Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 6.0e-166 587.4 291 100.0
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 4.3e-164 581.3 291 98.6
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.8e-163 578.6 291 98.3
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 5.4e-159 564.3 291 93.5
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 6.0e-158 560.8 291 93.8
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 5.6e-156 554.3 291 92.1
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 8.9e-154 547.0 291 90.4
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 2.6e-153 545.4 291 91.4
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.7e-152 542.7 272 98.5
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 6.4e-152 540.8 291 89.3
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 8.4e-152 540.4 291 90.7
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 8.4e-152 540.4 291 89.3
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.1e-151 540.0 291 90.4
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 1.1e-151 540.0 291 89.3
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.9e-151 539.3 291 89.7
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 2.4e-151 538.9 291 88.7
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 2.4e-151 538.9 291 89.7
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 2.4e-151 538.9 291 90.0
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.4e-151 538.9 272 98.2
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 4.2e-151 538.1 290 90.3
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 7.1e-151 537.3 291 90.0
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 9.2e-151 537.0 291 88.3
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.2e-150 536.6 291 89.0
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.6e-150 536.2 291 89.7
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.6e-150 536.2 291 88.7
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.7e-150 535.4 291 88.7
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 2.7e-150 535.4 291 88.7
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 2.7e-150 535.4 291 88.0
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 3.5e-150 535.0 291 89.3
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 4.6e-150 534.6 291 89.7
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 7.8e-150 533.9 291 89.3
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 1.0e-149 533.5 291 88.7
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 1.3e-149 533.1 289 88.2
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 1.3e-149 533.1 287 89.2
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 2.3e-149 532.3 291 88.3
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 2.3e-149 532.3 291 89.7
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 3.0e-149 531.9 291 88.7
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 3.9e-149 531.6 289 88.9
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 3.9e-149 531.6 291 87.3
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 5.1e-149 531.2 288 89.2
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 6.6e-149 530.8 289 90.0
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 1.1e-148 530.0 291 87.6
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.1e-148 530.0 288 88.5
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.1e-148 530.0 287 88.5
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 1.5e-148 529.6 295 89.2
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 1.9e-148 529.3 291 86.3
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 2.5e-148 528.9 291 87.6
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 2.5e-148 528.9 292 89.4
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 2.5e-148 528.9 287 89.2
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 5.6e-148 527.7 288 88.2
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 7.3e-148 527.3 291 87.6
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 7.3e-148 527.3 291 87.3
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 9.6e-148 526.9 291 87.3
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 9.6e-148 526.9 291 86.6
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 1.2e-147 526.6 312 82.7
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 2.1e-147 525.8 288 86.5
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 2.1e-147 525.8 288 86.8
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 2.1e-147 525.8 287 87.8
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 2.8e-147 525.4 289 88.2
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 2.8e-147 525.4 292 88.4
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 3.6e-147 525.0 291 88.0
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-147 524.6 298 84.6
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 4.7e-147 524.6 290 87.6
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 6.2e-147 524.2 291 86.9
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 8.1e-147 523.9 288 87.8
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 8.1e-147 523.9 291 87.6
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 1.4e-146 523.1 291 85.2
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 1.4e-146 523.1 288 87.2
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 1.8e-146 522.7 291 89.0
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 2.4e-146 522.3 290 86.2
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 2.4e-146 522.3 287 88.2
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 4.0e-146 521.5 291 88.7
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 5.2e-146 521.2 291 88.3
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 5.2e-146 521.2 291 85.9
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 6.9e-146 520.8 290 85.9
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.2e-145 520.0 289 86.9
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.2e-145 520.0 291 86.3
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.2e-145 520.0 291 86.3
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 1.2e-145 520.0 291 85.9
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 2.0e-145 519.2 296 85.5
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 2.6e-145 518.8 291 85.9
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 7.6e-145 517.3 290 87.9
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 9.9e-145 516.9 288 84.7
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 2.2e-144 515.8 273 91.9
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 2.2e-144 515.8 291 84.9
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 2.2e-144 515.8 291 84.9
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 2.9e-144 515.4 291 84.9
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 3.8e-144 515.0 291 84.9
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 4.9e-144 514.6 292 84.9
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 6.4e-144 514.2 291 83.5
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 6.4e-144 514.2 272 92.6
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 6.4e-144 514.2 291 84.9
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 8.4e-144 513.8 296 86.5
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 1.1e-143 513.5 289 85.8
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.1e-143 513.5 319 80.3
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.4e-143 513.1 288 85.1
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.4e-143 513.1 288 85.1
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 1.9e-143 512.7 291 84.9
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 3.2e-143 511.9 272 90.4
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 5.4e-143 511.1 272 92.3
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 2.1e-142 509.2 272 91.5
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 1.1e-140 503.4 275 89.5
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 5.6e-140 501.1 275 86.5
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 2.1e-139 499.2 270 88.5
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 4.8e-139 498.0 293 85.7
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 2.4e-138 495.7 287 84.3
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 2.6e-137 492.3 279 86.0
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.6e-137 492.3 363 70.5
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 7.6e-137 490.7 290 83.4
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 7.6e-137 490.7 283 84.5
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 9.9e-137 490.3 272 89.7
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 2.9e-136 488.8 285 83.5
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 4.9e-136 488.0 284 85.2
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.1e-135 486.9 273 85.3
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 2.1e-134 482.6 259 89.2
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 6.0e-134 481.1 272 87.9
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.0e-133 480.3 296 81.4
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 1.0e-133 480.3 296 81.4
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.8e-133 479.6 238 98.7
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 6.7e-133 477.6 274 85.4
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 6.7e-133 477.6 312 77.9
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 1.9e-132 476.1 258 90.7
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.9e-132 476.1 301 79.1
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 5.5e-127 458.0 256 86.3
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 9.3e-127 457.2 256 86.7
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 9.3e-127 457.2 291 77.7
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 1.2e-126 456.8 271 79.7
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 1.6e-126 456.4 247 89.9
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 2.5e-124 449.1 291 75.9
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 1.3e-123 446.8 280 75.0
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.7e-123 445.3 315 72.7
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 8.2e-123 444.1 275 84.7
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 3.1e-122 442.2 330 69.1
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 6.9e-122 441.0 242 88.0
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 4.5e-121 438.3 290 70.3
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 1.3e-120 436.8 238 87.0
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 8.4e-120 434.1 290 75.9
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 5.3e-114 414.8 394 59.9
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 5.9e-113 411.4 220 90.5
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 9.4e-111 404.1 287 67.6
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 5.1e-101 371.7 400 54.2
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 5.3e-98 361.7 275 68.4
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.2e-96 356.3 198 85.9
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 3.8e-96 355.5 191 86.4
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 6.3e-91 338.2 271 66.8
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 2.6e-89 332.8 173 91.3
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 3.3e-84 315.8 278 61.9
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 7.2e-79 298.1 254 63.0
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-76 288.9 172 77.9
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 4.0e-69 265.8 194 70.6
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 2.6e-68 263.1 261 49.4
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 7.3e-55 218.4 193 63.2
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 1.2e-52 211.1 131 80.2
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 1.2e-52 211.1 131 80.2
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 1.2e-38 164.5 141 63.1
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 9.6e-31 138.3 129 60.5
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 6.6e-24 115.5 91 63.7
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 3.3e-23 113.2 72 69.4
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 6.9e-21 105.5 66 72.7
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 2.0e-20 104.0 88 61.4
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.0e-20 104.0 88 61.4
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 9.9e-20 101.7 64 76.6
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 1.3e-14 84.7 45 88.9
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 2.1e-14 84.0 51 72.5
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 2.4e-13 80.5 46 80.4
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 9.0e-13 78.6 90 55.6
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 9.0e-13 78.6 90 55.6
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 5.1e-08 62.8 45 62.2
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.9e-07 60.8 37 81.1
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 4.8e-06 56.2 32 81.2


User provided reference genes

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