Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 1.4e-277 959.1 550 100.0
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.3e-227 792.3 555 81.3
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.3e-218 761.9 556 80.0
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 8.5e-214 747.3 557 80.3
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 6.1e-212 741.1 566 78.6
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 6.5e-105 385.6 575 50.4
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 8.8e-94 348.6 572 47.4
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 1.7e-60 238.0 442 40.5
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 5.4e-59 233.0 571 35.0
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 1.6e-58 231.5 593 36.3
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 2.3e-57 227.6 439 38.7
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 1.1e-56 225.3 467 38.1
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 4.3e-56 223.4 588 36.2
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 6.2e-55 219.5 474 35.9
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 2.3e-54 217.6 443 37.0
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 5.8e-53 213.0 447 37.8
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 7.5e-53 212.6 436 37.8
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 6.4e-52 209.5 443 37.5
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 6.4e-52 209.5 461 35.6
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 1.4e-51 208.4 440 37.0
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.4e-51 208.4 473 36.8
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 5.4e-51 206.5 439 37.4
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 9.2e-51 205.7 470 37.2
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 2.7e-50 204.1 458 33.6
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 6.0e-50 203.0 434 36.2
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 1.0e-49 202.2 448 36.2
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 1.3e-49 201.8 440 37.7
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 3.0e-49 200.7 444 33.8
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 3.0e-49 200.7 474 36.1
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 8.6e-49 199.1 541 33.1
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 1.5e-48 198.4 548 36.5
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 3.3e-48 197.2 565 35.4
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 4.3e-48 196.8 570 34.9
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 4.3e-48 196.8 330 40.6
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 5.6e-48 196.4 543 33.3
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 4.7e-47 193.4 452 39.8
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 4.7e-47 193.4 344 39.8
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 4.7e-47 193.4 446 37.2
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 6.2e-47 193.0 446 34.5
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 1.4e-46 191.8 573 36.5
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 1.8e-46 191.4 441 38.1
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 2.4e-46 191.0 465 34.0
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 5.2e-46 189.9 545 36.7
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 3.4e-45 187.2 554 34.3
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 3.4e-45 187.2 445 34.4
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 4.4e-45 186.8 531 32.8
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 4.4e-45 186.8 292 43.2
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 5.8e-45 186.4 444 33.6
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 1.3e-44 185.3 454 33.9
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 1.7e-44 184.9 557 34.5
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 2.2e-44 184.5 173 57.8
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 2.2e-44 184.5 584 33.2
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 6.4e-44 183.0 173 57.2
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 1.4e-43 181.8 433 35.3
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 1.9e-43 181.4 276 40.9
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 3.2e-43 180.6 554 34.7
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 3.2e-43 180.6 172 52.3
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 3.2e-43 180.6 159 59.1
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 5.4e-43 179.9 583 30.9
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 2.1e-42 177.9 431 34.1
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 4.6e-42 176.8 467 33.4
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 6.0e-42 176.4 442 33.7
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 6.0e-42 176.4 371 36.1
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 7.8e-42 176.0 419 33.4
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 2.3e-41 174.5 436 36.0
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 2.3e-41 174.5 173 52.0
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 2.3e-41 174.5 173 52.0
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 5.1e-41 173.3 436 36.0
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 6.6e-41 172.9 442 33.3
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 8.7e-41 172.6 428 32.2
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 1.1e-40 172.2 283 41.0
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.1e-40 172.2 291 38.1
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 1.1e-40 172.2 556 34.5
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 1.1e-40 172.2 156 53.8
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 1.9e-40 171.4 440 32.7
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 2.5e-40 171.0 440 32.3
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 5.6e-40 169.9 448 33.7
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 5.6e-40 169.9 473 31.9
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 9.6e-40 169.1 254 40.6
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 2.1e-39 167.9 335 39.1
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 2.8e-39 167.5 441 30.8
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 2.4e-38 164.5 564 31.0
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 3.1e-38 164.1 441 31.7
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 2.0e-37 161.4 445 35.1
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 2.0e-37 161.4 470 32.1
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 3.4e-37 160.6 586 29.9
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 1.3e-36 158.7 454 32.2
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 2.2e-36 157.9 432 34.3
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 2.2e-36 157.9 440 29.1
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 3.8e-36 157.1 265 37.7
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 9.3e-35 152.5 172 47.7
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 2.7e-34 151.0 431 32.9
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 2.7e-34 151.0 431 32.9
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 6.0e-34 149.8 431 31.8
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 2.3e-33 147.9 157 49.7
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 7.3e-32 142.9 244 38.1
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 1.3e-31 142.1 197 43.7
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 6.2e-31 139.8 383 32.1
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 6.2e-31 139.8 161 43.5
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 1.5e-29 135.2 366 32.8
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 3.4e-29 134.0 170 45.9
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 2.2e-28 131.3 376 31.9
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 2.1e-26 124.8 258 32.9
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.7e-26 124.4 365 30.7
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 2.7e-26 124.4 158 46.2
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 6.0e-26 123.2 219 37.9
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 5.6e-24 116.7 267 37.1
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 6.2e-23 113.2 167 35.9
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 8.1e-23 112.8 447 29.1
FAN07G0417 Fragaria x ananassa HOM05D006873 ORTHO05D008668 5.5e-19 100.1 133 62.4
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 6.9e-14 83.2 204 29.9
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 6.1e-10 70.1 64 56.2
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 8.7e-09 66.2 47 57.4
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.4e-06 58.2 93 37.6


User provided reference genes

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