Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 5.3e-147 524.2 250 100.0
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 8.3e-132 473.8 243 91.4
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 1.4e-115 419.9 257 79.8
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 3.1e-110 402.1 253 78.3
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 9.5e-104 380.6 245 73.9
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 4.4e-101 371.7 228 76.8
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 1.7e-100 369.8 237 72.6
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.1e-99 367.1 234 74.8
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 1.4e-99 366.7 244 70.5
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 3.2e-99 365.5 241 71.0
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 5.4e-99 364.8 234 74.4
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 3.5e-98 362.1 233 72.1
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 4.6e-98 361.7 231 72.3
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 7.8e-98 360.9 228 74.1
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 1.1e-96 357.1 244 67.6
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 1.1e-96 357.1 244 70.1
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 5.6e-96 354.8 230 72.2
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 7.3e-96 354.4 238 72.7
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 9.5e-96 354.0 228 71.1
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.2e-95 353.6 238 73.1
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 1.6e-95 353.2 228 71.9
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 2.1e-95 352.8 236 71.6
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 4.7e-95 351.7 239 69.5
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 6.2e-95 351.3 243 70.4
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 1.1e-94 350.5 238 69.7
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 2.3e-94 349.4 222 72.5
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 3.1e-94 349.0 228 72.4
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 4.0e-94 348.6 251 66.1
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 1.2e-93 347.1 244 70.1
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 2.0e-93 346.3 239 68.2
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 3.8e-92 342.0 244 67.2
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 3.8e-92 342.0 239 67.8
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 3.8e-92 342.0 243 70.4
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 1.1e-91 340.5 226 70.8
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.9e-91 339.7 237 68.8
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 2.4e-91 339.3 238 68.5
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 4.1e-91 338.6 205 75.6
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 5.4e-91 338.2 220 70.0
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 1.7e-89 333.2 219 70.8
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 8.6e-89 330.9 230 67.0
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 8.6e-89 330.9 218 70.6
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 8.6e-89 330.9 226 68.6
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 1.9e-88 329.7 244 65.2
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 1.9e-88 329.7 230 68.3
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 1.9e-88 329.7 234 66.7
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 2.5e-88 329.3 242 64.5
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 2.5e-88 329.3 246 62.6
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 2.5e-88 329.3 246 62.6
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 5.6e-88 328.2 253 65.2
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 7.3e-88 327.8 218 69.3
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 9.6e-88 327.4 230 66.1
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.2e-87 327.0 225 66.7
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 1.2e-87 327.0 239 65.3
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 1.6e-87 326.6 245 64.1
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 1.6e-87 326.6 219 69.4
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 2.1e-87 326.2 216 69.0
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 2.8e-87 325.9 225 67.6
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 2.8e-87 325.9 240 64.2
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 3.6e-87 325.5 242 63.6
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 3.6e-87 325.5 245 63.7
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 8.1e-87 324.3 246 62.6
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 1.1e-86 323.9 202 72.8
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 1.2e-85 320.5 242 61.2
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 1.5e-85 320.1 234 64.1
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 2.0e-85 319.7 218 68.3
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 2.0e-85 319.7 218 68.3
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 2.0e-85 319.7 218 68.3
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 2.0e-85 319.7 218 68.3
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 2.0e-85 319.7 223 69.1
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 2.0e-85 319.7 218 67.4
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 2.0e-85 319.7 218 67.9
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 2.6e-85 319.3 242 62.0
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 3.4e-85 318.9 225 66.7
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 3.8e-84 315.5 220 69.1
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 1.4e-83 313.5 244 62.3
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 7.1e-83 311.2 225 65.3
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 6.0e-82 308.1 234 62.0
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 7.8e-82 307.8 225 64.9
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 5.1e-81 305.1 211 66.8
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 6.6e-81 304.7 235 63.0
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 6.6e-81 304.7 238 59.7
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 1.9e-80 303.1 213 67.1
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 7.3e-80 301.2 228 59.2
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 1.6e-74 283.5 201 63.2
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 2.3e-73 279.6 243 60.9
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 1.9e-72 276.6 180 69.4
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 3.3e-72 275.8 168 78.0
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 9.6e-72 274.2 218 61.5
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 3.6e-71 272.3 190 66.3
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.1e-70 270.8 167 74.3
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 3.1e-70 269.2 176 67.6
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 4.5e-69 265.4 170 75.3
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 8.7e-65 251.1 168 72.0
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 5.6e-64 248.4 172 67.4
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.4e-62 243.0 169 69.2
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 2.4e-62 243.0 180 60.0
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 7.6e-61 238.0 165 68.5
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 3.7e-55 219.2 305 39.7
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 2.7e-50 203.0 161 62.1
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 4.8e-47 192.2 225 47.1
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 4.1e-46 189.1 245 41.2
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 2.8e-39 166.4 116 69.0
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 6.5e-36 155.2 112 64.3
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 6.1e-34 148.7 143 46.9
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 3.3e-32 142.9 91 67.0
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 3.1e-30 136.3 111 67.6
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 1.6e-29 134.0 188 39.4
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 5.7e-16 89.0 197 35.0
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 4.8e-15 85.9 59 72.9
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 8.3e-15 85.1 77 50.6
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 1.1e-14 84.7 96 50.0
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 3.1e-14 83.2 144 34.0
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 5.4e-14 82.4 67 65.7
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 5.4e-14 82.4 76 56.6
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 7.7e-13 78.6 61 55.7
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 1.0e-09 68.2 51 52.9
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.4e-09 67.8 170 31.8
PRCOL_00002998 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 9.8e-08 61.6 172 29.7
PRCOL_00003886 Prasinoderma coloniale HOM05D006551 ORTHO05D044110 4.9e-07 59.3 162 27.2
Cfa024972 Carpinus fangiana HOM05D006551 ORTHO05D043702 2.4e-06 57.0 125 32.8


User provided reference genes

Program Settings