Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 1.6e-290 1002.3 606 100.0
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 4.9e-247 857.8 607 82.9
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.1e-243 846.7 625 80.2
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 7.1e-238 827.4 626 82.3
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 6.1e-221 771.2 593 69.6
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 1.2e-163 580.9 587 54.5
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 3.6e-157 559.3 613 54.3
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.4e-155 552.7 607 53.4
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 2.1e-152 543.5 583 58.3
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 3.3e-142 509.6 581 49.9
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 5.4e-137 492.3 598 48.2
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 1.3e-133 481.1 589 48.4
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 2.0e-131 473.8 591 50.4
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 7.6e-131 471.9 583 46.7
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 2.7e-128 463.4 587 45.5
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 1.3e-127 461.1 584 48.8
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 3.9e-127 459.5 588 46.1
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 1.9e-126 457.2 585 44.3
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 7.4e-126 455.3 583 45.3
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.8e-124 450.7 596 44.5
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 3.1e-124 449.9 587 43.6
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 3.1e-124 449.9 583 44.1
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 6.9e-124 448.7 587 43.4
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 9.0e-124 448.4 601 43.8
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 2.0e-123 447.2 588 44.9
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 5.8e-123 445.7 625 43.0
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 3.8e-122 443.0 588 43.2
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 4.9e-122 442.6 341 62.8
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 1.9e-121 440.7 613 42.7
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 7.1e-121 438.7 591 42.8
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 9.3e-121 438.3 590 43.6
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 4.6e-120 436.0 343 60.6
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 1.3e-117 427.9 594 41.9
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 2.1e-117 427.2 594 42.4
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 1.2e-115 421.4 591 42.5
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 2.6e-115 420.2 590 42.2
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 4.5e-115 419.5 582 42.3
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 1.3e-114 417.9 583 42.7
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 2.2e-114 417.2 592 45.6
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 8.4e-114 415.2 582 41.6
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 1.6e-112 411.0 267 68.9
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 2.7e-112 410.2 575 42.6
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 7.9e-112 408.7 596 40.6
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.3e-111 407.9 603 41.3
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 3.0e-111 406.8 604 41.4
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 6.7e-111 405.6 580 39.7
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 3.3e-110 403.3 604 41.4
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 8.2e-109 398.7 583 39.8
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 8.2e-109 398.7 603 42.8
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 1.4e-108 397.9 580 40.0
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 1.4e-108 397.9 582 40.5
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.4e-108 397.9 242 72.7
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 1.8e-108 397.5 583 39.8
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 1.8e-108 397.5 584 43.3
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.4e-108 397.1 267 69.3
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 5.3e-108 396.0 242 72.7
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 4.5e-107 392.9 361 54.3
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 7.7e-107 392.1 609 39.6
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 5.0e-106 389.4 590 40.2
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 6.5e-106 389.0 583 39.5
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 8.5e-106 388.7 595 42.4
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 1.4e-105 387.9 631 53.1
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 5.5e-105 386.0 344 56.4
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 7.2e-105 385.6 329 58.1
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.2e-104 384.8 591 39.4
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 1.6e-104 384.4 588 37.9
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 4.6e-104 382.9 590 38.0
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 1.0e-103 381.7 341 56.3
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 2.3e-103 380.6 579 41.6
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 3.9e-103 379.8 586 38.9
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.1e-102 378.3 311 57.6
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 5.7e-102 375.9 587 39.9
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.2e-101 374.0 588 38.3
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 6.3e-101 372.5 581 40.6
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.4e-100 371.3 602 39.5
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 5.9e-99 365.9 322 55.0
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 1.1e-97 361.7 330 54.5
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 3.6e-96 356.7 614 38.4
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 6.1e-96 355.9 577 38.8
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 6.1e-96 355.9 583 37.4
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 1.4e-95 354.8 597 38.5
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.8e-95 354.4 597 38.7
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 3.0e-95 353.6 590 37.8
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 3.9e-95 353.2 337 54.9
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 5.1e-95 352.8 581 37.9
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 8.8e-95 352.1 590 37.8
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 2.2e-93 347.4 324 51.9
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 4.8e-93 346.3 587 38.2
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 6.3e-93 345.9 588 38.4
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 8.2e-93 345.5 311 55.6
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.4e-92 344.7 588 36.7
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 1.2e-91 341.7 333 53.2
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 2.0e-91 340.9 311 55.3
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 4.5e-91 339.7 258 61.6
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 2.2e-90 337.4 264 56.1
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 2.9e-90 337.0 580 36.2
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 1.5e-89 334.7 617 37.1
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 3.2e-89 333.6 618 36.2
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 6.1e-88 329.3 585 37.8
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 1.4e-87 328.2 568 38.7
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 6.7e-87 325.9 580 37.1
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.8e-84 317.8 594 36.4
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.6e-83 314.7 613 34.3
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 4.5e-83 313.2 525 39.0
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 5.0e-82 309.7 263 55.9
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.2e-80 305.1 273 56.4
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 6.1e-80 302.8 612 37.9
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 4.8e-77 293.1 497 39.4
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 5.0e-74 283.1 581 37.3
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 8.5e-74 282.3 312 47.8
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.6e-72 278.1 574 35.4
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 3.0e-71 273.9 199 60.8
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 8.8e-71 272.3 253 50.6
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.7e-69 268.1 343 41.1
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.3e-69 266.2 529 36.1
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.4e-68 264.2 310 46.5
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 4.1e-68 263.5 241 51.0
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 4.1e-68 263.5 506 37.0
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 2.6e-62 244.2 240 47.9
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 4.4e-62 243.4 583 31.6
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.3e-61 241.9 183 58.5
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 4.1e-60 236.9 183 59.0
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 9.2e-60 235.7 488 34.0
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 4.6e-59 233.4 537 32.8
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.3e-53 215.3 479 32.4
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.9e-49 201.4 408 38.5
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.9e-45 187.6 133 59.4
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.9e-42 177.2 279 39.4
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 9.9e-38 162.5 184 42.4
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 3.2e-36 157.5 126 61.1
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 5.8e-30 136.7 147 48.3
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 1.1e-25 122.5 74 77.0
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 1.9e-25 121.7 544 26.1
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 8.1e-24 116.3 65 78.5
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 1.8e-23 115.2 67 74.6
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.6e-22 109.8 150 41.3
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 7.9e-19 99.8 114 39.5
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 5.1e-18 97.1 106 46.2
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 9.6e-17 92.8 91 52.7
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 8.1e-16 89.7 74 52.7
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 2.4e-15 88.2 332 28.0
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 4.0e-15 87.4 93 49.5
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.6e-14 84.7 99 49.5
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.6e-14 84.7 99 49.5
RcHm_v2.0_Chr2g0108841 Rosa chinensis HOM05D004664 ORTHO05D005526 7.6e-14 83.2 66 68.2
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 6.4e-13 80.1 124 45.2
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.7e-11 74.7 80 51.2
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.0e-11 73.6 91 49.5
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 1.8e-10 72.0 376 24.7
FAN18G1652 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.0e-06 58.5 42 71.4
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 4.5e-06 57.4 103 34.0
RcHm_v2.0_Chr7g0217251 Rosa chinensis HOM05D004664 ORTHO05D348589 1.0e-05 56.2 35 74.3


User provided reference genes

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