Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 0.0e+00 1942.2 982 100.0
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 0.0e+00 1700.6 969 89.4
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1697.6 967 89.1
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1688.7 986 87.8
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1626.3 1034 82.4
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 0.0e+00 1437.9 958 76.2
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1417.1 971 75.0
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1387.5 971 73.4
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 0.0e+00 1208.0 973 64.7
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 0.0e+00 1206.4 974 64.2
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 0.0e+00 1189.1 965 63.6
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1175.6 930 70.9
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 0.0e+00 1148.7 970 60.9
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 0.0e+00 1140.9 968 62.0
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 0.0e+00 1131.7 977 61.4
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 0.0e+00 1128.2 964 61.3
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 0.0e+00 1128.2 970 60.2
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 0.0e+00 1120.1 956 61.8
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 0.0e+00 1118.6 965 60.4
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 0.0e+00 1118.2 974 59.9
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 0.0e+00 1115.5 973 60.0
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 0.0e+00 1114.8 964 60.7
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 0.0e+00 1110.9 970 59.1
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 0.0e+00 1104.4 964 60.5
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 0.0e+00 1103.6 964 60.0
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 0.0e+00 1088.6 964 60.4
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 0.0e+00 1084.3 971 58.8
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 0.0e+00 1076.2 969 58.2
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 0.0e+00 1075.5 970 58.5
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.0e-310 1068.5 911 66.8
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 2.5e-309 1065.4 966 59.5
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 3.3e-309 1065.1 946 60.3
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.7e-303 1045.4 784 72.8
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 6.2e-300 1034.2 972 56.3
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 5.3e-299 1031.2 972 56.0
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 3.4e-298 1028.5 979 56.8
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 9.9e-298 1026.9 973 56.3
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.6e-295 1019.6 970 56.2
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.7e-295 1018.8 973 55.7
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.5e-295 1018.5 977 55.7
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 3.0e-294 1015.4 968 57.3
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 6.7e-294 1014.2 970 56.1
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 2.5e-293 1012.3 958 57.1
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 2.5e-293 1012.3 975 56.0
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 2.5e-293 1012.3 966 56.4
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 9.6e-293 1010.4 972 55.9
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 1.3e-292 1010.0 959 56.7
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 3.7e-292 1008.4 958 56.7
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 1.1e-291 1006.9 986 55.0
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 1.8e-291 1006.1 964 55.9
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 4.0e-291 1005.0 975 55.2
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 8.4e-289 997.3 977 55.3
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.9e-288 996.1 992 56.0
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 3.9e-286 988.4 973 55.6
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 2.5e-285 985.7 1011 53.3
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 2.4e-283 979.2 971 54.1
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 1.5e-282 976.5 991 52.6
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 7.6e-282 974.2 954 55.2
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 1.9e-277 959.5 970 54.2
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 2.2e-273 946.0 956 54.0
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.1e-272 943.7 972 53.4
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 4.2e-272 941.8 972 52.6
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 3.0e-270 935.6 967 52.3
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 1.1e-269 933.7 974 52.8
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 1.4e-267 926.8 971 53.7
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 6.7e-262 907.9 969 51.2
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 4.4e-261 905.2 967 51.7
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.5e-258 895.2 599 79.0
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 1.3e-257 893.6 962 52.4
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 6.1e-255 884.8 828 58.2
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 1.5e-253 880.2 968 50.8
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 4.8e-252 875.2 819 57.9
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.4e-251 873.6 973 51.0
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 1.4e-251 873.6 892 54.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.2e-250 870.5 880 53.6
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 3.8e-249 865.5 847 55.1
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 5.4e-243 845.1 949 50.1
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.0e-241 840.9 976 49.8
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 1.3e-241 840.5 954 47.6
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 2.9e-241 839.3 993 49.3
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 6.5e-241 838.2 969 50.4
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.4e-238 830.5 987 48.7
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 7.5e-237 824.7 990 49.1
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 1.1e-235 820.8 956 47.4
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 7.3e-232 808.1 978 46.3
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.2e-231 807.4 974 48.9
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 1.8e-230 803.5 987 47.6
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 8.9e-230 801.2 826 54.4
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-228 797.3 534 78.8
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.1e-227 794.3 999 47.3
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.4e-222 777.3 740 55.5
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 2.9e-220 769.6 998 45.9
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 4.6e-218 762.3 741 55.1
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 6.0e-218 761.9 988 45.3
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 8.6e-217 758.1 968 45.5
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 8.9e-214 748.0 969 44.8
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-213 746.9 991 45.8
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 4.9e-212 742.3 992 45.8
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 2.4e-211 740.0 996 45.5
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 1.1e-200 704.5 894 46.6
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.3e-200 702.6 569 64.0
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 2.8e-199 699.9 887 47.1
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.7e-199 699.1 569 63.6
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 1.8e-198 697.2 911 45.7
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.5e-192 677.6 659 53.9
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 3.1e-190 669.8 1056 40.0
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.7e-180 637.5 691 50.9
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 4.9e-180 636.0 680 52.1
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 1.4e-179 634.4 680 52.1
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 1.6e-175 620.9 875 43.0
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 5.5e-171 605.9 834 43.0
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 2.7e-154 550.4 685 45.3
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 6.1e-154 549.3 669 45.4
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 1.0e-153 548.5 800 41.2
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 3.0e-137 493.8 966 35.7
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 6.7e-137 492.7 743 40.9
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 1.3e-135 488.4 1050 33.9
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 1.7e-135 488.0 482 56.2
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 5.5e-131 473.0 745 39.7
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 2.9e-124 450.7 964 32.2
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.1e-123 448.7 415 61.7
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 2.8e-122 444.1 872 34.3
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 6.3e-119 433.0 844 36.5
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 3.1e-113 414.1 596 40.6
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 4.0e-113 413.7 373 57.1
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.9e-103 380.2 226 85.0
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 6.0e-101 373.2 604 38.6
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 7.8e-101 372.9 573 41.7
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 6.4e-95 353.2 257 69.6
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 5.4e-94 350.1 262 67.6
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 3.0e-92 344.4 583 37.6
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 1.2e-72 279.3 368 45.7
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-72 278.5 354 44.6
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 3.0e-68 264.6 1157 25.0
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 2.2e-55 221.9 288 42.7
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 3.8e-55 221.1 201 54.7
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 6.9e-49 200.3 146 68.5
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 1.3e-47 196.1 245 45.3
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 6.5e-47 193.7 294 38.1
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 6.7e-44 183.7 191 52.4
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 2.0e-43 182.2 306 36.3
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 2.8e-42 178.3 139 67.6
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 2.9e-39 168.3 244 42.6
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 2.2e-34 152.1 93 82.8
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 6.3e-34 150.6 434 30.4
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 1.5e-32 146.0 165 52.1
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 1.2e-29 136.3 142 54.9
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.1e-27 129.8 100 67.0
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 1.7e-26 125.9 123 53.7
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 1.3e-23 116.3 223 31.8
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 2.9e-23 115.2 84 66.7
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 4.7e-21 107.8 129 46.5
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.2e-19 103.2 84 60.7
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 6.3e-18 97.4 154 39.0
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 2.4e-17 95.5 154 38.3
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 2.2e-15 89.0 284 26.8
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 1.9e-14 85.9 120 41.7
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 2.5e-14 85.5 244 28.3
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 2.7e-13 82.0 96 49.0
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 4.0e-12 78.2 130 36.9
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 4.0e-12 78.2 115 40.9
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 2.6e-11 75.5 67 55.2
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 5.7e-11 74.3 84 50.0
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 1.3e-10 73.2 85 48.2
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 1.3e-10 73.2 85 48.2
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 1.3e-10 73.2 85 48.2
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 2.8e-10 72.0 121 38.8
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 3.7e-10 71.6 81 49.4
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 5.9e-08 64.3 80 46.2
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 5.9e-08 64.3 80 46.2
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 6.6e-07 60.8 121 34.7
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 5.5e-06 57.8 101 36.6


User provided reference genes

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