Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0007351 Rosa chinensis HOM05D002794 ORTHO05D013792 4.0e-99 364.8 187 100.0
RcHm_v2.0_Chr5g0006931 Rosa chinensis HOM05D002794 ORTHO05D013792 5.4e-35 151.8 80 96.2
RcHm_v2.0_Chr5g0007041 Rosa chinensis HOM05D002794 ORTHO05D003763 2.5e-32 142.9 84 86.9
RcHm_v2.0_Chr5g0007191 Rosa chinensis HOM05D002794 ORTHO05D003763 2.5e-32 142.9 84 86.9
RhsimUnG0043800 Rhododendron simsii HOM05D002794 ORTHO05D003763 1.9e-19 100.1 106 57.5
Ciclev10014734m.g Citrus clementina HOM05D002794 ORTHO05D003763 3.2e-19 99.4 358 30.7
SalBow3G1823 Salvia bowleyana HOM05D002794 ORTHO05D003763 4.1e-19 99.0 207 36.7
Haze_06521 Corylus avellana HOM05D002794 ORTHO05D003763 5.4e-19 98.6 260 35.0
Prupe.4G042600 Prunus persica HOM05D002794 ORTHO05D003763 5.4e-19 98.6 362 30.9
Rhsim02G0123600 Rhododendron simsii HOM05D002794 ORTHO05D003763 5.4e-19 98.6 103 59.2
vmacro15890 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 5.4e-19 98.6 103 59.2
RcHm_v2.0_Chr5g0007761 Rosa chinensis HOM05D002794 ORTHO05D003763 9.2e-19 97.8 75 72.0
Peaxi162Scf00535g00054 Petunia axillaris HOM05D002794 ORTHO05D003763 1.2e-18 97.4 69 73.9
Peaxi162Scf00535g00058 Petunia axillaris HOM05D002794 ORTHO05D003763 1.2e-18 97.4 69 73.9
Peaxi162Scf22083g00001 Petunia axillaris HOM05D002794 ORTHO05D003763 1.2e-18 97.4 69 73.9
Atru.chr10.1951 Acer truncatum HOM05D002794 ORTHO05D003763 2.7e-18 96.3 75 72.0
SGA_v2.0_scaffold22G09776 Striga asiatica HOM05D002794 ORTHO05D003763 6.0e-18 95.1 77 68.8
Carub.0007s2870 Capsella rubella HOM05D002794 ORTHO05D003763 7.8e-18 94.7 69 72.5
Nitab4.5_0000960g0150 Nicotiana tabacum HOM05D002794 ORTHO05D003763 7.8e-18 94.7 69 73.9
Nitab4.5_0001833g0140 Nicotiana tabacum HOM05D002794 ORTHO05D003763 7.8e-18 94.7 368 30.2
Nitab4.5_0007957g0040 Nicotiana tabacum HOM05D002794 ORTHO05D003763 7.8e-18 94.7 69 73.9
TWI38G2081 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 7.8e-18 94.7 104 57.7
TWI63G1386 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 7.8e-18 94.7 104 57.7
Duzib160G0262 Durio zibethinus HOM05D002794 ORTHO05D003763 1.0e-17 94.4 76 68.4
CSS0042545 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.3e-17 94.0 342 31.3
MELO3C008690.2 Cucumis melo HOM05D002794 ORTHO05D003763 1.3e-17 94.0 104 56.7
CsaV3_2G009900 Cucumis sativus L. HOM05D002794 ORTHO05D003763 1.3e-17 94.0 104 56.7
Gorai.010G152200 Gossypium raimondii HOM05D002794 ORTHO05D003763 1.7e-17 93.6 366 30.6
Peaxi162Scf01021g00126 Petunia axillaris HOM05D002794 ORTHO05D003763 1.7e-17 93.6 357 30.0
Phvul.006G188200 Phaseolus vulgaris HOM05D002794 ORTHO05D003763 1.7e-17 93.6 96 59.4
Thecc.06G191900 Theobroma cacao HOM05D002794 ORTHO05D003763 1.7e-17 93.6 103 57.3
VMungo0540G1808 Vigna mungo HOM05D002794 ORTHO05D003763 1.7e-17 93.6 96 59.4
Gohir.D06G130400 Gossypium hirsutum HOM05D002794 ORTHO05D003763 2.3e-17 93.2 367 30.5
Manes.16G024600 Manihot esculenta HOM05D002794 ORTHO05D003763 2.3e-17 93.2 74 71.6
Potri.011G047600 Populus trichocarpa HOM05D002794 ORTHO05D003763 2.3e-17 93.2 79 64.6
Lalb_Chr09g0327551 Lupinus albus HOM05D002794 ORTHO05D003763 3.0e-17 92.8 74 71.6
Manes.17G042900 Manihot esculenta HOM05D002794 ORTHO05D003763 3.0e-17 92.8 103 57.3
Potri.004G039000 Populus trichocarpa HOM05D002794 ORTHO05D003763 3.0e-17 92.8 80 65.0
TPR.G12067 Trifolium pratense HOM05D002794 ORTHO05D003763 3.9e-17 92.4 78 67.9
EL10Ac8g20333 Beta vulgaris HOM05D002794 ORTHO05D003763 5.1e-17 92.0 106 53.8
Duzib192G0647 Durio zibethinus HOM05D002794 ORTHO05D003763 5.1e-17 92.0 104 55.8
Hma1.2p1_0191F.1_g083110 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 5.1e-17 92.0 74 70.3
Hma1.2p1_1719F.1_g299220 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 5.1e-17 92.0 74 70.3
Lj6g0005762 Lotus japonicus HOM05D002794 ORTHO05D003763 5.1e-17 92.0 76 69.7
Lalb_Chr05g0218331 Lupinus albus HOM05D002794 ORTHO05D003763 5.1e-17 92.0 76 69.7
CSS0002732 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 6.6e-17 91.7 107 55.1
Lsat_1_v5_gn_1_127401 Lactuca sativa HOM05D002794 ORTHO05D003763 6.6e-17 91.7 75 69.3
Lalb_Chr16g0383541 Lupinus albus HOM05D002794 ORTHO05D003763 6.6e-17 91.7 75 70.7
Dinv07528 Davidia involucrata HOM05D002794 ORTHO05D003763 8.6e-17 91.3 358 30.2
Medtr4g089085 Medicago truncatula HOM05D002794 ORTHO05D003763 8.6e-17 91.3 79 65.8
Oeu050833.1 Olea europaea HOM05D002794 ORTHO05D003763 8.6e-17 91.3 76 68.4
Psat6g214160 Pisum sativum HOM05D002794 ORTHO05D003763 8.6e-17 91.3 78 66.7
CAN.G1627.21 Capsicum annuum HOM05D002794 ORTHO05D003763 1.1e-16 90.9 74 68.9
Nitab4.5_0003063g0060 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.1e-16 90.9 74 68.9
Nitab4.5_0003668g0030 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.1e-16 90.9 74 68.9
Ah.09g235770 Amaranthus hybridus HOM05D002794 ORTHO05D003763 1.5e-16 90.5 320 30.9
Cpa.g.sc1117.1 Carica papaya HOM05D002794 ORTHO05D003763 1.5e-16 90.5 75 68.0
ClCG11G010460 Citrullus lanatus HOM05D002794 ORTHO05D003763 1.5e-16 90.5 104 55.8
Sabra04G0023900 Salix brachista HOM05D002794 ORTHO05D003763 1.5e-16 90.5 80 63.8
Sp7g19760 Schrenkiella parvula HOM05D002794 ORTHO05D003763 1.5e-16 90.5 106 52.8
Sed0014333 Sechium edule HOM05D002794 ORTHO05D003763 1.5e-16 90.5 105 55.2
QL05p039258 Quercus lobata HOM05D002794 ORTHO05D003763 1.9e-16 90.1 104 55.8
Sed0016399 Sechium edule HOM05D002794 ORTHO05D003763 1.9e-16 90.1 76 65.8
THA.LOC104812959 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 1.9e-16 90.1 107 53.3
AL7G32340 Arabidopsis lyrata HOM05D002794 ORTHO05D003763 2.5e-16 89.7 77 62.3
COL.COLO4_31514 Corchorus olitorius HOM05D002794 ORTHO05D003763 2.5e-16 89.7 82 63.4
GSVIVG01002655001 Vitis vinifera HOM05D002794 ORTHO05D003763 2.5e-16 89.7 103 56.3
CSS0000580 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 3.3e-16 89.4 78 65.4
CiPaw.09G055200 Carya illinoinensis HOM05D002794 ORTHO05D003763 3.3e-16 89.4 105 56.2
Ca_00324_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 3.3e-16 89.4 78 66.7
Duzib235G0583 Durio zibethinus HOM05D002794 ORTHO05D003763 3.3e-16 89.4 77 66.2
vmacro03843 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 3.3e-16 89.4 75 68.0
Aa31LG6G3640 Aethionema arabicum HOM05D002794 ORTHO05D003763 4.3e-16 89.0 107 52.3
HanXRQChr04g0097251 Helianthus annuus HOM05D002794 ORTHO05D003763 4.3e-16 89.0 78 64.1
Nn1g06626 Nelumbo nucifera HOM05D002794 ORTHO05D003763 4.3e-16 89.0 74 67.6
Solyc02g078610.4 Solanum lycopersicum HOM05D002794 ORTHO05D003763 4.3e-16 89.0 74 67.6
Solyc03g006520.3 Solanum lycopersicum HOM05D002794 ORTHO05D003763 4.3e-16 89.0 74 67.6
Sopen02g023470 Solanum pennellii HOM05D002794 ORTHO05D003763 4.3e-16 89.0 74 67.6
PGSC0003DMG400022432 Solanum tuberosum HOM05D002794 ORTHO05D003763 4.3e-16 89.0 74 67.6
Ah.14g089250 Amaranthus hybridus HOM05D002794 ORTHO05D003763 5.6e-16 88.6 107 52.3
Oeu016115.2 Olea europaea HOM05D002794 ORTHO05D003763 5.6e-16 88.6 77 66.2
Cc02_g12900 Coffea canephora HOM05D002794 ORTHO05D003763 7.3e-16 88.2 363 29.2
Thhalv10024772m.g Eutrema salsugineum HOM05D002794 ORTHO05D003763 7.3e-16 88.2 106 52.8
Psat1g205880 Pisum sativum HOM05D002794 ORTHO05D003763 7.3e-16 88.2 79 67.1
BcaNung02772 Brassica carinata HOM05D002794 ORTHO05D003763 9.5e-16 87.8 107 50.5
TAR626G0204 Trochodendron aralioides HOM05D002794 ORTHO05D003763 9.5e-16 87.8 104 53.8
Zm00001eb271720 Zea mays HOM05D002794 ORTHO05D003763 9.5e-16 87.8 83 60.2
A01p12950 Brassica napus HOM05D002794 ORTHO05D003763 1.2e-15 87.4 106 50.9
DCAR_004112 Daucus carota HOM05D002794 ORTHO05D003763 1.2e-15 87.4 74 67.6
Eucgr.D00651 Eucalyptus grandis HOM05D002794 ORTHO05D003763 1.2e-15 87.4 104 54.8
Gohir.A06G125702 Gossypium hirsutum HOM05D002794 ORTHO05D003763 1.2e-15 87.4 79 64.6
HanXRQChr16g0518241 Helianthus annuus HOM05D002794 ORTHO05D003763 1.2e-15 87.4 76 65.8
MBI18_g17022_MAGBIO Magnolia biondii HOM05D002794 ORTHO05D003763 1.2e-15 87.4 102 53.9
Hund21250 Selenicereus undatus HOM05D002794 ORTHO05D003763 1.2e-15 87.4 107 52.3
Ca_25735_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 1.6e-15 87.0 122 49.2
Migut.H01505 Erythranthe guttata HOM05D002794 ORTHO05D003763 1.6e-15 87.0 79 62.0
Lj2C286T5 Lonicera japonica HOM05D002794 ORTHO05D003763 1.6e-15 87.0 75 66.7
Hund23693 Selenicereus undatus HOM05D002794 ORTHO05D003763 1.6e-15 87.0 77 62.3
TAR624G1447 Trochodendron aralioides HOM05D002794 ORTHO05D003763 1.6e-15 87.0 103 54.4
CiPaw.10G045900 Carya illinoinensis HOM05D002794 ORTHO05D003763 2.1e-15 86.7 77 66.2
CDE08G0397 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 2.1e-15 86.7 356 28.9
Peaxi162Scf01163g00119 Petunia axillaris HOM05D002794 ORTHO05D003763 2.1e-15 86.7 76 64.5
Sopen03g002520 Solanum pennellii HOM05D002794 ORTHO05D003763 2.1e-15 86.7 74 66.2
PGSC0003DMG400026857 Solanum tuberosum HOM05D002794 ORTHO05D003763 2.1e-15 86.7 74 66.2
HPP92_014808 Vanilla planifolia HOM05D002794 ORTHO05D003763 2.1e-15 86.7 359 29.0
CANSAT35G1204 Cannabis sativa HOM05D002794 ORTHO05D003763 2.8e-15 86.3 81 60.5
Carub.0006s3292 Capsella rubella HOM05D002794 ORTHO05D003763 2.8e-15 86.3 68 66.2
CDE02G3438 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 2.8e-15 86.3 104 53.8
Glyma.13G241800 Glycine max HOM05D002794 ORTHO05D003763 2.8e-15 86.3 78 65.4
Glyma.15G071600 Glycine max HOM05D002794 ORTHO05D003763 2.8e-15 86.3 78 65.4
Nn1g04005 Nelumbo nucifera HOM05D002794 ORTHO05D003763 2.8e-15 86.3 94 55.3
ECA248G2629 Erigeron canadensis HOM05D002794 ORTHO05D003763 3.6e-15 85.9 76 64.5
Zm00001eb229010 Zea mays HOM05D002794 ORTHO05D003763 3.6e-15 85.9 79 62.0
Glyma.07G193967 Glycine max HOM05D002794 ORTHO05D003763 4.7e-15 85.5 71 70.4
THA.LOC104812811 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 4.7e-15 85.5 108 52.8
Glyma.13G182600 Glycine max HOM05D002794 ORTHO05D003763 6.2e-15 85.1 78 64.1
Os02g0827300 Oryza sativa ssp. japonica HOM05D002794 ORTHO05D003763 6.2e-15 85.1 81 59.3
PGR042G0244 Punica granatum HOM05D002794 ORTHO05D003763 6.2e-15 85.1 105 52.4
BraA01t01239Z Brassica rapa HOM05D002794 ORTHO05D003763 8.1e-15 84.7 106 50.0
Cfa004795 Carpinus fangiana HOM05D002794 ORTHO05D003763 8.1e-15 84.7 69 73.9
SEGI_11447 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 1.4e-14 84.0 358 29.1
AT4G21660 Arabidopsis thaliana HOM05D002794 ORTHO05D003763 1.8e-14 83.6 77 61.0
Medtr2g013350 Medicago truncatula HOM05D002794 ORTHO05D003763 1.8e-14 83.6 81 63.0
Aa31LG9G9480 Aethionema arabicum HOM05D002794 ORTHO05D003763 4.0e-14 82.4 107 48.6
C01p15590 Brassica napus HOM05D002794 ORTHO05D003763 4.0e-14 82.4 106 49.1
BolC1t01511H Brassica oleracea HOM05D002794 ORTHO05D003763 4.0e-14 82.4 106 49.1
Sabra11G0033000 Salix brachista HOM05D002794 ORTHO05D003763 4.0e-14 82.4 96 53.1
arahy.Tifrunner.gnm1.ann1.IR33XW Arachis hypogaea HOM05D002794 ORTHO05D003763 5.2e-14 82.0 106 52.8
arahy.Tifrunner.gnm1.ann1.XZLA7I Arachis hypogaea HOM05D002794 ORTHO05D003763 5.2e-14 82.0 106 52.8
Carub.0007s1975 Capsella rubella HOM05D002794 ORTHO05D003763 5.2e-14 82.0 77 59.7
TPR.G29054 Trifolium pratense HOM05D002794 ORTHO05D003763 5.2e-14 82.0 79 62.0
COL.COLO4_31110 Corchorus olitorius HOM05D002794 ORTHO05D003763 3.4e-13 79.3 96 55.2
SalBow1G1119 Salvia bowleyana HOM05D002794 ORTHO05D013792 3.4e-13 79.3 97 52.6
Mapoly0051s0020 Marchantia polymorpha HOM05D002794 ORTHO05D003763 4.4e-13 79.0 78 57.7
MD05G1318200 Malus domestica HOM05D002794 ORTHO05D003763 5.8e-13 78.6 105 49.5
Pp3c14_10510 Physcomitrium patens HOM05D002794 ORTHO05D003763 9.9e-13 77.8 106 46.2
MD10G1297600 Malus domestica HOM05D002794 ORTHO05D003763 2.2e-12 76.6 363 27.8
Aqoxy7G01746 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 4.9e-12 75.5 73 63.0
Lj4g0023033 Lotus japonicus HOM05D002794 ORTHO05D003763 6.4e-12 75.1 99 50.5
PSO541G2705 Papaver somniferum HOM05D002794 ORTHO05D003763 1.1e-11 74.3 107 47.7
Aqoxy5G00583 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 1.9e-11 73.6 104 50.0
Pp3c17_13490 Physcomitrium patens HOM05D002794 ORTHO05D003763 2.4e-11 73.2 78 53.8
FAN16G3580 Fragaria x ananassa HOM05D002794 ORTHO05D003763 4.1e-11 72.4 77 55.8
FAN21G3653 Fragaria x ananassa HOM05D002794 ORTHO05D003763 4.1e-11 72.4 77 55.8
FAN25G2654 Fragaria x ananassa HOM05D002794 ORTHO05D003763 4.1e-11 72.4 77 55.8
AUR62014781 Chenopodium quinoa HOM05D002794 ORTHO05D003763 5.4e-11 72.0 288 31.2
PSO675G3577 Papaver somniferum HOM05D002794 ORTHO05D003763 5.4e-11 72.0 107 44.9
Aqoxy3G03900 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 9.2e-11 71.2 104 49.0
SEGI_02703 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 9.2e-11 71.2 46 76.1
DCAR_001736 Daucus carota HOM05D002794 ORTHO05D003763 1.2e-10 70.9 327 26.6
RcHm_v2.0_Chr2g0163041 Rosa chinensis HOM05D002794 ORTHO05D003763 2.1e-10 70.1 97 50.5
Sabra11G0089300 Salix brachista HOM05D002794 ORTHO05D003763 2.1e-10 70.1 70 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3345 Anthoceros agrestis HOM05D002794 ORTHO05D003763 1.3e-09 67.4 76 53.9
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 1.7e-09 67.0 49 69.4
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 1.7e-09 67.0 49 69.4
Sabra15G0036500 Salix brachista HOM05D003694 ORTHO05D004212 1.7e-09 67.0 49 69.4
CBR_g29963 Chara braunii HOM05D002794 ORTHO05D003763 3.0e-09 66.2 74 54.1
Ciclev10006607m.g Citrus clementina HOM05D002794 ORTHO05D003763 3.0e-09 66.2 138 40.6
FvH4_3g04740 Fragaria vesca HOM05D002794 ORTHO05D003763 3.0e-09 66.2 77 54.5
FAN11G0433 Fragaria x ananassa HOM05D002794 ORTHO05D003763 3.0e-09 66.2 77 54.5
BNapus_Darmor_BZH_scaffold_273p00070 Brassica napus HOM05D002794 ORTHO05D013792 3.9e-09 65.9 57 61.4
ATR0006G055 Amborella trichopoda HOM05D002794 ORTHO05D003763 6.6e-09 65.1 136 40.4
Sabra17G0001200 Salix brachista HOM05D002794 ORTHO05D003763 8.6e-09 64.7 49 67.3
SEGI_11918 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 8.6e-09 64.7 157 39.5
ATR0618G401 Amborella trichopoda HOM05D002794 ORTHO05D003763 1.9e-08 63.5 135 40.0
C03p44500 Brassica napus HOM05D002794 ORTHO05D013792 1.9e-08 63.5 57 59.6
QL05p043868 Quercus lobata HOM05D002794 ORTHO05D337467 4.3e-08 62.4 141 37.6
A03p52850 Brassica napus HOM05D002794 ORTHO05D013792 7.3e-08 61.6 55 61.8
BcaB03g11685 Brassica carinata HOM05D002794 ORTHO05D003763 9.6e-08 61.2 156 37.2
A08p15050 Brassica napus HOM05D002794 ORTHO05D003763 9.6e-08 61.2 155 36.8
C03p83140 Brassica napus HOM05D002794 ORTHO05D003763 9.6e-08 61.2 156 36.5
BcaC01g00687 Brassica carinata HOM05D002794 ORTHO05D003763 1.6e-07 60.5 162 37.0
AUR62016968 Chenopodium quinoa HOM05D002794 ORTHO05D003763 2.1e-07 60.1 134 38.8
Dinv40533 Davidia involucrata HOM05D002794 ORTHO05D001608 2.1e-07 60.1 101 45.5
Atru.chr1.584 Acer truncatum HOM05D002794 ORTHO05D003763 2.8e-07 59.7 153 38.6
Sabra13G0109100 Salix brachista HOM05D000009 ORTHO05D000008 4.7e-07 58.9 64 51.6
Sc05g0007870 Simmondsia chinensis HOM05D002794 ORTHO05D003763 4.7e-07 58.9 134 38.1
BraA08t33486Z Brassica rapa HOM05D002794 ORTHO05D003763 1.1e-06 57.8 175 32.6
BcaC06g30670 Brassica carinata HOM05D002794 ORTHO05D003763 1.8e-06 57.0 35 74.3
BolC3t20597H Brassica oleracea HOM05D002794 ORTHO05D003763 5.2e-06 55.5 182 32.4
Lj1g0004029 Lotus japonicus HOM05D002794 ORTHO05D003763 5.2e-06 55.5 109 40.4


User provided reference genes

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