Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 2.8e-48 194.9 96 100.0
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.1e-44 183.0 96 93.8
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 5.5e-44 180.6 96 92.7
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 5.5e-44 180.6 96 92.7
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 7.2e-44 180.3 96 92.7
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 1.2e-43 179.5 96 92.7
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 4.4e-41 171.0 92 89.1
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 7.5e-41 170.2 123 74.0
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 7.5e-41 170.2 96 86.5
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 9.8e-41 169.9 95 86.3
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 9.8e-41 169.9 94 87.2
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 2.8e-40 168.3 93 86.0
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 6.3e-40 167.2 93 84.9
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 6.3e-40 167.2 96 84.4
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 6.3e-40 167.2 93 87.1
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.8e-39 165.6 95 82.1
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 2.4e-39 165.2 87 88.5
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 2.4e-39 165.2 93 84.9
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 3.2e-39 164.9 92 87.0
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 3.2e-39 164.9 94 81.9
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 4.1e-39 164.5 91 86.8
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 4.1e-39 164.5 94 85.1
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 5.4e-39 164.1 96 82.3
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 5.4e-39 164.1 93 84.9
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 7.0e-39 163.7 96 82.3
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 7.0e-39 163.7 87 89.7
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 7.0e-39 163.7 92 85.9
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 7.0e-39 163.7 92 85.9
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 9.2e-39 163.3 92 85.9
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 9.2e-39 163.3 92 84.8
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 9.2e-39 163.3 91 85.7
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.2e-38 162.9 93 83.9
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 1.2e-38 162.9 94 83.0
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 1.6e-38 162.5 93 83.9
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 2.0e-38 162.2 89 86.5
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 2.0e-38 162.2 94 80.9
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 2.0e-38 162.2 83 90.4
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 2.0e-38 162.2 87 87.4
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 2.0e-38 162.2 87 87.4
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.0e-38 162.2 94 83.0
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 2.7e-38 161.8 89 85.4
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 3.5e-38 161.4 93 82.8
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 3.5e-38 161.4 93 82.8
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 4.5e-38 161.0 87 87.4
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 4.5e-38 161.0 94 80.9
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 5.9e-38 160.6 87 88.5
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 5.9e-38 160.6 87 88.5
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 5.9e-38 160.6 92 84.8
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 7.8e-38 160.2 93 82.8
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 1.0e-37 159.8 92 83.7
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.3e-37 159.5 93 81.7
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.7e-37 159.1 94 84.0
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.7e-37 159.1 86 87.2
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 1.7e-37 159.1 84 89.3
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 2.3e-37 158.7 92 81.5
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 2.3e-37 158.7 92 81.5
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 2.3e-37 158.7 93 82.8
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 8.6e-37 156.8 93 81.7
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 8.6e-37 156.8 93 81.7
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.5e-36 156.0 88 84.1
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.5e-36 156.0 93 81.7
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 1.9e-36 155.6 96 78.1
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.9e-36 155.6 93 81.7
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 1.9e-36 155.6 88 84.1
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 2.5e-36 155.2 91 82.4
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 3.3e-36 154.8 93 79.6
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 3.3e-36 154.8 96 78.1
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 5.6e-36 154.1 95 75.8
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 5.6e-36 154.1 93 79.6
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 7.3e-36 153.7 96 77.1
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.2e-35 152.9 93 78.5
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 2.8e-35 151.8 93 78.5
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 2.8e-35 151.8 93 78.5
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 3.6e-35 151.4 93 77.4
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 3.6e-35 151.4 91 79.1
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 4.7e-35 151.0 84 86.9
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 4.7e-35 151.0 84 86.9
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 4.7e-35 151.0 84 86.9
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 4.7e-35 151.0 96 74.0
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 6.1e-35 150.6 93 81.7
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 8.0e-35 150.2 104 74.0
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 1.4e-34 149.4 96 74.0
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.4e-34 149.4 96 72.9
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.4e-34 149.4 96 72.9
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.8e-34 149.1 96 78.1
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.8e-34 149.1 96 78.1
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 1.8e-34 149.1 88 79.5
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 4.0e-34 147.9 84 85.7
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 6.8e-34 147.1 84 84.5
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 8.9e-34 146.7 96 72.9
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 3.4e-33 144.8 92 72.8
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 4.4e-33 144.4 93 72.0
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 5.8e-33 144.1 89 76.4
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 9.8e-33 143.3 86 75.6
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 1.3e-32 142.9 91 72.5
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 2.2e-32 142.1 85 81.2
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 4.9e-32 141.0 96 69.8
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 1.0e-29 133.3 76 82.9
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.7e-29 132.5 100 72.0
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 8.6e-29 130.2 64 93.8
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 1.1e-28 129.8 81 74.1
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 3.3e-28 128.3 71 84.5
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 1.2e-27 126.3 75 82.7
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 4.7e-27 124.4 72 83.3
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 8.0e-27 123.6 77 80.5
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 1.8e-26 122.5 72 83.3
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 4.0e-26 121.3 83 72.3
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 8.9e-26 120.2 67 86.6
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 4.4e-25 117.9 72 79.2
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.2e-24 115.5 87 66.7
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.2e-24 115.5 87 66.7
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 2.9e-24 115.2 73 75.3
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 4.9e-24 114.4 73 72.6
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 1.1e-23 113.2 67 77.6
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.4e-23 112.1 74 74.3
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 2.1e-22 109.0 66 77.3
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.7e-22 108.6 93 60.2
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 7.8e-22 107.1 73 68.5
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 3.6e-19 98.2 83 54.2
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 1.4e-18 96.3 85 50.6
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 2.3e-18 95.5 90 56.7
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 2.0e-17 92.4 45 91.1
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.3e-13 79.7 60 68.3
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 1.3e-13 79.7 86 45.3
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 8.6e-13 77.0 52 73.1
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 9.6e-12 73.6 40 87.5
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 9.6e-12 73.6 43 81.4
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 2.8e-11 72.0 54 63.0
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.6e-06 54.7 39 71.8


User provided reference genes

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