Gene: Sopen09g031310

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g031310
  • Transcript Identifier Sopen09g031310.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 79711564-79714077 : negative

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g031310.1

Descriptions

  • Description INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification | LOCATED IN: chloroplast | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein ., Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G22690
GO:0010207
ISO
PLAZA Integrative Orthologyphotosystem II assembly AT3G22690
GO:0048564
ISO
PLAZA Integrative Orthologyphotosystem I assembly AT3G22690
GO:0009451
ISO
PLAZA Integrative OrthologyRNA modification AT3G22690
GO:0010380
ISO
PLAZA Integrative Orthologyregulation of chlorophyll biosynthetic process AT3G22690
GO:0009644
ISO
PLAZA Integrative Orthologyresponse to high light intensity AT3G22690
GO:0010027
ISO
PLAZA Integrative Orthologythylakoid membrane organization AT3G22690

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0008270
IEA
InterProzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G22690

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR032867 DYW domain
Mapman id Description
16.11.3.3.4.40 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (YS1)