6 37 86.5
AT5G58230 Arabidopsis thaliana HOM05D000347 ORTHO05D001997 5.9e-12 73.6 37 86.5
CAN.G1352.19 Capsicum annuum HOM05D000347 ORTHO05D001997 5.9e-12 73.6 37 86.5
CARHR272030 Cardamine hirsuta HOM05D000347 ORTHO05D001997 5.9e-12 73.6 37 86.5
Thhalv10013638m.g Eutrema salsugineum HOM05D000347 ORTHO05D001997 5.9e-12 73.6 37 86.5
Sp6g19890 Schrenkiella parvula HOM05D000347 ORTHO05D001997 5.9e-12 73.6 37 86.5
Solyc01g104510.3 Solanum lycopersicum HOM05D000347 ORTHO05D001997 5.9e-12 73.6 37 86.5
Sopen01g047010 Solanum pennellii HOM05D000347 ORTHO05D001997 5.9e-12 73.6 37 86.5
PGSC0003DMG400023743 Solanum tuberosum HOM05D000347 ORTHO05D001997 5.9e-12 73.6 37 86.5
Atru.chr11.1239 Acer truncatum HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
CSS0003571 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
CSS0004042 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
CSS0006182 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
CSS0018416 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
CSS0030733 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
CSS0038685 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
CANSAT35G1460 Cannabis sativa HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Carub.0008s1877 Capsella rubella HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Cpa.g.sc41.39 Carica papaya HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
CiPaw.13G019800 Carya illinoinensis HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
CiPaw.14G013900 Carya illinoinensis HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
ClCG05G002740 Citrullus lanatus HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Ciclev10020286m.g Citrus clementina HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
MELO3C006243.2 Cucumis melo HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
CsaV3_3G010230 Cucumis sativus L. HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Dinv19349 Davidia involucrata HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
FvH4_7g08380 Fragaria vesca HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
FAN01G2807 Fragaria x ananassa HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
FAN03G0015 Fragaria x ananassa HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
FAN06G2384 Fragaria x ananassa HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Lj9C310G3 Lonicera japonica HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Lj9C312G3 Lonicera japonica HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Lalb_Chr12g0209011 Lupinus albus HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
MD02G1228600 Malus domestica HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
MD07G1083900 Malus domestica HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Manes.05G060600 Manihot esculenta HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Manes.11G162700 Manihot esculenta HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Nitab4.5_0004005g0020 Nicotiana tabacum HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Nitab4.5_0005539g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Peaxi162Scf00011g00030 Petunia axillaris HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Potri.014G179700 Populus trichocarpa HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Prupe.2G110700 Prunus persica HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
QL04p025124 Quercus lobata HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
RcHm_v2.0_Chr1g0340261 Rosa chinensis HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Sabra14G0137900 Salix brachista HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Sabra14G0140000 Salix brachista HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Sed0020652 Sechium edule HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Hund03282 Selenicereus undatus HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Sc23g0005150 Simmondsia chinensis HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
SGA_v2.0_scaffold110G31280 Striga asiatica HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
TWI14G0713 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
TAR629G0757 Trochodendron aralioides HOM05D000347 ORTHO05D001997 7.7e-12 73.2 37 86.5
Oeu037467.1 Olea europaea HOM05D000347 ORTHO05D001997 1.0e-11 72.8 37 86.5
Oeu039106.1 Olea europaea HOM05D000347 ORTHO05D001997 1.0e-11 72.8 37 86.5
Rhsim08G0226500 Rhododendron simsii HOM05D000347 ORTHO05D001997 1.0e-11 72.8 37 86.5
vmacro19903 Vaccinium macrocarpon HOM05D000347 ORTHO05D001997 1.0e-11 72.8 37 86.5
Aqoxy1G01573 Aquilegia oxysepala HOM05D000347 ORTHO05D001997 1.3e-11 72.4 37 83.8
BcaB01g04481 Brassica carinata HOM05D000347 ORTHO05D001997 1.3e-11 72.4 37 83.8
ECA236G1187 Erigeron canadensis HOM05D000347 ORTHO05D001997 1.3e-11 72.4 37 83.8
ECA240G3556 Erigeron canadensis HOM05D000347 ORTHO05D001997 1.3e-11 72.4 37 83.8
Gohir.A13G012000 Gossypium hirsutum HOM05D000347 ORTHO05D001997 1.3e-11 72.4 37 83.8
Gohir.D13G013100 Gossypium hirsutum HOM05D000347 ORTHO05D001997 1.3e-11 72.4 37 83.8
Gorai.013G014000 Gossypium raimondii HOM05D000347 ORTHO05D001997 1.3e-11 72.4 37 83.8
Actinidia39058 Actinidia chinensis HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
Aa31LG11G20 Aethionema arabicum HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
Ah.11g043720 Amaranthus hybridus HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
arahy.Tifrunner.gnm1.ann1.1WQ6G8 Arachis hypogaea HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
arahy.Tifrunner.gnm1.ann1.YQX6Q2 Arachis hypogaea HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
MSTRG.16536 Avicennia marina HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
EL10Ac2g03733 Beta vulgaris HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
BcaB01g04548 Brassica carinata HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
CSS0018898 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
AUR62009045 Chenopodium quinoa HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
AUR62020617 Chenopodium quinoa HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
COL.COLO4_19347 Corchorus olitorius HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
Duzib106G1861 Durio zibethinus HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
Duzib128G0635 Durio zibethinus HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
FAN10G1979 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
FAN10G2528 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
Nn5g27179 Nelumbo nucifera HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
Potri.002G216200 Populus trichocarpa HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
Sabra02G0168500 Salix brachista HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
Thecc.10G000800 Theobroma cacao HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
TWI23G0290 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
vmacro01787 Vaccinium macrocarpon HOM05D000347 ORTHO05D001997 1.7e-11 72.0 37 83.8
Eucgr.D01137 Eucalyptus grandis HOM05D000347 ORTHO05D001997 2.2e-11 71.6 37 81.1
Lj9C311G16 Lonicera japonica HOM05D000347 ORTHO05D001997 2.2e-11 71.6 37 83.8
Lalb_Chr07g0188551 Lupinus albus HOM05D000347 ORTHO05D001997 2.2e-11 71.6 37 83.8
Oeu032644.1 Olea europaea HOM05D000347 ORTHO05D001997 2.2e-11 71.6 37 83.8
Oeu064616.1 Olea europaea HOM05D000347 ORTHO05D001997 2.2e-11 71.6 37 83.8
SalBow1G5034 Salvia bowleyana HOM05D000347 ORTHO05D001997 2.2e-11 71.6 37 83.8
SalBow6G7087 Salvia bowleyana HOM05D000347 ORTHO05D001997 2.2e-11 71.6 37 83.8
Sed0020879 Sechium edule HOM05D000347 ORTHO05D001997 2.2e-11 71.6 37 83.8
THA.LOC104809915 Tarenaya hassleriana HOM05D000347 ORTHO05D001997 2.2e-11 71.6 37 83.8
TWI59G0355 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 2.2e-11 71.6 37 83.8
unitig_52.g17434 Utricularia gibba HOM05D000347 ORTHO05D001997 2.2e-11 71.6 37 83.8
CDE03G0403 Ceratophyllum demersum HOM05D000347 ORTHO05D001997 2.9e-11 71.2 37 81.1
CDE06G0438 Ceratophyllum demersum HOM05D000347 ORTHO05D001997 2.9e-11 71.2 37 81.1
Migut.N01033 Erythranthe guttata HOM05D000347 ORTHO05D001997 2.9e-11 71.2 37 83.8
HanXRQChr01g0021821 Helianthus annuus HOM05D000347 ORTHO05D001997 2.9e-11 71.2 37 81.1
HanXRQChr11g0324621 Helianthus annuus HOM05D000347 ORTHO05D001997 2.9e-11 71.2 37 81.1
Hma1.2p1_0557F.1_g178310 Hydrangea macrophylla HOM05D000347 ORTHO05D001997 2.9e-11 71.2 37 83.8
Hma1.2p1_2850F.1_g329410 Hydrangea macrophylla HOM05D000347 ORTHO05D001997 2.9e-11 71.2 37 83.8
Lsat_1_v5_gn_7_77940 Lactuca sativa HOM05D000347 ORTHO05D001997 2.9e-11 71.2 37 81.1
PSO541G1840 Papaver somniferum HOM05D000347 ORTHO05D001997 2.9e-11 71.2 37 81.1
PSO675G1679 Papaver somniferum HOM05D000347 ORTHO05D001997 2.9e-11 71.2 37 81.1
TPR.G2951 Trifolium pratense HOM05D000347 ORTHO05D001997 2.9e-11 71.2 37 81.1
PGR083G0589 Punica granatum HOM05D000347 ORTHO05D001997 3.8e-11 70.9 37 81.1
MSTRG.5240 Avicennia marina HOM05D000347 ORTHO05D001997 5.0e-11 70.5 37 83.8
DCAR_001441 Daucus carota HOM05D000347 ORTHO05D001997 5.0e-11 70.5 37 81.1
Migut.B00663 Erythranthe guttata HOM05D000347 ORTHO05D001997 5.0e-11 70.5 37 83.8
Rhsim11G0131900 Rhododendron simsii HOM05D000347 ORTHO05D001997 5.0e-11 70.5 37 83.8
Rhsim11G0132200 Rhododendron simsii HOM05D000083 ORTHO05D001732 5.0e-11 70.5 37 83.8
CSS0013040 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 6.5e-11 70.1 37 83.8
CSS0024880 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 6.5e-11 70.1 37 83.8
Dinv24259 Davidia involucrata HOM05D000347 ORTHO05D001997 6.5e-11 70.1 37 83.8
Medtr4g096880 Medicago truncatula HOM05D000347 ORTHO05D001997 6.5e-11 70.1 37 81.1
SalBow5G1135 Salvia bowleyana HOM05D000347 ORTHO05D001997 6.5e-11 70.1 37 83.8
BcaC04g19901 Brassica carinata HOM05D000347 ORTHO05D001997 8.5e-11 69.7 37 81.1
Psat1g072440 Pisum sativum HOM05D000347 ORTHO05D001641 8.5e-11 69.7 37 78.4
Psat7g089400 Pisum sativum HOM05D000347 ORTHO05D001997 8.5e-11 69.7 37 78.4
SEGI_41468 Sequoiadendron giganteum HOM05D000347 ORTHO05D001997 8.5e-11 69.7 37 78.4
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 8.5e-11 69.7 37 78.4
BcaB05g22415 Brassica carinata HOM05D000347 ORTHO05D001997 1.1e-10 69.3 37 81.1
TAR627G1203 Trochodendron aralioides HOM05D000347 ORTHO05D001997 1.1e-10 69.3 37 83.8
Ca_18258_v3 Cicer arietinum L. HOM05D000347 ORTHO05D001997 1.4e-10 68.9 37 78.4
SHI10568 Sapria himalayana HOM05D000347 ORTHO05D001997 1.4e-10 68.9 37 81.1
THA.LOC104826753 Tarenaya hassleriana HOM05D000347 ORTHO05D001997 1.4e-10 68.9 37 81.1
VMungo0251G3769 Vigna mungo HOM05D000347 ORTHO05D001997 1.4e-10 68.9 37 78.4
CSS0038621 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 1.9e-10 68.6 37 81.1
CSS0040163 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 1.9e-10 68.6 37 81.1
Glyma.05G131200 Glycine max HOM05D000347 ORTHO05D001997 1.9e-10 68.6 37 78.4
Glyma.08G085900 Glycine max HOM05D000347 ORTHO05D001997 1.9e-10 68.6 37 78.4
Lj4g0023238 Lotus japonicus HOM05D000347 ORTHO05D001997 1.9e-10 68.6 37 78.4
Phvul.002G191500 Phaseolus vulgaris HOM05D000347 ORTHO05D001997 1.9e-10 68.6 37 78.4
SGA_v2.0_scaffold145G36065 Striga asiatica HOM05D000347 ORTHO05D001997 2.5e-10 68.2 37 81.1
BcaB01g04544 Brassica carinata HOM05D000347 ORTHO05D001997 3.2e-10 67.8 37 78.4
BcaC04g19898 Brassica carinata HOM05D000347 ORTHO05D001997 3.2e-10 67.8 37 78.4
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 3.2e-10 67.8 37 78.4
BolC9t57860H Brassica oleracea HOM05D000347 ORTHO05D001997 3.2e-10 67.8 37 78.4
Oeu000196.1 Olea europaea HOM05D000347 ORTHO05D001997 3.2e-10 67.8 37 78.4
Lsat_1_v5_gn_9_118141 Lactuca sativa HOM05D000347 ORTHO05D001997 4.2e-10 67.4 37 78.4
HanXRQChr02g0058821 Helianthus annuus HOM05D000347 ORTHO05D001997 5.5e-10 67.0 37 75.7
Mapoly0101s0048 Marchantia polymorpha HOM05D000347 ORTHO05D001997 5.5e-10 67.0 37 75.7
SMO196G0209 Selaginella moellendorffii HOM05D000347 ORTHO05D001997 5.5e-10 67.0 37 75.7
ATR1098G157 Amborella trichopoda HOM05D000347 ORTHO05D001997 7.2e-10 66.6 37 75.7
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 7.2e-10 66.6 37 73.0
BraA10t43626Z Brassica rapa HOM05D000347 ORTHO05D001997 7.2e-10 66.6 37 73.0
Os03g0640100 Oryza sativa ssp. japonica HOM05D000347 ORTHO05D001997 7.2e-10 66.6 37 73.0
Zm00001eb050670 Zea mays HOM05D000347 ORTHO05D001997 7.2e-10 66.6 37 75.7
Zm00001eb050680 Zea mays HOM05D000347 ORTHO05D001997 7.2e-10 66.6 37 75.7
Pp3c22_5980 Physcomitrium patens HOM05D000347 ORTHO05D001997 9.4e-10 66.2 37 70.3
BcaC03g14110 Brassica carinata HOM05D000347 ORTHO05D001997 1.2e-09 65.9 37 78.4
C02p13490 Brassica napus HOM05D000347 ORTHO05D001997 1.2e-09 65.9 37 78.4
BolC2t07461H Brassica oleracea HOM05D000347 ORTHO05D001997 1.2e-09 65.9 37 78.4
MCO03G523 Micromonas commoda HOM05D000347 ORTHO05D001997 1.2e-09 65.9 37 73.0
CDE02G4715 Ceratophyllum demersum HOM05D000347 ORTHO05D001997 1.6e-09 65.5 37 73.0
Lj9C310G6 Lonicera japonica HOM05D000347 ORTHO05D001997 1.6e-09 65.5 37 78.4
A02p07850 Brassica napus HOM05D000347 ORTHO05D001997 4.7e-09 63.9 37 75.7
BraA02t05858Z Brassica rapa HOM05D000347 ORTHO05D001997 4.7e-09 63.9 37 75.7
CBR_g24066 Chara braunii HOM05D000347 ORTHO05D001997 4.7e-09 63.9 37 67.6
Zm00001eb218750 Zea mays HOM05D000347 ORTHO05D001997 6.1e-09 63.5 37 73.0
AagrBONN_evm.TU.Sc2ySwM_228.2157 Anthoceros agrestis HOM05D000347 ORTHO05D001997 7.9e-09 63.2 37 70.3
SEGI_10044 Sequoiadendron giganteum HOM05D000347 ORTHO05D001997 1.4e-08 62.4 37 70.3
Cre12.g523200 Chlamydomonas reinhardtii HOM05D000347 ORTHO05D001997 2.3e-08 61.6 37 70.3
Lj9A310G19 Lonicera japonica HOM05D000347 ORTHO05D001997 6.7e-08 60.1 37 73.0
Lsat_1_v5_gn_7_78061 Lactuca sativa HOM05D000347 ORTHO05D001997 2.6e-07 58.2 37 67.6
PRCOL_00006753 Prasinoderma coloniale HOM05D000347 ORTHO05D001997 2.6e-07 58.2 37 59.5
Ca_09709_v3 Cicer arietinum L. HOM05D000347 ORTHO05D001997 3.3e-07 57.8 37 62.2
Haze_26415 Corylus avellana HOM05D000347 ORTHO05D001997 1.7e-06 55.5 35 62.9
SGA_v2.0_scaffold58G20367 Striga asiatica HOM05D000347 ORTHO05D001997 3.7e-06 54.3 37 62.2
SGA_v2.0_scaffold32G13280 Striga asiatica HOM05D000347 ORTHO05D001997 4.8e-06 53.9 37 62.2


User provided reference genes

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