Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0147101 Rosa chinensis HOM05D000809 ORTHO05D007733 1.1e-23 112.5 56 100.0
RcHm_v2.0_Chr3g0496131 Rosa chinensis HOM05D000809 ORTHO05D007733 1.1e-10 69.3 48 79.2
FvH4_1g05310 Fragaria vesca HOM05D000809 ORTHO05D007733 2.0e-09 65.1 32 96.9
FAN19G0453 Fragaria x ananassa HOM05D000809 ORTHO05D007733 2.0e-09 65.1 32 96.9
FAN26G0422 Fragaria x ananassa HOM05D000809 ORTHO05D007733 2.0e-09 65.1 32 96.9
FAN26G2813 Fragaria x ananassa HOM05D000809 ORTHO05D007733 2.0e-09 65.1 32 96.9
RcHm_v2.0_Chr2g0091011 Rosa chinensis HOM05D000809 ORTHO05D007733 2.0e-09 65.1 32 96.9
MD15G1189200 Malus domestica HOM05D000809 ORTHO05D007733 9.8e-09 62.8 62 56.5
CAN.G1710.9 Capsicum annuum HOM05D000809 ORTHO05D007733 1.3e-08 62.4 32 90.6
Nitab4.5_0001672g0130 Nicotiana tabacum HOM05D000809 ORTHO05D007733 1.3e-08 62.4 32 90.6
Nitab4.5_0003537g0040 Nicotiana tabacum HOM05D000809 ORTHO05D007733 1.3e-08 62.4 32 90.6
Solyc12g007010.2 Solanum lycopersicum HOM05D000809 ORTHO05D007733 1.3e-08 62.4 32 90.6
Sopen12g002980 Solanum pennellii HOM05D000809 ORTHO05D007733 1.3e-08 62.4 32 90.6
PGSC0003DMG400000383 Solanum tuberosum HOM05D000809 ORTHO05D007733 1.3e-08 62.4 32 90.6
Aqoxy7G01822 Aquilegia oxysepala HOM05D000809 ORTHO05D007733 1.7e-08 62.0 32 87.5
CANSAT56G3015 Cannabis sativa HOM05D000809 ORTHO05D007733 1.7e-08 62.0 32 87.5
TWI34G1334 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 1.7e-08 62.0 32 90.6
Prupe.7G227600 Prunus persica HOM05D000809 ORTHO05D007733 2.2e-08 61.6 32 87.5
THA.LOC104808749 Tarenaya hassleriana HOM05D000809 ORTHO05D007733 2.2e-08 61.6 32 87.5
TWI63G1087 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 2.2e-08 61.6 32 87.5
C07p56430 Brassica napus HOM05D000809 ORTHO05D007733 2.9e-08 61.2 32 87.5
BolC7t46122H Brassica oleracea HOM05D000809 ORTHO05D007733 2.9e-08 61.2 32 87.5
CDE06G2677 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 2.9e-08 61.2 32 87.5
Nn8g39257 Nelumbo nucifera HOM05D000809 ORTHO05D007733 2.9e-08 61.2 32 87.5
Oeu000378.3 Olea europaea HOM05D000809 ORTHO05D007733 2.9e-08 61.2 32 87.5
Oeu013437.1 Olea europaea HOM05D000396 ORTHO05D007733 2.9e-08 61.2 32 87.5
Peaxi162Scf00546g00322 Petunia axillaris HOM05D000809 ORTHO05D007733 2.9e-08 61.2 32 87.5
unitig_899.g15426 Utricularia gibba HOM05D000809 ORTHO05D007733 3.7e-08 60.8 32 87.5
Actinidia32693 Actinidia chinensis HOM05D000809 ORTHO05D007733 4.9e-08 60.5 32 84.4
EL10Ac8g18530 Beta vulgaris HOM05D000809 ORTHO05D007733 6.4e-08 60.1 32 87.5
BcaC06g32603 Brassica carinata HOM05D000809 ORTHO05D007733 6.4e-08 60.1 32 84.4
CSS0004763 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 6.4e-08 60.1 32 84.4
CSS0005642 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 6.4e-08 60.1 32 84.4
AUR62011020 Chenopodium quinoa HOM05D000809 ORTHO05D007733 6.4e-08 60.1 32 84.4
COL.COLO4_34883 Corchorus olitorius HOM05D000809 ORTHO05D007733 6.4e-08 60.1 32 84.4
Sp3g24440 Schrenkiella parvula HOM05D000809 ORTHO05D007733 6.4e-08 60.1 32 84.4
SpUn0651_0010 Schrenkiella parvula HOM05D000809 ORTHO05D007733 6.4e-08 60.1 32 84.4
Ah.10g029140 Amaranthus hybridus HOM05D000809 ORTHO05D007733 8.3e-08 59.7 32 84.4
CARHR100520 Cardamine hirsuta HOM05D000809 ORTHO05D007733 8.3e-08 59.7 32 81.2
Eucgr.C03953 Eucalyptus grandis HOM05D000809 ORTHO05D007733 8.3e-08 59.7 32 78.1
Thhalv10002483m.g Eutrema salsugineum HOM05D000809 ORTHO05D007733 8.3e-08 59.7 32 81.2
PGR102G2432 Punica granatum HOM05D000809 ORTHO05D007733 8.3e-08 59.7 32 84.4
Hund09189 Selenicereus undatus HOM05D000809 ORTHO05D007733 8.3e-08 59.7 56 58.9
GSVIVG01015424001 Vitis vinifera HOM05D000809 ORTHO05D007733 8.3e-08 59.7 32 81.2
A03p58410 Brassica napus HOM05D000809 ORTHO05D007733 1.4e-07 58.9 32 81.2
BraA03t14902Z Brassica rapa HOM05D000809 ORTHO05D007733 1.4e-07 58.9 32 81.2
CDE04G2267 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 1.4e-07 58.9 32 84.4
Ca_25514_v3 Cicer arietinum L. HOM05D000809 ORTHO05D007733 1.4e-07 58.9 32 84.4
Eucgr.C03960 Eucalyptus grandis HOM05D000809 ORTHO05D007733 1.4e-07 58.9 32 81.2
Cc06_g09380 Coffea canephora HOM05D000809 ORTHO05D007733 1.9e-07 58.5 32 81.2
Rhsim01G0091800 Rhododendron simsii HOM05D000809 ORTHO05D007733 1.9e-07 58.5 32 81.2
MELO3C025316.2 Cucumis melo HOM05D000809 ORTHO05D007733 2.4e-07 58.2 32 78.1
CsaV3_1G030840 Cucumis sativus L. HOM05D000809 ORTHO05D007733 2.4e-07 58.2 32 78.1
Duzib168G1885 Durio zibethinus HOM05D000809 ORTHO05D007733 2.4e-07 58.2 32 81.2
Eucgr.C04130 Eucalyptus grandis HOM05D000809 ORTHO05D007733 2.4e-07 58.2 32 81.2
MD02G1056300 Malus domestica HOM05D000809 ORTHO05D007733 2.4e-07 58.2 32 87.5
HPP92_006444 Vanilla planifolia HOM05D000809 ORTHO05D007733 2.4e-07 58.2 32 81.2
Aa31LG8G11120 Aethionema arabicum HOM05D000809 ORTHO05D007733 3.2e-07 57.8 32 78.1
Thecc.09G114200 Theobroma cacao HOM05D000809 ORTHO05D007733 3.2e-07 57.8 32 81.2
TAR624G0463 Trochodendron aralioides HOM05D000809 ORTHO05D007733 3.2e-07 57.8 32 78.1
vmacro20667 Vaccinium macrocarpon HOM05D000809 ORTHO05D007733 3.2e-07 57.8 32 78.1
AL3G39860 Arabidopsis lyrata HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 78.1
AT3G24430 Arabidopsis thaliana HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 78.1
Carub.0003s2473 Capsella rubella HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 78.1
Gohir.A05G021400 Gossypium hirsutum HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 81.2
Gohir.D05G022766 Gossypium hirsutum HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 81.2
Gohir.D05G022900 Gossypium hirsutum HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 81.2
Gorai.009G023100 Gossypium raimondii HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 81.2
Manes.16G070800 Manihot esculenta HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 78.1
Nn2g11810 Nelumbo nucifera HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 81.2
PSO063G5751 Papaver somniferum HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 81.2
PSO782G1122 Papaver somniferum HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 81.2
QL02p085975 Quercus lobata HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 81.2
SGA_v2.0_scaffold109G31030 Striga asiatica HOM05D000809 ORTHO05D007733 4.1e-07 57.4 32 78.1
Cfa003287 Carpinus fangiana HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 81.2
ClCG06G010380 Citrullus lanatus HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 75.0
Ciclev10007988m.g Citrus clementina HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 78.1
Migut.K00460 Erythranthe guttata HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 81.2
Glyma.07G089200 Glycine max HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 81.2
Glyma.09G187800 Glycine max HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 81.2
Lj2g0016022 Lotus japonicus HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 81.2
Lalb_Chr24g0397641 Lupinus albus HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 81.2
Medtr6g086600 Medicago truncatula HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 81.2
Phvul.004G160900 Phaseolus vulgaris HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 81.2
SalBow1G2443 Salvia bowleyana HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 81.2
TPR.G31450 Trifolium pratense HOM05D000809 ORTHO05D007733 5.4e-07 57.0 32 81.2
CiPaw.03G234800 Carya illinoinensis HOM05D000809 ORTHO05D007733 7.0e-07 56.6 32 81.2
Sc08g0007210 Simmondsia chinensis HOM05D000809 ORTHO05D007733 7.0e-07 56.6 32 78.1
TAR626G0858 Trochodendron aralioides HOM05D000809 ORTHO05D007733 7.0e-07 56.6 32 78.1
Atru.chr7.1304 Acer truncatum HOM05D000809 ORTHO05D007733 9.2e-07 56.2 32 75.0
arahy.Tifrunner.gnm1.ann1.G2DL39 Arachis hypogaea HOM05D000809 ORTHO05D007733 9.2e-07 56.2 32 78.1
arahy.Tifrunner.gnm1.ann1.JACH1V Arachis hypogaea HOM05D000809 ORTHO05D007733 9.2e-07 56.2 32 78.1
DCAR_012086 Daucus carota HOM05D000809 ORTHO05D007733 9.2e-07 56.2 32 78.1
ECA238G4585 Erigeron canadensis HOM05D000809 ORTHO05D007733 9.2e-07 56.2 32 81.2
Sabra18G0064600 Salix brachista HOM05D000809 ORTHO05D007733 9.2e-07 56.2 33 75.8
Cpa.g.sc23.132 Carica papaya HOM05D000809 ORTHO05D007733 1.2e-06 55.8 32 78.1
Haze_25686 Corylus avellana HOM05D000809 ORTHO05D007733 1.2e-06 55.8 46 58.7
Eucgr.C03955 Eucalyptus grandis HOM05D000809 ORTHO05D007733 1.2e-06 55.8 32 78.1
Psat1g039560 Pisum sativum HOM05D000809 ORTHO05D007733 1.2e-06 55.8 32 78.1
VMungo0464G1974 Vigna mungo HOM05D000809 ORTHO05D007733 1.2e-06 55.8 32 81.2
ATR0037G048 Amborella trichopoda HOM05D000809 ORTHO05D007733 1.6e-06 55.5 32 75.0
MSTRG.10680 Avicennia marina HOM05D000809 ORTHO05D007733 1.6e-06 55.5 32 81.2
Lsat_1_v5_gn_8_93401 Lactuca sativa HOM05D000809 ORTHO05D007733 2.1e-06 55.1 32 78.1
CBR_g30185 Chara braunii HOM05D000809 ORTHO05D007733 2.7e-06 54.7 33 69.7
Dinv36606 Davidia involucrata HOM05D000809 ORTHO05D007733 3.5e-06 54.3 32 78.1
Zm00001eb089070 Zea mays HOM05D000809 ORTHO05D007733 3.5e-06 54.3 32 75.0
HanXRQChr05g0137991 Helianthus annuus HOM05D000809 ORTHO05D007733 4.6e-06 53.9 32 75.0
Sed0012141 Sechium edule HOM05D000809 ORTHO05D007733 4.6e-06 53.9 32 71.9


User provided reference genes

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