Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 2.1e-42 175.3 85 100.0
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 1.8e-25 119.0 63 92.1
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 3.9e-25 117.9 62 91.9
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.9e-25 117.9 62 91.9
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.9e-25 117.9 62 91.9
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 3.9e-25 117.9 62 91.9
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.5e-24 115.2 62 90.3
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 4.3e-24 114.4 62 87.1
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 1.3e-23 112.8 62 83.9
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 1.3e-23 112.8 62 83.9
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 1.3e-23 112.8 62 85.5
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 1.3e-23 112.8 62 85.5
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 2.8e-23 111.7 62 83.9
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.8e-23 111.7 62 83.9
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 3.7e-23 111.3 62 82.3
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 3.7e-23 111.3 62 82.3
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 3.7e-23 111.3 62 82.3
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 3.7e-23 111.3 62 82.3
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 3.7e-23 111.3 62 82.3
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 3.7e-23 111.3 62 82.3
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 3.7e-23 111.3 62 83.9
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 4.8e-23 110.9 62 82.3
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 4.8e-23 110.9 62 82.3
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 8.2e-23 110.2 62 80.6
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 8.2e-23 110.2 62 80.6
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 8.2e-23 110.2 87 67.8
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 8.2e-23 110.2 62 80.6
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 8.2e-23 110.2 62 82.3
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 1.1e-22 109.8 62 82.3
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 1.1e-22 109.8 62 80.6
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 1.4e-22 109.4 62 82.3
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.4e-22 109.4 62 82.3
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.8e-22 109.0 62 80.6
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 1.8e-22 109.0 62 80.6
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 1.8e-22 109.0 62 80.6
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 3.1e-22 108.2 62 79.0
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 4.0e-22 107.8 62 82.3
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 4.0e-22 107.8 62 80.6
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 4.0e-22 107.8 62 82.3
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 4.0e-22 107.8 62 82.3
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 4.0e-22 107.8 62 82.3
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 5.3e-22 107.5 62 80.6
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 6.9e-22 107.1 62 75.8
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 6.9e-22 107.1 62 75.8
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 6.9e-22 107.1 62 77.4
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 6.9e-22 107.1 62 80.6
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 6.9e-22 107.1 62 79.0
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 6.9e-22 107.1 62 80.6
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 6.9e-22 107.1 62 80.6
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 6.9e-22 107.1 62 77.4
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 6.9e-22 107.1 62 77.4
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 9.0e-22 106.7 62 80.6
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 9.0e-22 106.7 62 77.4
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 9.0e-22 106.7 62 79.0
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 1.2e-21 106.3 62 79.0
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 1.5e-21 105.9 62 79.0
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 1.5e-21 105.9 62 75.8
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 2.0e-21 105.5 62 79.0
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.0e-21 105.5 62 80.6
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 2.6e-21 105.1 62 74.2
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 2.6e-21 105.1 62 77.4
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 5.8e-21 104.0 62 77.4
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 5.8e-21 104.0 62 75.8
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 5.8e-21 104.0 62 75.8
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 5.8e-21 104.0 62 77.4
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 5.8e-21 104.0 62 77.4
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 5.8e-21 104.0 62 77.4
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 7.6e-21 103.6 62 74.2
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 1.0e-20 103.2 62 75.8
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 1.0e-20 103.2 62 75.8
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 1.0e-20 103.2 62 75.8
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 1.3e-20 102.8 62 77.4
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.3e-20 102.8 62 77.4
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.3e-20 102.8 62 75.8
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.7e-20 102.4 62 77.4
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.7e-20 102.4 62 75.8
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 1.7e-20 102.4 62 74.2
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 1.7e-20 102.4 62 75.8
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 2.2e-20 102.1 62 72.6
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 2.2e-20 102.1 62 74.2
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 2.2e-20 102.1 62 74.2
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.9e-20 101.7 62 75.8
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 2.9e-20 101.7 62 72.6
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.9e-20 101.7 62 74.2
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 2.9e-20 101.7 60 78.3
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 3.8e-20 101.3 62 72.6
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 3.8e-20 101.3 61 75.4
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 3.8e-20 101.3 62 72.6
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 3.8e-20 101.3 62 74.2
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 3.8e-20 101.3 62 74.2
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 4.9e-20 100.9 62 72.6
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 4.9e-20 100.9 62 74.2
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 4.9e-20 100.9 62 74.2
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 4.9e-20 100.9 62 74.2
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 6.5e-20 100.5 62 74.2
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 8.4e-20 100.1 60 78.3
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 8.4e-20 100.1 62 74.2
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 1.1e-19 99.8 62 72.6
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 1.1e-19 99.8 62 72.6
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.1e-19 99.8 62 74.2
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.1e-19 99.8 62 74.2
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.9e-19 99.0 63 76.2
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 4.2e-19 97.8 60 75.0
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 5.5e-19 97.4 60 73.3
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 7.1e-19 97.1 58 77.6
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 9.3e-19 96.7 62 71.0
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 2.1e-18 95.5 60 71.7
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 3.5e-18 94.7 60 68.3
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.5e-16 89.4 62 61.3
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 6.3e-15 84.0 60 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.8e-14 82.4 62 58.1
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 4.1e-14 81.3 60 63.3
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.3e-12 76.3 61 50.8
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 2.2e-12 75.5 62 61.3
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 3.8e-12 74.7 53 66.0
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.2e-11 71.6 42 73.8
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 7.2e-11 70.5 60 51.7
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 9.4e-11 70.1 60 46.7
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 2.1e-10 68.9 43 65.1
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 6.7e-09 63.9 62 58.1
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 1.5e-08 62.8 59 47.5
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 3.7e-07 58.2 60 40.0


User provided reference genes

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