Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 2.1e-106 389.0 196 100.0
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 7.0e-102 374.0 196 96.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.5e-101 371.3 192 96.9
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.5e-101 371.3 192 96.9
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.0e-100 370.2 192 96.4
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 7.5e-96 354.0 196 90.3
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 1.4e-86 323.2 197 84.8
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 4.5e-85 318.2 191 80.6
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 1.9e-83 312.8 195 80.0
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 1.2e-82 310.1 193 78.2
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 1.6e-82 309.7 190 79.5
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 2.8e-82 308.9 190 81.6
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 6.1e-82 307.8 194 77.3
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 6.1e-82 307.8 194 77.3
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 3.0e-81 305.4 191 79.1
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 4.0e-81 305.1 193 78.8
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 4.0e-81 305.1 190 77.4
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 8.9e-81 303.9 190 77.4
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 8.9e-81 303.9 190 79.5
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 1.5e-80 303.1 187 80.7
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 2.0e-80 302.8 194 77.3
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 3.4e-80 302.0 197 76.6
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 4.4e-80 301.6 197 77.2
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 7.5e-80 300.8 188 78.2
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 9.8e-80 300.4 190 78.4
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 9.8e-80 300.4 191 78.5
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 9.8e-80 300.4 191 77.0
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 1.3e-79 300.1 191 77.5
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 2.2e-79 299.3 190 77.4
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 2.2e-79 299.3 200 75.0
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 3.7e-79 298.5 193 77.2
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 3.7e-79 298.5 188 79.3
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 3.7e-79 298.5 196 73.5
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 8.3e-79 297.4 188 77.7
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 8.3e-79 297.4 188 77.7
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.4e-78 296.6 188 77.1
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 1.9e-78 296.2 191 77.0
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 2.4e-78 295.8 195 75.4
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 3.2e-78 295.4 192 76.0
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 5.4e-78 294.7 190 74.2
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 5.4e-78 294.7 192 75.0
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 5.4e-78 294.7 189 77.2
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 5.4e-78 294.7 188 77.1
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 7.0e-78 294.3 190 75.8
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 7.0e-78 294.3 195 74.4
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 7.0e-78 294.3 191 75.9
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 1.6e-77 293.1 192 75.5
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 1.6e-77 293.1 194 75.3
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 2.0e-77 292.7 193 77.2
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 6.0e-77 291.2 193 76.7
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 6.0e-77 291.2 188 76.6
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 7.8e-77 290.8 190 76.3
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 7.8e-77 290.8 188 76.1
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 1.0e-76 290.4 200 73.5
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 1.7e-76 289.7 193 71.5
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 1.7e-76 289.7 191 73.3
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 3.9e-76 288.5 188 75.0
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 3.9e-76 288.5 202 72.3
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 6.6e-76 287.7 190 75.3
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 6.6e-76 287.7 190 75.3
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 8.6e-76 287.3 192 74.5
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 8.6e-76 287.3 192 75.5
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 1.1e-75 287.0 190 74.2
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 1.9e-75 286.2 192 74.5
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.5e-75 285.8 196 74.5
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 5.6e-75 284.6 187 78.1
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 7.3e-75 284.3 189 74.6
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 9.5e-75 283.9 190 74.2
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 9.5e-75 283.9 199 73.4
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 3.6e-74 282.0 177 79.1
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 6.2e-74 281.2 189 74.1
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 8.0e-74 280.8 246 60.6
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 1.1e-73 280.4 189 74.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.1e-73 280.4 192 78.1
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 1.1e-73 280.4 246 60.6
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 1.4e-73 280.0 215 67.9
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 2.3e-73 279.3 190 74.2
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 6.8e-73 277.7 182 74.7
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 8.9e-73 277.3 186 74.7
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 1.2e-72 276.9 191 72.3
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.7e-71 273.1 190 70.5
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 2.9e-71 272.3 188 71.8
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 3.7e-71 271.9 204 69.6
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 6.4e-71 271.2 192 72.9
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 2.4e-70 269.2 199 68.8
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 1.3e-68 263.5 192 71.4
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 5.0e-68 261.5 162 77.8
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 1.1e-67 260.4 188 71.3
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 2.6e-64 249.2 185 64.9
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 3.2e-62 242.3 164 71.3
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 3.5e-61 238.8 190 62.1
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 1.5e-59 233.4 188 63.3
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 4.7e-58 228.4 185 62.2
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 3.1e-57 225.7 147 76.2
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.5e-56 223.4 163 68.7
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 4.9e-55 218.4 137 76.6
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 4.2e-54 215.3 191 61.3
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.2e-53 213.8 190 59.5
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 4.4e-48 195.3 257 47.9
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 1.7e-47 193.4 130 73.8
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 1.9e-46 189.9 121 79.3
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 7.8e-45 184.5 109 83.5
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 2.3e-44 183.0 138 66.7
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 8.7e-44 181.0 141 66.0
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 4.3e-43 178.7 113 76.1
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 4.8e-42 175.3 109 79.8
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 8.4e-39 164.5 115 69.6
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 1.2e-37 160.6 187 46.0
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 1.8e-36 156.8 202 45.5
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 2.5e-35 152.9 106 73.6
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 3.7e-34 149.1 86 81.4
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 6.2e-34 148.3 141 58.2
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 2.9e-31 139.4 102 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 3.8e-31 139.0 134 53.7
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 5.5e-30 135.2 140 59.3
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 4.2e-22 109.0 132 47.7
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 1.5e-19 100.5 62 79.0
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.3e-17 92.0 79 55.7
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 6.9e-17 91.7 199 33.2
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 9.4e-14 81.3 52 73.1
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 9.4e-14 81.3 78 51.3
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 7.4e-11 71.6 109 41.3
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 2.8e-10 69.7 51 64.7
Psat1g011800 Pisum sativum HOM05D006947 ORTHO05D008818 9.4e-06 54.7 50 54.0


User provided reference genes

Program Settings