Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0008421 Rosa chinensis HOM05D003226 ORTHO05D011648 7.3e-43 176.8 87 100.0
RcHm_v2.0_Chr5g0008461 Rosa chinensis HOM05D003226 ORTHO05D035631 1.2e-26 122.9 104 64.4
CiPaw.03G026700 Carya illinoinensis HOM05D003226 ORTHO05D005723 4.0e-25 117.9 79 70.9
MBI08_g05060_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 2.6e-24 115.2 79 67.1
RcHm_v2.0_Chr6g0300801 Rosa chinensis HOM05D003226 ORTHO05D005723 4.4e-24 114.4 113 56.6
FvH4_2g39941 Fragaria vesca HOM05D003226 ORTHO05D005723 1.3e-23 112.8 113 55.8
FAN20G3149 Fragaria x ananassa HOM05D003226 ORTHO05D005723 1.3e-23 112.8 113 55.8
FAN15G3277 Fragaria x ananassa HOM05D003226 ORTHO05D005723 7.1e-22 107.1 113 54.0
MD02G1198100 Malus domestica HOM05D003226 ORTHO05D005723 7.1e-22 107.1 113 52.2
Glyma.19G022800 Glycine max HOM05D003226 ORTHO05D005723 1.2e-21 106.3 113 51.3
RcHm_v2.0_Chr7g0223741 Rosa chinensis HOM05D003226 ORTHO05D005723 2.1e-21 105.5 113 51.3
arahy.Tifrunner.gnm1.ann1.R713I2 Arachis hypogaea HOM05D003226 ORTHO05D005723 2.7e-21 105.1 113 51.3
arahy.Tifrunner.gnm1.ann1.WKF5J8 Arachis hypogaea HOM05D003226 ORTHO05D005723 2.7e-21 105.1 113 51.3
Cc07_g03380 Coffea canephora HOM05D003226 ORTHO05D005723 2.7e-21 105.1 113 51.3
FvH4_5g30910 Fragaria vesca HOM05D003226 ORTHO05D005723 2.7e-21 105.1 113 51.3
FAN18G4273 Fragaria x ananassa HOM05D003226 ORTHO05D005723 2.7e-21 105.1 113 51.3
Phvul.004G029000 Phaseolus vulgaris HOM05D003226 ORTHO05D005723 2.7e-21 105.1 113 51.3
TAR375G0513 Trochodendron aralioides HOM05D003226 ORTHO05D005723 3.5e-21 104.8 113 51.3
FAN13G2771 Fragaria x ananassa HOM05D003226 ORTHO05D005723 4.6e-21 104.4 113 51.3
CANSAT64G2675 Cannabis sativa HOM05D003226 ORTHO05D005723 6.0e-21 104.0 113 50.4
Cfa007554 Carpinus fangiana HOM05D003226 ORTHO05D005723 6.0e-21 104.0 113 50.4
Haze_14528 Corylus avellana HOM05D003226 ORTHO05D005723 6.0e-21 104.0 113 50.4
Dinv33760 Davidia involucrata HOM05D003226 ORTHO05D005723 6.0e-21 104.0 113 50.4
Lj4g0003862 Lotus japonicus HOM05D003226 ORTHO05D005723 6.0e-21 104.0 113 51.3
Manes.02G046500 Manihot esculenta HOM05D003226 ORTHO05D005723 6.0e-21 104.0 113 50.4
AUR62039793 Chenopodium quinoa HOM05D003226 ORTHO05D005723 7.8e-21 103.6 100 55.0
Psat4g106040 Pisum sativum HOM05D003226 ORTHO05D005723 7.8e-21 103.6 113 50.4
Rhsim10G0039000 Rhododendron simsii HOM05D003226 ORTHO05D005723 7.8e-21 103.6 113 51.3
SHI25915 Sapria himalayana HOM05D003226 ORTHO05D005723 7.8e-21 103.6 68 72.1
THA.LOC104805468 Tarenaya hassleriana HOM05D003226 ORTHO05D005723 7.8e-21 103.6 113 48.7
vmacro05694 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 7.8e-21 103.6 113 51.3
VMungo0464G1600 Vigna mungo HOM05D003226 ORTHO05D005723 7.8e-21 103.6 113 50.4
Aqoxy6G02361 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 1.0e-20 103.2 113 51.3
ClCG11G000030 Citrullus lanatus HOM05D003226 ORTHO05D005723 1.0e-20 103.2 113 51.3
COL.COLO4_33309 Corchorus olitorius HOM05D003226 ORTHO05D005723 1.0e-20 103.2 113 50.4
MELO3C022910.2 Cucumis melo HOM05D003226 ORTHO05D005723 1.0e-20 103.2 113 51.3
CsaV3_5G027630 Cucumis sativus L. HOM05D003226 ORTHO05D005723 1.0e-20 103.2 113 51.3
Duzib187G0629 Durio zibethinus HOM05D003226 ORTHO05D005723 1.0e-20 103.2 113 50.4
PSO017G5293 Papaver somniferum HOM05D003226 ORTHO05D005723 1.0e-20 103.2 113 49.6
PSO170G5698 Papaver somniferum HOM05D003226 ORTHO05D005723 1.0e-20 103.2 113 49.6
Sed0013037 Sechium edule HOM05D003226 ORTHO05D005723 1.0e-20 103.2 113 51.3
Thecc.04G082300 Theobroma cacao HOM05D003226 ORTHO05D005723 1.0e-20 103.2 113 50.4
Atru.chr8.162 Acer truncatum HOM05D003226 ORTHO05D005723 1.3e-20 102.8 113 50.4
Aqoxy5G00921 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 1.3e-20 102.8 113 50.4
TAR381G0539 Trochodendron aralioides HOM05D003226 ORTHO05D005723 1.3e-20 102.8 113 50.4
vmacro02215 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 1.3e-20 102.8 113 50.4
Lalb_Chr21g0318701 Lupinus albus HOM05D003226 ORTHO05D005723 1.7e-20 102.4 113 50.4
Potri.017G083200 Populus trichocarpa HOM05D003226 ORTHO05D005723 1.7e-20 102.4 113 50.4
QL02p063973 Quercus lobata HOM05D003226 ORTHO05D005723 1.7e-20 102.4 113 49.6
Sabra17G0073700 Salix brachista HOM05D003226 ORTHO05D005723 1.7e-20 102.4 113 50.4
Ah.10g031620 Amaranthus hybridus HOM05D003226 ORTHO05D005723 2.3e-20 102.1 113 49.6
CAN.G206.153 Capsicum annuum HOM05D003226 ORTHO05D005723 2.3e-20 102.1 113 50.4
Glyma.13G062800 Glycine max HOM05D003226 ORTHO05D005723 2.3e-20 102.1 113 50.4
MBI18_g02834_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D005723 2.3e-20 102.1 113 50.4
Prupe.3G267300 Prunus persica HOM05D003226 ORTHO05D005723 2.3e-20 102.1 113 50.4
BcaC06g33656 Brassica carinata HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 48.7
A06p40240 Brassica napus HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 48.7
C07p37860 Brassica napus HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 48.7
BolC7t44308H Brassica oleracea HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 48.7
BraA06t26939Z Brassica rapa HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 48.7
Carub.0005s0749 Capsella rubella HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 48.7
Thhalv10003529m.g Eutrema salsugineum HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 48.7
Gohir.A09G016100 Gossypium hirsutum HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 49.6
Gohir.D09G014800 Gossypium hirsutum HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 49.6
Gorai.006G016800 Gossypium raimondii HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 49.6
Oeu035695.1 Olea europaea HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 50.4
Sp2g17560 Schrenkiella parvula HOM05D003226 ORTHO05D005723 3.0e-20 101.7 113 48.7
CARHR037400 Cardamine hirsuta HOM05D003226 ORTHO05D005723 3.9e-20 101.3 113 48.7
Migut.H00924 Erythranthe guttata HOM05D003226 ORTHO05D005723 3.9e-20 101.3 113 50.4
SGA_v2.0_scaffold1G00329 Striga asiatica HOM05D003226 ORTHO05D005723 3.9e-20 101.3 113 50.4
SGA_v2.0_scaffold499G52482 Striga asiatica HOM05D003226 ORTHO05D005723 3.9e-20 101.3 113 50.4
GSVIVG01011408001 Vitis vinifera HOM05D003226 ORTHO05D005723 3.9e-20 101.3 113 49.6
Medtr8g072890 Medicago truncatula HOM05D003226 ORTHO05D005723 5.1e-20 100.9 113 48.7
RcHm_v2.0_Chr7g0223681 Rosa chinensis HOM05D003226 ORTHO05D011648 6.6e-20 100.5 68 69.1
AL8G21600 Arabidopsis lyrata HOM05D003226 ORTHO05D005723 8.6e-20 100.1 113 48.7
EL10Ac2g02987 Beta vulgaris HOM05D003226 ORTHO05D005723 8.6e-20 100.1 113 49.6
Hma1.2p1_0409F.1_g146951 Hydrangea macrophylla HOM05D003226 ORTHO05D005723 8.6e-20 100.1 113 51.3
Aa31LG2G4270 Aethionema arabicum HOM05D003226 ORTHO05D005723 1.1e-19 99.8 113 47.8
AUR62029891 Chenopodium quinoa HOM05D003226 ORTHO05D005723 1.1e-19 99.8 113 49.6
AUR62034416 Chenopodium quinoa HOM05D003226 ORTHO05D005723 1.1e-19 99.8 113 49.6
Ciclev10010934m.g Citrus clementina HOM05D003226 ORTHO05D005723 1.1e-19 99.8 113 48.7
Hund08915 Selenicereus undatus HOM05D003226 ORTHO05D005723 1.1e-19 99.8 113 49.6
Aqoxy293s003 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 1.5e-19 99.4 105 52.4
Peaxi162Scf00011g02911 Petunia axillaris HOM05D003226 ORTHO05D005723 1.5e-19 99.4 113 51.3
PGR004G1048 Punica granatum HOM05D003226 ORTHO05D005723 1.5e-19 99.4 113 48.7
PGSC0003DMG400001326 Solanum tuberosum HOM05D003226 ORTHO05D005723 1.5e-19 99.4 113 48.7
Aqoxy5G00799 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 1.9e-19 99.0 113 48.7
Sc14g0005870 Simmondsia chinensis HOM05D003226 ORTHO05D005723 1.9e-19 99.0 113 49.6
Actinidia06098 Actinidia chinensis HOM05D003226 ORTHO05D005723 2.5e-19 98.6 113 49.6
AT5G48600 Arabidopsis thaliana HOM05D003226 ORTHO05D005723 2.5e-19 98.6 113 47.8
Nitab4.5_0000274g0210 Nicotiana tabacum HOM05D003226 ORTHO05D005723 2.5e-19 98.6 113 50.4
Zm00001eb291710 Zea mays HOM05D003226 ORTHO05D005723 4.3e-19 97.8 113 48.7
MBI03_g21447_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 5.6e-19 97.4 61 75.4
Nn4g25634 Nelumbo nucifera HOM05D003226 ORTHO05D005723 5.6e-19 97.4 68 67.6
HPP92_015724 Vanilla planifolia HOM05D003226 ORTHO05D005723 7.3e-19 97.1 113 47.8
CSS0044326 Camellia sinensis var. sinensis HOM05D003226 ORTHO05D005723 9.5e-19 96.7 113 48.7
Eucgr.I01943 Eucalyptus grandis HOM05D003226 ORTHO05D005723 9.5e-19 96.7 113 47.8
TPR.G36529 Trifolium pratense HOM05D003226 ORTHO05D005723 9.5e-19 96.7 113 47.8
TWI34G0415 Tripterygium wilfordii HOM05D003226 ORTHO05D005723 9.5e-19 96.7 113 47.8
Ca_22432_v3 Cicer arietinum L. HOM05D003226 ORTHO05D005723 1.2e-18 96.3 106 50.9
ECA246G4217 Erigeron canadensis HOM05D003226 ORTHO05D005723 1.6e-18 95.9 113 48.7
Solyc02g087980.3 Solanum lycopersicum HOM05D003226 ORTHO05D005723 1.6e-18 95.9 113 47.8
Sopen02g032720 Solanum pennellii HOM05D003226 ORTHO05D005723 1.6e-18 95.9 113 47.8
MBI18_g21100_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 3.6e-18 94.7 70 64.3
Rhsim07G0120700 Rhododendron simsii HOM05D003226 ORTHO05D005723 4.7e-18 94.4 113 47.8
Lj7C393G0 Lonicera japonica HOM05D003226 ORTHO05D005723 6.2e-18 94.0 113 47.8
AagrBONN_evm.TU.Sc2ySwM_368.939 Anthoceros agrestis HOM05D003226 ORTHO05D005723 1.1e-17 93.2 113 46.9
MBI15_g09156_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 1.1e-17 93.2 61 72.1
Oeu062107.2 Olea europaea HOM05D003226 ORTHO05D005723 1.1e-17 93.2 68 64.7
ATR0605G313 Amborella trichopoda HOM05D003226 ORTHO05D005723 1.4e-17 92.8 113 46.9
Peaxi162Scf00129g00132 Petunia axillaris HOM05D003226 ORTHO05D005723 1.4e-17 92.8 68 63.2
HanXRQChr15g0473961 Helianthus annuus HOM05D003226 ORTHO05D005723 3.1e-17 91.7 113 46.9
MBI19_g02391_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 3.1e-17 91.7 73 60.3
CDE04G2390 Ceratophyllum demersum HOM05D003226 ORTHO05D005723 4.0e-17 91.3 113 46.0
SEGI_24334 Sequoiadendron giganteum HOM05D003226 ORTHO05D005723 4.0e-17 91.3 113 46.9
Mapoly0189s0011 Marchantia polymorpha HOM05D003226 ORTHO05D005723 5.2e-17 90.9 113 46.0
Lsat_1_v5_gn_3_101601 Lactuca sativa HOM05D003226 ORTHO05D005723 6.8e-17 90.5 113 46.9
MBI15_g46791_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 6.8e-17 90.5 72 61.1
MBI02_g35499_MAGBIO Magnolia biondii HOM05D000373 ORTHO05D011648 1.2e-16 89.7 61 72.1
Medtr7g091420 Medicago truncatula HOM05D003226 ORTHO05D005723 1.5e-16 89.4 113 46.0
Nitab4.5_0026203g0010 Nicotiana tabacum HOM05D003226 ORTHO05D005723 3.4e-16 88.2 98 52.0
CBR_g17940 Chara braunii HOM05D003226 ORTHO05D005723 7.6e-16 87.0 113 46.0
MBI08_g11766_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 2.2e-15 85.5 62 67.7
DCAR_025375 Daucus carota HOM05D003226 ORTHO05D005723 3.8e-15 84.7 113 44.2
MBI15_g03045_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 6.4e-15 84.0 62 66.1
Pp3c18_16050 Physcomitrium patens HOM05D003226 ORTHO05D005723 3.5e-13 78.2 113 39.8
MCO09G434 Micromonas commoda HOM05D003226 ORTHO05D005723 6.0e-13 77.4 113 40.7
MBI10_g28193_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 1.7e-12 75.9 53 64.2
MBI08_g18897_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 8.7e-12 73.6 52 59.6
Cre12.g493400 Chlamydomonas reinhardtii HOM05D003226 ORTHO05D005723 4.3e-11 71.2 113 38.1
MBI14_g45192_MAGBIO Magnolia biondii HOM05D001080 ORTHO05D011648 2.8e-10 68.6 47 70.2
MBI12_g22457_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 1.1e-09 66.6 47 66.0
FvH4_6g23280 Fragaria vesca HOM05D003226 ORTHO05D011648 9.0e-09 63.5 68 50.0
MBI09_g43374_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 1.2e-08 63.2 47 63.8
unitig_899.g15524 Utricularia gibba HOM05D003226 ORTHO05D005723 3.4e-08 61.6 82 42.7
MBI16_g17270_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 4.4e-08 61.2 37 70.3
MBI02_g15129_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 1.3e-07 59.7 38 68.4
MBI12_g26944_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 4.9e-07 57.8 38 71.1
MBI13_g40621_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 5.4e-06 54.3 36 61.1


User provided reference genes

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