Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 1.4e-226 789.3 397 100.0
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 5.9e-217 757.3 401 95.5
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 7.8e-217 756.9 402 95.3
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.3e-216 755.4 401 95.3
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 2.9e-216 755.0 402 95.0
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 8.6e-216 753.4 401 95.0
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 3.6e-206 721.5 395 92.7
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 3.7e-203 711.4 405 90.1
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 1.7e-200 702.6 407 87.2
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 3.9e-200 701.4 405 87.7
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 8.6e-200 700.3 406 87.2
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 8.6e-200 700.3 399 88.7
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.9e-199 699.1 407 88.2
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 1.9e-199 699.1 404 88.4
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 2.5e-199 698.7 408 88.7
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 4.3e-199 698.0 404 87.1
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 4.3e-199 698.0 405 88.1
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 7.3e-199 697.2 403 87.6
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 9.5e-199 696.8 405 87.7
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 9.5e-199 696.8 404 86.9
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 1.6e-198 696.0 403 87.3
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.1e-198 695.7 407 87.7
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 2.8e-198 695.3 408 85.8
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 3.6e-198 694.9 404 86.6
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 4.7e-198 694.5 410 86.6
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 8.1e-198 693.7 406 88.2
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.1e-197 693.3 401 87.0
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.0e-197 691.4 401 86.8
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 5.2e-197 691.0 401 86.5
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 5.2e-197 691.0 402 86.8
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 6.8e-197 690.6 407 85.7
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 1.2e-196 689.9 404 86.9
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 1.5e-196 689.5 402 86.6
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.5e-196 689.5 397 87.4
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 3.4e-196 688.3 413 83.5
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 3.4e-196 688.3 419 83.5
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 3.4e-196 688.3 407 85.5
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 3.4e-196 688.3 403 85.9
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 5.8e-196 687.6 402 86.3
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 7.5e-196 687.2 398 86.4
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 1.3e-195 686.4 403 85.4
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.7e-195 686.0 405 87.2
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 1.7e-195 686.0 405 86.4
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 1.7e-195 686.0 404 85.6
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 2.9e-195 685.3 403 87.1
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 2.9e-195 685.3 406 85.7
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 2.9e-195 685.3 402 85.8
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 6.4e-195 684.1 357 93.6
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 8.3e-195 683.7 357 94.1
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 8.3e-195 683.7 398 85.9
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.1e-194 683.3 403 84.6
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 1.1e-194 683.3 407 85.3
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.9e-194 682.6 357 94.1
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 4.1e-194 681.4 405 85.4
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 4.1e-194 681.4 405 85.4
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 5.4e-194 681.0 407 84.8
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.2e-193 679.9 405 85.2
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 2.1e-193 679.1 399 84.5
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.7e-193 678.7 399 86.7
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 4.6e-193 677.9 405 85.2
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 4.6e-193 677.9 405 83.7
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.3e-192 676.4 406 83.7
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.7e-192 676.0 401 85.5
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.7e-192 676.0 401 85.5
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 2.3e-192 675.6 416 83.2
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 3.0e-192 675.2 409 83.9
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 3.9e-192 674.9 406 84.0
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 3.9e-192 674.9 404 84.7
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 6.6e-192 674.1 407 83.8
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 1.1e-191 673.3 409 83.1
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 1.1e-191 673.3 409 83.1
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.5e-191 672.9 406 83.3
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 1.9e-191 672.5 406 83.7
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 1.9e-191 672.5 409 83.4
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 2.5e-191 672.2 409 83.4
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 3.3e-191 671.8 407 82.8
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 4.3e-191 671.4 409 82.9
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 4.3e-191 671.4 411 83.9
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 4.3e-191 671.4 403 83.1
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 5.6e-191 671.0 409 82.9
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 5.6e-191 671.0 417 82.5
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 9.5e-191 670.2 409 83.1
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 9.5e-191 670.2 374 89.0
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 1.2e-190 669.8 402 84.6
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 1.6e-190 669.5 406 84.7
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 2.1e-190 669.1 361 90.9
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 3.6e-190 668.3 409 83.1
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 4.7e-190 667.9 409 82.6
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 4.7e-190 667.9 409 82.6
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 6.2e-190 667.5 409 82.4
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 6.2e-190 667.5 382 87.4
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 8.1e-190 667.2 359 91.1
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.4e-189 666.4 409 82.4
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.8e-189 666.0 409 82.2
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 3.1e-189 665.2 419 81.9
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 5.2e-189 664.5 371 88.1
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 8.9e-189 663.7 401 82.8
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 2.0e-188 662.5 407 82.6
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 2.6e-188 662.1 406 82.5
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 3.4e-188 661.8 425 81.2
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 3.4e-188 661.8 401 83.3
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 9.9e-188 660.2 357 89.4
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 1.3e-187 659.8 396 84.1
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 4.2e-186 654.8 413 81.1
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.6e-185 652.9 405 82.2
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 6.0e-185 651.0 404 80.7
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 3.2e-178 628.6 333 91.3
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 4.3e-175 618.2 357 82.9
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 4.3e-175 618.2 353 84.4
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.4e-173 613.2 366 81.1
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 1.4e-173 613.2 368 83.2
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.9e-171 605.5 397 75.3
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 4.6e-169 598.2 404 77.5
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.1e-168 594.7 401 77.1
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 5.6e-159 564.7 397 74.1
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 6.9e-157 557.8 334 82.9
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 1.5e-151 540.0 320 85.6
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 5.7e-151 538.1 335 82.4
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 1.1e-149 533.9 312 86.2
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 9.0e-149 530.8 357 71.4
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.3e-143 512.3 357 68.3
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 3.1e-141 505.8 265 90.2
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 3.4e-140 502.3 406 67.5
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 6.5e-139 498.0 311 81.0
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.4e-138 496.9 349 69.6
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.1e-133 480.7 405 62.5
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 5.3e-133 478.4 299 83.3
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 7.2e-130 468.0 248 91.5
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 9.4e-130 467.6 350 65.4
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.6e-129 466.8 287 83.3
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 8.0e-121 438.0 305 73.8
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.0e-112 409.5 276 75.4
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 5.9e-100 368.6 256 71.5
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 7.5e-95 351.7 316 61.7
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 6.6e-59 232.3 132 84.8
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 8.7e-59 231.9 132 84.1
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 7.9e-52 208.8 373 37.3
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.8e-49 200.3 118 82.2
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.7e-49 199.9 118 81.4
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 5.1e-43 179.5 104 84.6
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.5e-42 177.2 103 84.5
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.5e-42 177.2 103 84.5
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 9.3e-37 158.7 106 75.5
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.2e-36 158.3 94 81.9
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 9.7e-34 148.7 94 77.7
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 3.0e-27 127.1 105 66.7
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 5.7e-26 122.9 129 55.0
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 2.2e-25 120.9 99 66.7
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.4e-24 117.5 71 74.6
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 2.2e-22 110.9 62 91.9
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 5.0e-22 109.8 59 86.4
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.2e-20 105.1 81 67.9
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 2.3e-19 100.9 47 91.5
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 2.0e-18 97.8 59 81.4
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.2e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.0e-11 73.9 39 89.7
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 4.5e-07 60.1 71 56.3
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 1.3e-06 58.5 53 58.5


User provided reference genes

Program Settings