Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0026321 Rosa chinensis HOM05D002636 ORTHO05D018201 2.6e-26 121.3 62 100.0
RcHm_v2.0_Chr1g0383961 Rosa chinensis HOM05D002636 ORTHO05D003490 1.2e-12 75.9 57 75.4
FvH4_7g33850 Fragaria vesca HOM05D002636 ORTHO05D003490 4.7e-12 73.9 57 73.7
FAN01G0767 Fragaria x ananassa HOM05D002636 ORTHO05D003490 4.7e-12 73.9 57 73.7
FAN03G1954 Fragaria x ananassa HOM05D002636 ORTHO05D003490 4.7e-12 73.9 57 73.7
FAN10G2428 Fragaria x ananassa HOM05D002636 ORTHO05D003490 4.7e-12 73.9 57 73.7
Actinidia08741 Actinidia chinensis HOM05D002636 ORTHO05D003490 6.2e-12 73.6 57 71.9
Glyma.11G092200 Glycine max HOM05D002636 ORTHO05D003490 1.1e-11 72.8 57 71.9
Glyma.12G018500 Glycine max HOM05D002636 ORTHO05D003490 1.1e-11 72.8 57 71.9
Hma1.2p1_0758F.1_g213625 Hydrangea macrophylla HOM05D002636 ORTHO05D003490 1.1e-11 72.8 57 71.9
TWI60G0320 Tripterygium wilfordii HOM05D002636 ORTHO05D003490 1.1e-11 72.8 57 71.9
Actinidia34303 Actinidia chinensis HOM05D002636 ORTHO05D003490 1.4e-11 72.4 57 70.2
CSS0028217 Camellia sinensis var. sinensis HOM05D002636 ORTHO05D003490 1.4e-11 72.4 57 70.2
Dinv17263 Davidia involucrata HOM05D002636 ORTHO05D003490 1.4e-11 72.4 57 70.2
Psat2g188160 Pisum sativum HOM05D002636 ORTHO05D003490 1.4e-11 72.4 57 71.9
THA.LOC104802918 Tarenaya hassleriana HOM05D002636 ORTHO05D003490 1.4e-11 72.4 57 70.2
Atru.chr12.1982 Acer truncatum HOM05D002636 ORTHO05D003490 1.8e-11 72.0 57 70.2
Cfa015878 Carpinus fangiana HOM05D002636 ORTHO05D003490 1.8e-11 72.0 57 70.2
Potri.013G088600 Populus trichocarpa HOM05D002636 ORTHO05D003490 1.8e-11 72.0 57 70.2
Rhsim03G0221100 Rhododendron simsii HOM05D002636 ORTHO05D003490 1.8e-11 72.0 57 70.2
vmacro06506 Vaccinium macrocarpon HOM05D002636 ORTHO05D003490 1.8e-11 72.0 57 70.2
VMungo1127G1634 Vigna mungo HOM05D002636 ORTHO05D003490 2.3e-11 71.6 57 70.2
GSVIVG01024418001 Vitis vinifera HOM05D002636 ORTHO05D003490 2.3e-11 71.6 57 70.2
Aqoxy3G02006 Aquilegia oxysepala HOM05D002636 ORTHO05D003490 3.1e-11 71.2 57 71.9
Dinv29165 Davidia involucrata HOM05D002636 ORTHO05D003490 3.1e-11 71.2 57 68.4
LjContig00222g0023231 Lotus japonicus HOM05D002636 ORTHO05D003490 3.1e-11 71.2 57 70.2
THA.LOC104820879 Tarenaya hassleriana HOM05D002636 ORTHO05D003490 3.1e-11 71.2 57 68.4
TPR.G34280 Trifolium pratense HOM05D002636 ORTHO05D003490 3.1e-11 71.2 57 70.2
CiPaw.06G019200 Carya illinoinensis HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 68.4
Ca_04925_v3 Cicer arietinum L. HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 70.2
ClCG10G009080 Citrullus lanatus HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 70.2
COL.COLO4_33169 Corchorus olitorius HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 68.4
Haze_00612 Corylus avellana HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 68.4
MELO3C019034.2 Cucumis melo HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 70.2
CsaV3_4G009280 Cucumis sativus L. HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 70.2
Medtr4g077660 Medicago truncatula HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 70.2
Medtr5g007790 Medicago truncatula HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 70.2
Peaxi162Scf00133g00091 Petunia axillaris HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 71.9
QL09p024696 Quercus lobata HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 68.4
Hund09781 Selenicereus undatus HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 70.2
Thecc.05G212000 Theobroma cacao HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 68.4
unitig_62.g23840 Utricularia gibba HOM05D002636 ORTHO05D003490 4.0e-11 70.9 57 70.2
Ah.04g156830 Amaranthus hybridus HOM05D002636 ORTHO05D003490 5.2e-11 70.5 57 70.2
Nn3g19318 Nelumbo nucifera HOM05D002636 ORTHO05D003490 5.2e-11 70.5 57 68.4
Sc13g0010830 Simmondsia chinensis HOM05D002636 ORTHO05D003490 5.2e-11 70.5 57 70.2
Actinidia18700 Actinidia chinensis HOM05D002636 ORTHO05D003490 6.8e-11 70.1 57 68.4
MSTRG.26934 Avicennia marina HOM05D002636 ORTHO05D003490 6.8e-11 70.1 57 68.4
CSS0010103 Camellia sinensis var. sinensis HOM05D002636 ORTHO05D003490 6.8e-11 70.1 57 68.4
CiPaw.05G238800 Carya illinoinensis HOM05D002636 ORTHO05D003490 6.8e-11 70.1 57 68.4
Duzib177G0222 Durio zibethinus HOM05D002636 ORTHO05D003490 6.8e-11 70.1 57 68.4
Gohir.A02G139900 Gossypium hirsutum HOM05D002636 ORTHO05D003490 6.8e-11 70.1 57 68.4
Lj3C888T5 Lonicera japonica HOM05D002636 ORTHO05D003490 6.8e-11 70.1 57 68.4
MBI02_g22109_MAGBIO Magnolia biondii HOM05D002636 ORTHO05D003490 6.8e-11 70.1 57 68.4
MBI18_g14420_MAGBIO Magnolia biondii HOM05D002636 ORTHO05D003490 6.8e-11 70.1 57 68.4
Psat7g171680 Pisum sativum HOM05D002636 ORTHO05D003490 6.8e-11 70.1 57 70.2
SalBow2G2624 Salvia bowleyana HOM05D002636 ORTHO05D003490 6.8e-11 70.1 57 68.4
AL3G12720 Arabidopsis lyrata HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 66.7
AT3G03110 Arabidopsis thaliana HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 66.7
Ca_24448_v3 Cicer arietinum L. HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 68.4
Migut.F00101 Erythranthe guttata HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 68.4
Gorai.003G051900 Gossypium raimondii HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 68.4
Sabra13G0069300 Salix brachista HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 66.7
Sed0013375 Sechium edule HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 70.2
Solyc03g096920.3 Solanum lycopersicum HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 70.2
Sopen03g027670 Solanum pennellii HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 70.2
TPR.G37981 Trifolium pratense HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 70.2
TWI32G0353 Tripterygium wilfordii HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 68.4
TAR374G0362 Trochodendron aralioides HOM05D002636 ORTHO05D003490 8.9e-11 69.7 57 68.4
CANSAT21G2521 Cannabis sativa HOM05D002636 ORTHO05D003490 1.2e-10 69.3 57 66.7
Thhalv10019949m.g Eutrema salsugineum HOM05D002636 ORTHO05D003490 1.2e-10 69.3 57 68.4
Nn1g01959 Nelumbo nucifera HOM05D002636 ORTHO05D003490 1.2e-10 69.3 57 68.4
Phvul.002G038500 Phaseolus vulgaris HOM05D002636 ORTHO05D003490 1.2e-10 69.3 57 70.2
SEGI_37023 Sequoiadendron giganteum HOM05D002636 ORTHO05D003490 1.2e-10 69.3 57 68.4
TWI34G1095 Tripterygium wilfordii HOM05D002636 ORTHO05D003490 1.2e-10 69.3 57 70.2
TAR375G0953 Trochodendron aralioides HOM05D002636 ORTHO05D003490 1.2e-10 69.3 57 68.4
arahy.Tifrunner.gnm1.ann1.R2EA6X Arachis hypogaea HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 70.2
BcaB04g21382 Brassica carinata HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 66.7
BNapus_Darmor_BZH_scaffold_129p00010 Brassica napus HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 66.7
BolC1t05846H Brassica oleracea HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 66.7
CAN.G303.76 Capsicum annuum HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 70.2
Manes.09G124600 Manihot esculenta HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 68.4
Nitab4.5_0000021g0460 Nicotiana tabacum HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 68.4
Nitab4.5_0005081g0030 Nicotiana tabacum HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 68.4
Peaxi162Scf00745g00846 Petunia axillaris HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 70.2
Phvul.011G020900 Phaseolus vulgaris HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 68.4
Potri.019G052100 Populus trichocarpa HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 68.4
Sed0009712 Sechium edule HOM05D002636 ORTHO05D003490 1.5e-10 68.9 57 68.4
ATR0752G129 Amborella trichopoda HOM05D002636 ORTHO05D003490 2.0e-10 68.6 57 66.7
EL10Ac3g05088 Beta vulgaris HOM05D002636 ORTHO05D003490 2.0e-10 68.6 57 68.4
BraA01t04592Z Brassica rapa HOM05D002636 ORTHO05D003490 2.0e-10 68.6 57 66.7
Lj3g0010641 Lotus japonicus HOM05D002636 ORTHO05D003490 2.0e-10 68.6 57 68.4
Nitab4.5_0000011g0390 Nicotiana tabacum HOM05D002636 ORTHO05D003490 2.0e-10 68.6 56 69.6
Nitab4.5_0000921g0040 Nicotiana tabacum HOM05D002636 ORTHO05D003490 2.0e-10 68.6 56 69.6
VMungo0997G0001 Vigna mungo HOM05D002636 ORTHO05D003490 2.0e-10 68.6 57 70.2
AT5G17020 Arabidopsis thaliana HOM05D002636 ORTHO05D003490 2.6e-10 68.2 57 66.7
CARHR077130 Cardamine hirsuta HOM05D002636 ORTHO05D003490 2.6e-10 68.2 57 64.9
Gohir.A08G222600 Gossypium hirsutum HOM05D002636 ORTHO05D003490 2.6e-10 68.2 57 66.7
Gohir.D08G242900 Gossypium hirsutum HOM05D002636 ORTHO05D003490 2.6e-10 68.2 57 66.7
Gorai.004G258800 Gossypium raimondii HOM05D002636 ORTHO05D003490 2.6e-10 68.2 57 66.7
Lalb_Chr05g0211291 Lupinus albus HOM05D002636 ORTHO05D003490 2.6e-10 68.2 57 68.4
Lalb_Chr16g0376601 Lupinus albus HOM05D002636 ORTHO05D003490 2.6e-10 68.2 57 68.4
Manes.08G163100 Manihot esculenta HOM05D002636 ORTHO05D003490 2.6e-10 68.2 57 68.4
Oeu061068.1 Olea europaea HOM05D002636 ORTHO05D003490 2.6e-10 68.2 57 68.4
AL6G28020 Arabidopsis lyrata HOM05D002636 ORTHO05D003490 3.4e-10 67.8 57 66.7
CARHR196150 Cardamine hirsuta HOM05D002636 ORTHO05D003490 3.4e-10 67.8 57 66.7
Eucgr.A02966 Eucalyptus grandis HOM05D002636 ORTHO05D003490 3.4e-10 67.8 57 68.4
Glyma.01G228900 Glycine max HOM05D002636 ORTHO05D003490 3.4e-10 67.8 57 68.4
Mapoly0074s0001 Marchantia polymorpha HOM05D002636 ORTHO05D003490 3.4e-10 67.8 56 66.1
Prupe.2G324800 Prunus persica HOM05D002636 ORTHO05D003490 3.4e-10 67.8 57 66.7
Duzib128G0913 Durio zibethinus HOM05D002636 ORTHO05D003490 4.4e-10 67.4 57 64.9
PSO782G0864 Papaver somniferum HOM05D002636 ORTHO05D003490 4.4e-10 67.4 57 66.7
SGA_v2.0_scaffold44G16883 Striga asiatica HOM05D002636 ORTHO05D003490 4.4e-10 67.4 57 64.9
Glyma.11G011700 Glycine max HOM05D002636 ORTHO05D003490 5.8e-10 67.0 57 68.4
Sabra19G0056700 Salix brachista HOM05D002636 ORTHO05D003490 5.8e-10 67.0 57 66.7
BcaB01g04962 Brassica carinata HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
BcaB01g05233 Brassica carinata HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
BcaC03g18529 Brassica carinata HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
BcaNung00430 Brassica carinata HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
A02p03920 Brassica napus HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
A03p08110 Brassica napus HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
C02p08730 Brassica napus HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
C03p09380 Brassica napus HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
C03p09440 Brassica napus HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
BolC2t06787H Brassica oleracea HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
BolC3t13432H Brassica oleracea HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
BraA02t05355Z Brassica rapa HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
BraA03t10136Z Brassica rapa HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
Cpa.g.sc39.74 Carica papaya HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
Thhalv10012517m.g Eutrema salsugineum HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
Gohir.A08G222700 Gossypium hirsutum HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
SGA_v2.0_scaffold18G08506 Striga asiatica HOM05D002636 ORTHO05D003490 7.5e-10 66.6 57 64.9
Carub.0006s1522 Capsella rubella HOM05D002636 ORTHO05D003490 9.8e-10 66.2 57 64.9
AUR62005903 Chenopodium quinoa HOM05D002636 ORTHO05D003490 9.8e-10 66.2 57 66.7
AUR62028167 Chenopodium quinoa HOM05D002636 ORTHO05D003490 9.8e-10 66.2 57 66.7
Lalb_Chr01g0000981 Lupinus albus HOM05D002636 ORTHO05D003490 9.8e-10 66.2 57 64.9
Oeu028941.1 Olea europaea HOM05D002636 ORTHO05D003490 9.8e-10 66.2 57 66.7
Sc19g0000200 Simmondsia chinensis HOM05D002636 ORTHO05D003490 9.8e-10 66.2 57 64.9
BNapus_Darmor_BZH_scaffold_162p00010 Brassica napus HOM05D002636 ORTHO05D018201 1.3e-09 65.9 63 60.3
Cc02_g00350 Coffea canephora HOM05D002636 ORTHO05D003490 1.3e-09 65.9 57 66.7
Gohir.D08G243000 Gossypium hirsutum HOM05D002636 ORTHO05D003490 1.3e-09 65.9 57 64.9
Gorai.004G258900 Gossypium raimondii HOM05D002636 ORTHO05D003490 1.3e-09 65.9 57 64.9
Lalb_Chr09g0320281 Lupinus albus HOM05D002636 ORTHO05D003490 1.3e-09 65.9 57 66.7
PSO063G2721 Papaver somniferum HOM05D002636 ORTHO05D003490 1.3e-09 65.9 57 64.9
DCAR_010545 Daucus carota HOM05D002636 ORTHO05D003490 1.7e-09 65.5 57 64.9
MD07G1307000 Malus domestica HOM05D002636 ORTHO05D003490 1.7e-09 65.5 57 66.7
Os03g0858100 Oryza sativa ssp. japonica HOM05D002636 ORTHO05D003490 1.7e-09 65.5 57 66.7
Sp3g02150 Schrenkiella parvula HOM05D002636 ORTHO05D003490 1.7e-09 65.5 57 64.9
CDE04G3264 Ceratophyllum demersum HOM05D002636 ORTHO05D003490 2.2e-09 65.1 57 63.2
Aa31LG11G12580 Aethionema arabicum HOM05D002636 ORTHO05D003490 2.9e-09 64.7 56 64.3
BcaB01g04961 Brassica carinata HOM05D002636 ORTHO05D018201 2.9e-09 64.7 56 64.3
CDE06G2087 Ceratophyllum demersum HOM05D002636 ORTHO05D003490 2.9e-09 64.7 57 63.2
DCAR_020404 Daucus carota HOM05D002636 ORTHO05D003490 2.9e-09 64.7 57 64.9
MD01G1234500 Malus domestica HOM05D002636 ORTHO05D003490 2.9e-09 64.7 57 64.9
HPP92_001780 Vanilla planifolia HOM05D002636 ORTHO05D003490 2.9e-09 64.7 57 63.2
BcaC04g18836 Brassica carinata HOM05D002636 ORTHO05D003490 3.7e-09 64.3 57 63.2
Pp3c10_5440 Physcomitrium patens HOM05D002636 ORTHO05D003490 3.7e-09 64.3 56 62.5
A10p22300 Brassica napus HOM05D002636 ORTHO05D003490 6.4e-09 63.5 57 63.2
C09p60130 Brassica napus HOM05D002636 ORTHO05D003490 6.4e-09 63.5 57 63.2
BraA10t44289Z Brassica rapa HOM05D002636 ORTHO05D003490 6.4e-09 63.5 57 63.2
Migut.F00949 Erythranthe guttata HOM05D002636 ORTHO05D003490 6.4e-09 63.5 57 63.2
Zm00001eb210450 Zea mays HOM05D002636 ORTHO05D003490 6.4e-09 63.5 57 66.7
Lsat_1_v5_gn_9_47401 Lactuca sativa HOM05D002636 ORTHO05D003490 8.3e-09 63.2 53 66.0
BolC9t58847H Brassica oleracea HOM05D002636 ORTHO05D003490 1.1e-08 62.8 57 63.2
HanXRQChr03g0088411 Helianthus annuus HOM05D002636 ORTHO05D003490 1.1e-08 62.8 53 66.0
Lsat_1_v5_gn_8_3740 Lactuca sativa HOM05D002636 ORTHO05D003490 1.1e-08 62.8 54 68.5
Sp6g27120 Schrenkiella parvula HOM05D002636 ORTHO05D003490 1.1e-08 62.8 57 63.2
ECA232G3006 Erigeron canadensis HOM05D002636 ORTHO05D003490 1.4e-08 62.4 57 61.4
Zm00001eb065080 Zea mays HOM05D002636 ORTHO05D003490 1.9e-08 62.0 57 64.9
Carub.0003s0226 Capsella rubella HOM05D002636 ORTHO05D003490 2.4e-08 61.6 57 63.2
SMO236G0043 Selaginella moellendorffii HOM05D002636 ORTHO05D003490 4.1e-08 60.8 56 60.7
Pp3c1_21110 Physcomitrium patens HOM05D002636 ORTHO05D003490 5.4e-08 60.5 56 58.9
Pp3c1_21114 Physcomitrium patens HOM05D002636 ORTHO05D003490 5.4e-08 60.5 56 58.9
CBR_g23104 Chara braunii HOM05D002636 ORTHO05D003490 7.1e-08 60.1 56 60.7
HanXRQChr04g0105261 Helianthus annuus HOM05D002636 ORTHO05D003490 1.6e-07 58.9 53 60.4
ECA233G0696 Erigeron canadensis HOM05D002636 ORTHO05D003490 7.8e-07 56.6 57 56.1


User provided reference genes

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