Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0389361 Rosa chinensis HOM05D000001 ORTHO05D348730 3.1e-37 157.9 77 100.0
RcHm_v2.0_Chr4g0389241 Rosa chinensis HOM05D000001 ORTHO05D348895 1.2e-25 119.4 71 81.7
RcHm_v2.0_Chr4g0386911 Rosa chinensis HOM05D000001 ORTHO05D034259 2.5e-23 111.7 71 80.3
RcHm_v2.0_Chr2g0124781 Rosa chinensis HOM05D000001 ORTHO05D000003 9.0e-21 103.2 69 76.8
FAN12G0324 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.6e-20 101.7 71 71.8
FAN12G1636 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.6e-20 101.7 71 71.8
FAN22G0774 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.4e-20 101.3 71 71.8
RcHm_v2.0_Chr3g0482461 Rosa chinensis HOM05D000001 ORTHO05D034259 4.5e-20 100.9 65 78.5
FvH4_4g12100 Fragaria vesca HOM05D000001 ORTHO05D000003 7.6e-20 100.1 71 70.4
RcHm_v2.0_Chr4g0386781 Rosa chinensis HOM05D000001 ORTHO05D011532 2.7e-17 91.7 72 66.7
Rhsim02G0027300 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.3e-16 88.6 71 56.3
Prupe.1G018800 Prunus persica HOM05D000001 ORTHO05D000003 3.0e-16 88.2 71 63.4
GSVIVG01018018001 Vitis vinifera HOM05D000001 ORTHO05D000003 5.1e-16 87.4 71 60.6
Lalb_Chr16g0376441 Lupinus albus HOM05D000001 ORTHO05D000003 1.9e-15 85.5 71 54.9
Sabra10G0059300 Salix brachista HOM05D000001 ORTHO05D000003 2.5e-15 85.1 71 56.3
Ca_24411_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 4.3e-15 84.3 71 54.9
Ca_30961_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 4.3e-15 84.3 71 54.9
LjContig00408g0004438 Lotus japonicus HOM05D000001 ORTHO05D000003 4.3e-15 84.3 71 54.9
Potri.010G083700 Populus trichocarpa HOM05D000001 ORTHO05D000003 9.7e-15 83.2 71 56.3
Glyma.01G236000 Glycine max HOM05D000001 ORTHO05D000003 1.3e-14 82.8 71 53.5
TWI09G0671 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 1.6e-14 82.4 71 56.3
QL06p001562 Quercus lobata HOM05D000001 ORTHO05D000003 2.2e-14 82.0 71 57.7
Phvul.002G043500 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 4.8e-14 80.9 71 52.1
VMungo1215G1810 Vigna mungo HOM05D000001 ORTHO05D000003 4.8e-14 80.9 71 53.5
CSS0041055 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.8e-13 79.0 71 52.1
Dinv14025 Davidia involucrata HOM05D000001 ORTHO05D000003 2.4e-13 78.6 71 53.5
MELO3C006512.2 Cucumis melo HOM05D000001 ORTHO05D000003 3.1e-13 78.2 69 55.1
Glyma.11G007200 Glycine max HOM05D000001 ORTHO05D000003 3.1e-13 78.2 71 50.7
Peaxi162Scf00092g00003 Petunia axillaris HOM05D000001 ORTHO05D000003 3.1e-13 78.2 72 55.6
Cfa008462 Carpinus fangiana HOM05D000001 ORTHO05D000003 5.3e-13 77.4 71 54.9
CiPaw.01G197600 Carya illinoinensis HOM05D000001 ORTHO05D000003 5.3e-13 77.4 71 52.1
Actinidia08478 Actinidia chinensis HOM05D001769 ORTHO05D001695 6.9e-13 77.0 71 52.1
arahy.Tifrunner.gnm1.ann1.U9TVSZ Arachis hypogaea HOM05D000001 ORTHO05D000003 6.9e-13 77.0 71 53.5
CsaV3_3G013030 Cucumis sativus L. HOM05D000088 ORTHO05D000830 9.1e-13 76.6 69 53.6
Medtr5g006570 Medicago truncatula HOM05D000001 ORTHO05D000003 9.1e-13 76.6 71 52.1
PGSC0003DMG400032268 Solanum tuberosum HOM05D000001 ORTHO05D000003 1.5e-12 75.9 72 55.6
CAN.G1402.4 Capsicum annuum HOM05D000001 ORTHO05D000003 2.0e-12 75.5 72 54.2
Nitab4.5_0001547g0020 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.6e-12 75.1 72 54.2
CANSAT56G3818 Cannabis sativa HOM05D000001 ORTHO05D000003 3.4e-12 74.7 71 49.3
PGR142G2842 Punica granatum HOM05D000001 ORTHO05D000003 5.9e-12 73.9 70 50.0
TAR365G0450 Trochodendron aralioides HOM05D000001 ORTHO05D000003 5.9e-12 73.9 65 52.3
Solyc09g082450.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.7e-12 73.6 72 52.8
TPR.G37999 Trifolium pratense HOM05D000001 ORTHO05D000003 1.3e-11 72.8 71 49.3
Gohir.D10G148400 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.9e-11 71.6 71 50.7
Gorai.011G165700 Gossypium raimondii HOM05D000001 ORTHO05D000003 2.9e-11 71.6 71 50.7
Eucgr.B01053 Eucalyptus grandis HOM05D000001 ORTHO05D000003 5.0e-11 70.9 71 47.9
Sopen09g031310 Solanum pennellii HOM05D000001 ORTHO05D000003 5.0e-11 70.9 72 51.4
COL.COLO4_21527 Corchorus olitorius HOM05D000001 ORTHO05D000003 6.5e-11 70.5 71 47.9
Ciclev10004307m.g Citrus clementina HOM05D000001 ORTHO05D000003 8.5e-11 70.1 71 49.3
Duzib151G0567 Durio zibethinus HOM05D000001 ORTHO05D000003 1.1e-10 69.7 71 49.3
Gohir.A10G118300 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.4e-10 69.3 71 49.3
Rhsim02G0027600 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.5e-10 68.6 65 50.8
Sed0012658 Sechium edule HOM05D000001 ORTHO05D000003 2.5e-10 68.6 69 47.8
SalBow2G1446 Salvia bowleyana HOM05D000001 ORTHO05D000003 3.2e-10 68.2 65 50.8
Thecc.04G236000 Theobroma cacao HOM05D000001 ORTHO05D000003 3.2e-10 68.2 71 46.5
SalBow2G0389 Salvia bowleyana HOM05D000001 ORTHO05D000003 5.5e-10 67.4 65 50.8
Atru.chr4.2415 Acer truncatum HOM05D000001 ORTHO05D000003 9.4e-10 66.6 71 47.9
DCAR_030677 Daucus carota HOM05D001769 ORTHO05D000003 6.1e-09 63.9 65 47.7
Rhsim02G0027500 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.0e-08 61.6 48 56.2
Carub.0007s2249 Capsella rubella HOM05D000001 ORTHO05D000003 3.9e-08 61.2 62 43.5
Aa31LG6G1460 Aethionema arabicum HOM05D000001 ORTHO05D000003 6.7e-08 60.5 62 45.2
MSTRG.11682 Avicennia marina HOM05D000001 ORTHO05D000003 8.8e-08 60.1 65 40.0
Aa31LG9G17590 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.1e-07 59.7 71 40.8
CARHR225600 Cardamine hirsuta HOM05D000001 ORTHO05D000003 2.6e-07 58.5 62 41.9
THA.LOC104798434 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 2.6e-07 58.5 62 40.3
AT4G18750 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 3.3e-07 58.2 62 41.9
BcaC05g28027 Brassica carinata HOM05D000001 ORTHO05D000003 3.3e-07 58.2 71 42.3
A05p26010 Brassica napus HOM05D000001 ORTHO05D000003 3.3e-07 58.2 71 42.3
C05p40430 Brassica napus HOM05D000001 ORTHO05D000003 3.3e-07 58.2 71 42.3
BolC5t32784H Brassica oleracea HOM05D000001 ORTHO05D000003 3.3e-07 58.2 71 42.3
BraA05t21486Z Brassica rapa HOM05D000001 ORTHO05D000003 3.3e-07 58.2 71 42.3
SGA_v2.0_scaffold151G36697 Striga asiatica HOM05D000001 ORTHO05D000003 3.3e-07 58.2 70 47.1
Sp3g20450 Schrenkiella parvula HOM05D000001 ORTHO05D000003 5.7e-07 57.4 71 42.3
arahy.Tifrunner.gnm1.ann1.FUNI06 Arachis hypogaea HOM05D000001 ORTHO05D000003 7.4e-07 57.0 63 42.9
Sp7g17450 Schrenkiella parvula HOM05D000001 ORTHO05D000003 7.4e-07 57.0 62 40.3
AT4G25270 Arabidopsis thaliana HOM05D000001 ORTHO05D009335 1.3e-06 56.2 65 40.0
Zm00001eb424590 Zea mays HOM05D000001 ORTHO05D000003 1.3e-06 56.2 75 37.3
AT3G22690 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 1.7e-06 55.8 71 43.7
BcaB06g26380 Brassica carinata HOM05D000001 ORTHO05D000003 1.7e-06 55.8 71 42.3
CARHR098570 Cardamine hirsuta HOM05D000001 ORTHO05D000003 1.7e-06 55.8 71 39.4
DCAR_021244 Daucus carota HOM05D000001 ORTHO05D000003 2.2e-06 55.5 69 39.1
Sc09g0000620 Simmondsia chinensis HOM05D000001 ORTHO05D000003 2.2e-06 55.5 63 38.1
AL7G35500 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 2.8e-06 55.1 62 40.3
arahy.Tifrunner.gnm1.ann1.5RRQ1I Arachis hypogaea HOM05D000001 ORTHO05D000003 2.8e-06 55.1 63 41.3
Potri.004G047800 Populus trichocarpa HOM05D000001 ORTHO05D000003 2.8e-06 55.1 74 37.8
QL09p019182 Quercus lobata HOM05D000001 ORTHO05D009335 2.8e-06 55.1 64 39.1
CARHR232680 Cardamine hirsuta HOM05D000001 ORTHO05D009335 3.7e-06 54.7 65 38.5
FAN04G2025 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.7e-06 54.7 69 44.9
Peaxi162Scf00184g00034 Petunia axillaris HOM05D000001 ORTHO05D009502 3.7e-06 54.7 64 35.9
BcaC09g51472 Brassica carinata HOM05D000001 ORTHO05D000003 4.8e-06 54.3 63 41.3
BcaNung05917 Brassica carinata HOM05D000001 ORTHO05D000003 4.8e-06 54.3 63 41.3
A01p10770 Brassica napus HOM05D000001 ORTHO05D000003 4.8e-06 54.3 63 41.3
C01p12730 Brassica napus HOM05D000001 ORTHO05D000003 4.8e-06 54.3 63 41.3
BolC1t01250H Brassica oleracea HOM05D000001 ORTHO05D000003 4.8e-06 54.3 63 41.3
BraA01t01023Z Brassica rapa HOM05D000001 ORTHO05D000003 4.8e-06 54.3 63 41.3
MELO3C011735.2 Cucumis melo HOM05D000001 ORTHO05D000003 4.8e-06 54.3 62 43.5
Dinv40595 Davidia involucrata HOM05D000001 ORTHO05D000003 4.8e-06 54.3 65 40.0
FvH4_6g47350 Fragaria vesca HOM05D000001 ORTHO05D000003 4.8e-06 54.3 66 34.8
Gohir.A07G124700 Gossypium hirsutum HOM05D000001 ORTHO05D000003 4.8e-06 54.3 62 46.8
Ah.09g228770 Amaranthus hybridus HOM05D000001 ORTHO05D000003 6.3e-06 53.9 74 35.1
Thhalv10020066m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 6.3e-06 53.9 71 39.4
Thhalv10024377m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 6.3e-06 53.9 62 38.7
AL7G27870 Arabidopsis lyrata HOM05D000001 ORTHO05D009335 8.2e-06 53.5 65 38.5
Cfa008213 Carpinus fangiana HOM05D000001 ORTHO05D009335 8.2e-06 53.5 64 35.9
FvH4_5g05260 Fragaria vesca HOM05D000001 ORTHO05D000003 8.2e-06 53.5 69 43.5
FAN13G2527 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.2e-06 53.5 69 43.5
FAN18G4108 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.2e-06 53.5 69 43.5
FAN18G4583 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.2e-06 53.5 69 43.5
Peaxi162Scf00377g00094 Petunia axillaris HOM05D000001 ORTHO05D010033 8.2e-06 53.5 64 35.9
Sc17g0005990 Simmondsia chinensis HOM05D000001 ORTHO05D000003 8.2e-06 53.5 74 40.5
TWI56G1321 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 8.2e-06 53.5 60 43.3


User provided reference genes

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