Gene: Carub.0007s2249

General Information

Structural Information

Species Capsella rubella
Gene Identifier Carub.0007s2249
Transcript Identifier Carub.0007s2249.1
Gene Type Coding gene
Location scaffold_7 : 8504318-8506936 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000001
#Genes/#Species 35287/100
Phylogenetic origin

ID ORTHO05D000003
#Genes/#Species 15137/100
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

id Carub.0007s2249.v1.1
pacid 39234225
synonym Carubv10004110m.g

Descriptions

Short descriptions
Ortholog descriptions

Description PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010087	ISO	PLAZA Integrative Orthology	phloem or xylem histogenesis	AT4G18750
GO:0048366	ISO	PLAZA Integrative Orthology	leaf development	AT4G18750
GO:0010588	ISO	PLAZA Integrative Orthology	cotyledon vascular tissue pattern formation	AT4G18750
GO:0010305	ISO	PLAZA Integrative Orthology	leaf vascular tissue pattern formation	AT4G18750
GO:1900865	ISO	PLAZA Integrative Orthology	chloroplast RNA modification	AT4G18750

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	InterPro	zinc ion binding
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT4G18750

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat
IPR032867	DYW domain
IPR011990	Tetratricopeptide-like helical domain superfamily

Mapman id	Description
16.11.3.3.4.59	RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (DOT4)