Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 0.0e+00 1498.4 756 100.0
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 0.0e+00 1350.5 758 90.4
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 0.0e+00 1334.7 768 88.3
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 0.0e+00 1330.5 768 88.7
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 0.0e+00 1306.6 768 86.7
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 0.0e+00 1180.6 757 79.4
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 0.0e+00 1160.2 759 78.4
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 6.5e-305 1050.4 764 70.2
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 2.2e-300 1035.4 762 69.3
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 2.9e-297 1025.0 753 70.1
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 3.2e-296 1021.5 763 69.1
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 9.4e-296 1020.0 767 69.5
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 3.3e-293 1011.5 762 68.8
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 4.8e-292 1007.7 762 68.5
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 8.2e-292 1006.9 759 68.2
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 1.4e-291 1006.1 764 68.3
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.5e-290 1002.7 768 68.5
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 2.5e-288 995.3 758 67.8
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 5.5e-288 994.2 766 66.8
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 4.7e-287 991.1 757 67.2
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 4.7e-287 991.1 760 68.0
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 2.2e-284 982.2 760 67.9
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 2.8e-284 981.9 728 69.4
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 3.1e-283 978.4 758 67.3
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 9.1e-283 976.9 757 67.1
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 5.9e-282 974.2 762 66.0
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 3.8e-281 971.5 757 67.1
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 2.5e-280 968.8 762 65.9
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 4.4e-277 958.0 758 66.1
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 2.2e-276 955.7 759 64.6
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 8.2e-276 953.7 756 65.7
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.4e-275 953.0 606 82.2
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 5.0e-273 944.5 793 63.8
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 5.0e-273 944.5 759 65.1
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 6.5e-273 944.1 738 65.7
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 7.2e-272 940.6 752 65.6
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 1.2e-271 939.9 753 64.9
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 2.7e-271 938.7 758 65.2
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 2.7e-271 938.7 758 65.2
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 2.7e-271 938.7 752 65.4
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 3.6e-271 938.3 759 64.4
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 4.7e-271 937.9 766 65.1
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 4.7e-271 937.9 766 64.8
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 4.0e-270 934.9 765 63.9
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 5.2e-270 934.5 753 64.7
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 6.7e-270 934.1 743 64.9
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.5e-269 932.9 751 64.6
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 5.7e-269 931.0 750 65.3
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 2.2e-268 929.1 753 64.1
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 8.3e-268 927.2 763 63.8
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 4.5e-266 921.4 732 66.4
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 3.8e-265 918.3 751 63.9
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 5.0e-265 917.9 766 64.0
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.5e-264 915.6 758 63.6
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 4.2e-264 914.8 734 65.9
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 4.2e-264 914.8 734 65.3
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 2.1e-263 912.5 766 62.1
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 2.7e-263 912.1 780 62.7
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 1.0e-262 910.2 763 63.4
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.8e-262 909.4 809 60.3
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 3.1e-259 898.7 1011 51.7
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 5.9e-258 894.4 766 61.1
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 7.5e-253 877.5 754 60.7
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 8.3e-252 874.0 777 59.3
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 3.1e-251 872.1 719 62.9
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 1.3e-249 866.7 769 60.9
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 1.1e-248 863.6 746 59.5
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 4.3e-248 861.7 740 61.8
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 5.6e-248 861.3 749 60.2
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 7.3e-248 860.9 756 60.7
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 4.9e-244 848.2 657 68.2
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 6.4e-244 847.8 754 59.9
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 2.4e-243 845.9 741 60.7
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 1.0e-241 840.5 750 59.9
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 2.5e-240 835.9 780 58.2
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.2e-239 833.6 737 60.4
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 8.0e-239 830.9 740 59.9
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 2.3e-238 829.3 736 59.8
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.0e-238 828.6 727 60.4
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 4.0e-238 828.6 736 59.6
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.3e-236 823.5 965 50.8
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 1.1e-235 820.5 745 59.2
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 1.4e-235 820.1 753 57.1
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.3e-233 812.8 738 59.5
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 2.3e-230 802.7 772 56.9
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 1.3e-228 797.0 751 58.7
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 4.9e-228 795.0 753 57.0
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 5.4e-227 791.6 858 51.3
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 2.1e-223 779.6 741 56.8
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 6.2e-223 778.1 739 56.7
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 6.2e-223 778.1 764 53.7
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 5.2e-222 775.0 700 58.3
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 6.8e-222 774.6 650 62.9
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 5.8e-221 771.5 607 66.7
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 1.4e-219 766.9 751 55.9
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 7.6e-213 744.6 770 51.9
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 7.4e-184 648.3 500 67.0
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 8.2e-183 644.8 612 57.2
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 5.9e-173 612.1 719 47.7
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 1.1e-171 607.8 566 59.7
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 3.3e-168 596.3 754 46.6
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 1.0e-164 584.7 772 44.3
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 4.0e-161 572.8 771 43.3
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 1.7e-140 504.2 385 67.0
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.2e-130 471.5 327 78.6
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 3.4e-128 463.4 404 60.1
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 7.3e-123 445.7 259 88.8
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.5e-120 435.6 458 50.7
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.9e-119 433.0 294 79.6
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.8e-109 399.1 459 47.9
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.1e-108 396.4 489 47.0
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.7e-103 381.3 471 45.4
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 2.4e-102 377.5 279 76.0
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 1.1e-99 368.6 724 35.8
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 1.7e-92 344.7 315 58.7
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 3.9e-84 317.0 232 73.3
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 3.4e-80 303.9 1020 26.3
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 4.5e-72 276.9 184 70.7
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 1.3e-68 265.4 160 79.4
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 9.1e-57 226.1 387 39.8
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.7e-56 223.0 290 41.7
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 6.1e-53 213.4 163 63.2
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 7.4e-51 206.5 727 27.4
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 3.1e-49 201.1 124 76.6
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.7e-42 177.6 166 53.6
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 2.7e-37 161.4 171 53.8
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.3e-34 152.5 244 39.8
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.0e-32 145.2 283 41.0
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 1.2e-24 119.4 124 57.3
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.3e-22 110.2 103 53.4
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.8e-21 108.2 107 52.3
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 8.9e-20 103.2 64 79.7
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 5.7e-19 100.5 211 32.2
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 4.0e-12 77.8 66 53.0
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 1.5e-11 75.9 171 31.6
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 4.4e-11 74.3 158 31.0
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 2.2e-10 72.0 165 26.7
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 1.1e-09 69.7 54 57.4
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 1.4e-09 69.3 115 30.4
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.5e-08 64.7 45 66.7
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 4.6e-08 64.3 195 31.3
Actinidia11567 Actinidia chinensis HOM05D005074 ORTHO05D006853 7.8e-08 63.5 147 35.4
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 8.6e-07 60.1 37 70.3


User provided reference genes

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