Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 2.5e-81 305.4 158 100.0
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 8.7e-79 297.0 155 98.1
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 8.8e-63 243.8 145 85.5
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.3e-61 240.0 145 84.8
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 2.2e-58 229.2 145 80.7
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.6e-48 195.3 134 77.6
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 7.5e-46 187.6 145 70.3
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 3.3e-33 145.6 165 54.5
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 4.4e-30 135.2 158 49.4
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.7e-29 133.3 164 50.6
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.8e-28 129.8 140 54.3
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 4.1e-28 128.6 143 49.7
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 9.2e-28 127.5 167 46.7
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.2e-27 127.1 164 48.2
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 7.8e-27 124.4 147 48.3
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.0e-26 124.0 143 47.6
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 3.9e-26 122.1 129 50.4
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 5.0e-26 121.7 144 48.6
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 5.0e-26 121.7 167 46.1
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 5.0e-26 121.7 138 52.2
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 6.6e-26 121.3 121 52.9
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 1.1e-25 120.6 166 45.2
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.5e-25 120.2 129 48.8
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.5e-25 120.2 158 43.0
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.5e-25 119.4 168 44.0
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.5e-25 119.4 148 45.3
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 3.3e-25 119.0 142 47.2
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.3e-25 119.0 135 47.4
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.3e-25 119.0 143 48.3
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 3.3e-25 119.0 166 45.2
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 7.3e-25 117.9 130 50.8
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 9.5e-25 117.5 147 44.9
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 9.5e-25 117.5 149 46.3
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 9.5e-25 117.5 163 46.0
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.6e-24 116.7 159 42.8
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.6e-24 116.7 144 47.2
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.6e-24 116.7 147 46.9
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.6e-24 116.7 166 45.8
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 2.1e-24 116.3 146 45.9
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.8e-24 115.9 128 50.8
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 2.8e-24 115.9 146 43.8
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 2.8e-24 115.9 144 44.4
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 4.7e-24 115.2 124 49.2
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 6.2e-24 114.8 171 40.4
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.0e-23 114.0 166 42.2
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.0e-23 114.0 117 51.3
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 2.3e-23 112.8 165 41.8
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 2.3e-23 112.8 132 47.7
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 2.3e-23 112.8 155 41.3
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 2.3e-23 112.8 165 41.2
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 5.2e-23 111.7 147 44.9
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 5.2e-23 111.7 92 58.7
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 6.8e-23 111.3 139 46.0
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 6.8e-23 111.3 148 45.9
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 6.8e-23 111.3 148 43.2
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-22 110.5 156 44.2
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 2.6e-22 109.4 116 49.1
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.6e-22 109.4 121 45.5
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.4e-22 109.0 121 45.5
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 4.4e-22 108.6 134 47.0
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 4.4e-22 108.6 159 39.0
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 4.4e-22 108.6 132 47.0
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 5.8e-22 108.2 134 46.3
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 5.8e-22 108.2 120 46.7
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 9.8e-22 107.5 141 48.2
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 9.8e-22 107.5 137 47.4
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.3e-21 107.1 150 43.3
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.3e-21 107.1 149 42.3
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.7e-21 106.7 165 43.0
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.7e-21 106.7 148 42.6
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.9e-21 105.9 130 46.2
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 2.9e-21 105.9 143 46.9
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.9e-21 105.9 120 51.7
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 2.9e-21 105.9 136 44.9
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 3.7e-21 105.5 119 47.1
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 4.9e-21 105.1 141 44.7
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 4.9e-21 105.1 141 44.7
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 6.4e-21 104.8 135 46.7
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 6.4e-21 104.8 142 46.5
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 6.4e-21 104.8 142 46.5
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 6.4e-21 104.8 128 45.3
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 6.4e-21 104.8 121 50.4
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 8.3e-21 104.4 92 57.6
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 8.3e-21 104.4 151 41.1
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 8.3e-21 104.4 151 43.0
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 8.3e-21 104.4 94 51.1
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 8.3e-21 104.4 117 46.2
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.1e-20 104.0 135 45.9
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.1e-20 104.0 165 40.0
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.4e-20 103.6 134 46.3
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.9e-20 103.2 146 43.2
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 2.4e-20 102.8 150 43.3
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 3.2e-20 102.4 117 45.3
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 3.2e-20 102.4 126 43.7
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 3.2e-20 102.4 134 45.5
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 5.4e-20 101.7 120 45.0
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 5.4e-20 101.7 145 44.1
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 5.4e-20 101.7 90 57.8
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.6e-19 100.1 154 40.9
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 2.0e-19 99.8 133 42.1
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 2.7e-19 99.4 94 48.9
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 4.6e-19 98.6 138 42.0
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 7.8e-19 97.8 172 37.2
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.0e-18 97.4 128 42.2
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.7e-18 96.7 134 36.6
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 3.0e-18 95.9 136 41.2
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 3.0e-18 95.9 136 41.2
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 3.0e-18 95.9 134 37.3
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 3.0e-18 95.9 136 41.2
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 3.0e-18 95.9 134 37.3
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 3.9e-18 95.5 143 42.7
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 8.6e-18 94.4 159 40.9
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.1e-17 94.0 137 37.2
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.1e-17 94.0 121 41.3
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 4.3e-17 92.0 139 36.7
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 4.3e-17 92.0 164 36.0
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 5.6e-17 91.7 87 49.4
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 7.3e-17 91.3 138 35.5
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.3e-17 91.3 87 49.4
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 7.3e-17 91.3 126 41.3
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 7.3e-17 91.3 157 36.3
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 7.3e-17 91.3 157 36.3
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.6e-16 90.1 134 38.8
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 2.1e-16 89.7 106 44.3
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 2.1e-16 89.7 105 42.9
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 3.6e-16 89.0 130 43.8
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 3.6e-16 89.0 142 37.3
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 6.2e-16 88.2 162 33.3
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.1e-15 87.4 134 37.3
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 8.9e-15 84.3 128 39.8
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.0e-14 83.2 135 41.5
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 3.4e-14 82.4 119 41.2
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 5.8e-14 81.6 82 43.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 5.8e-14 81.6 164 33.5
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.3e-13 80.5 120 39.2
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.3e-13 80.5 75 49.3
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 2.2e-13 79.7 94 43.6
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.9e-13 79.3 66 57.6
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 4.9e-13 78.6 150 37.3
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 6.4e-13 78.2 126 37.3
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 9.2e-12 74.3 155 34.2
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.7e-11 72.8 106 41.5
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 3.5e-11 72.4 86 47.7
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 6.6e-10 68.2 92 38.0
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.6e-08 63.5 90 40.0
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 2.8e-08 62.8 69 46.4
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.6e-08 62.4 65 49.2
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 1.1e-07 60.8 96 37.5
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 2.3e-07 59.7 46 60.9
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 3.1e-07 59.3 107 38.3


User provided reference genes

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