Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0146651 Rosa chinensis HOM05D000246 ORTHO05D015415 1.6e-64 249.2 122 100.0
RcHm_v2.0_Chr4g0402091 Rosa chinensis HOM05D002478 ORTHO05D015415 1.0e-50 203.4 101 98.0
RcHm_v2.0_Chr2g0101731 Rosa chinensis HOM05D000246 ORTHO05D015415 4.7e-40 167.9 85 96.5
RcHm_v2.0_Chr7g0221231 Rosa chinensis HOM05D000246 ORTHO05D005396 1.1e-39 166.8 153 62.1
FAN13G0468 Fragaria x ananassa HOM05D000246 ORTHO05D005396 6.6e-34 147.5 153 54.2
FvH4_5g28920 Fragaria vesca HOM05D000246 ORTHO05D005396 4.3e-33 144.8 152 54.6
FAN04G2409 Fragaria x ananassa HOM05D000246 ORTHO05D005396 7.3e-33 144.1 152 53.9
MD07G1057400 Malus domestica HOM05D000246 ORTHO05D005396 5.4e-28 127.9 153 49.7
MD02G1262900 Malus domestica HOM05D000246 ORTHO05D005396 7.1e-28 127.5 153 49.7
Ciclev10000077m.g Citrus clementina HOM05D000246 ORTHO05D005396 9.6e-25 117.1 147 44.9
Prupe.4G271400 Prunus persica HOM05D000246 ORTHO05D005396 9.6e-25 117.1 154 48.1
FAN18G0190 Fragaria x ananassa HOM05D000246 ORTHO05D005396 1.6e-24 116.3 64 84.4
Haze_01763 Corylus avellana HOM05D000246 ORTHO05D005396 4.8e-24 114.8 154 46.1
GSVIVG01023325001 Vitis vinifera HOM05D000246 ORTHO05D005396 6.2e-24 114.4 151 44.4
Hma1.2p1_2221F.1_g317340 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 1.4e-23 113.2 154 42.9
Hma1.2p1_3213F.1_g334020 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 1.4e-23 113.2 154 42.9
Thecc.02G089200 Theobroma cacao HOM05D000246 ORTHO05D005396 3.1e-23 112.1 148 43.2
CiPaw.05G049800 Carya illinoinensis HOM05D000246 ORTHO05D005396 1.2e-22 110.2 153 43.1
Dinv24306 Davidia involucrata HOM05D000246 ORTHO05D005396 3.4e-22 108.6 153 43.1
COL.COLO4_11772 Corchorus olitorius HOM05D000246 ORTHO05D005396 1.7e-21 106.3 148 43.9
Manes.10G122800 Manihot esculenta HOM05D000246 ORTHO05D005396 2.2e-21 105.9 148 41.9
Nitab4.5_0008546g0020 Nicotiana tabacum HOM05D000246 ORTHO05D005396 2.2e-21 105.9 153 39.9
Sabra03G0009400 Salix brachista HOM05D000246 ORTHO05D005396 4.9e-21 104.8 163 39.3
Nitab4.5_0001744g0020 Nicotiana tabacum HOM05D000246 ORTHO05D005396 1.1e-20 103.6 153 39.2
Gohir.A13G035800 Gossypium hirsutum HOM05D000246 ORTHO05D005396 1.9e-20 102.8 148 38.5
Duzib132G0704 Durio zibethinus HOM05D000246 ORTHO05D005396 3.2e-20 102.1 148 40.5
Peaxi162Scf00011g00639 Petunia axillaris HOM05D000246 ORTHO05D005396 3.2e-20 102.1 151 39.1
CSS0013369 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 4.2e-20 101.7 151 43.0
CSS0032566 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 4.2e-20 101.7 151 43.0
COL.COLO4_11770 Corchorus olitorius HOM05D000246 ORTHO05D005396 7.1e-20 100.9 148 41.9
QL02p099436 Quercus lobata HOM05D000246 ORTHO05D005396 7.1e-20 100.9 154 41.6
Gohir.D13G034100 Gossypium hirsutum HOM05D000246 ORTHO05D005396 1.2e-19 100.1 148 38.5
TWI59G0870 Tripterygium wilfordii HOM05D000246 ORTHO05D005396 1.6e-19 99.8 144 44.4
Actinidia39024 Actinidia chinensis HOM05D000246 ORTHO05D005396 2.1e-19 99.4 152 42.8
MBI17_g20812_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005396 4.6e-19 98.2 157 38.2
Oeu032246.1 Olea europaea HOM05D000246 ORTHO05D005396 4.6e-19 98.2 151 35.1
Gorai.013G038600 Gossypium raimondii HOM05D000246 ORTHO05D005396 1.7e-18 96.3 148 37.8
ECA234G4461 Erigeron canadensis HOM05D000246 ORTHO05D005396 3.0e-18 95.5 154 37.7
PGR042G0910 Punica granatum HOM05D000246 ORTHO05D005396 6.6e-18 94.4 154 40.3
CANSAT11G0299 Cannabis sativa HOM05D000246 ORTHO05D005396 1.5e-17 93.2 152 40.1
TAR624G1231 Trochodendron aralioides HOM05D000246 ORTHO05D005396 3.3e-17 92.0 153 39.9
Lsat_1_v5_gn_9_121000 Lactuca sativa HOM05D000246 ORTHO05D005396 9.6e-17 90.5 152 40.8
Sabra03G0008800 Salix brachista HOM05D000246 ORTHO05D005396 1.6e-16 89.7 202 31.2
Migut.B00814 Erythranthe guttata HOM05D000246 ORTHO05D005396 2.8e-16 89.0 153 35.3
HanXRQChr03g0065231 Helianthus annuus HOM05D000246 ORTHO05D005396 8.1e-16 87.4 154 39.6
ClCG05G009530 Citrullus lanatus HOM05D000246 ORTHO05D005396 1.4e-15 86.7 153 39.2
Eucgr.G00562 Eucalyptus grandis HOM05D000246 ORTHO05D005396 1.4e-15 86.7 154 39.6
BolC8t49040H Brassica oleracea HOM05D000246 ORTHO05D005396 1.8e-15 86.3 151 39.1
DCAR_006693 Daucus carota HOM05D000246 ORTHO05D005396 1.8e-15 86.3 153 35.3
Atru.chr6.554 Acer truncatum HOM05D000246 ORTHO05D005396 2.4e-15 85.9 64 65.6
A08p33740 Brassica napus HOM05D000246 ORTHO05D005396 3.1e-15 85.5 151 39.1
C08p14030 Brassica napus HOM05D000246 ORTHO05D005396 3.1e-15 85.5 151 39.1
BraA08t35290Z Brassica rapa HOM05D000246 ORTHO05D005396 3.1e-15 85.5 151 39.1
BcaC07g38599 Brassica carinata HOM05D000246 ORTHO05D005396 6.9e-15 84.3 151 39.1
MD07G1056800 Malus domestica HOM05D000246 ORTHO05D005396 9.0e-15 84.0 56 73.2
Solyc01g103960.3 Solanum lycopersicum HOM05D000246 ORTHO05D005396 9.0e-15 84.0 161 34.8
Sopen01g046350 Solanum pennellii HOM05D000246 ORTHO05D005396 9.0e-15 84.0 161 34.8
Potri.003G015800 Populus trichocarpa HOM05D000246 ORTHO05D005396 1.5e-14 83.2 64 59.4
SGA_v2.0_scaffold110G31337 Striga asiatica HOM05D000246 ORTHO05D005396 1.5e-14 83.2 154 33.8
Aqoxy5G02652 Aquilegia oxysepala HOM05D000246 ORTHO05D005396 2.6e-14 82.4 152 36.8
Nn2g14796 Nelumbo nucifera HOM05D000246 ORTHO05D005396 3.4e-14 82.0 152 35.5
AL1G21910 Arabidopsis lyrata HOM05D000246 ORTHO05D005396 5.8e-14 81.3 151 35.1
AT1G10930 Arabidopsis thaliana HOM05D000246 ORTHO05D005396 5.8e-14 81.3 151 35.1
Lsat_1_v5_gn_5_105701 Lactuca sativa HOM05D000246 ORTHO05D005396 7.6e-14 80.9 152 35.5
Rhsim11G0127500 Rhododendron simsii HOM05D000246 ORTHO05D005396 7.6e-14 80.9 152 37.5
Sed0017184 Sechium edule HOM05D000246 ORTHO05D005396 9.9e-14 80.5 153 35.9
BcaNung06376 Brassica carinata HOM05D000246 ORTHO05D005396 2.2e-13 79.3 151 37.7
BolC8t52382H Brassica oleracea HOM05D000246 ORTHO05D005396 2.2e-13 79.3 151 37.7
BraA09t41819Z Brassica rapa HOM05D000246 ORTHO05D005396 2.2e-13 79.3 150 38.7
Cc02_g22770 Coffea canephora HOM05D000246 ORTHO05D005396 3.8e-13 78.6 64 54.7
C08p48440 Brassica napus HOM05D000246 ORTHO05D005396 4.9e-13 78.2 151 37.1
Sc10g0005930 Simmondsia chinensis HOM05D000246 ORTHO05D005396 4.9e-13 78.2 138 37.0
Hund06556 Selenicereus undatus HOM05D000246 ORTHO05D005396 8.4e-13 77.4 164 34.1
CDE08G1044 Ceratophyllum demersum HOM05D000246 ORTHO05D005396 1.1e-12 77.0 150 35.3
Lj5C254G21 Lonicera japonica HOM05D000246 ORTHO05D005396 1.1e-12 77.0 153 36.6
MSTRG.16508 Avicennia marina HOM05D000246 ORTHO05D005396 1.9e-12 76.3 153 33.3
Carub.0001s1051 Capsella rubella HOM05D000246 ORTHO05D005396 3.2e-12 75.5 151 35.8
CsaV3_3G019190 Cucumis sativus L. HOM05D000246 ORTHO05D005396 3.2e-12 75.5 153 36.6
MELO3C019447.2 Cucumis melo HOM05D000246 ORTHO05D005396 4.2e-12 75.1 153 35.9
Thhalv10006602m.g Eutrema salsugineum HOM05D000246 ORTHO05D005396 4.2e-12 75.1 151 35.1
PSO017G1629 Papaver somniferum HOM05D000246 ORTHO05D005396 5.4e-12 74.7 153 34.6
Cpa.g.sc31.53 Carica papaya HOM05D000246 ORTHO05D005396 9.3e-12 73.9 148 36.5
BcaNung06375 Brassica carinata HOM05D000246 ORTHO05D005396 1.6e-11 73.2 150 36.0
CARHR011150 Cardamine hirsuta HOM05D000246 ORTHO05D005396 1.6e-11 73.2 151 33.1
CDE04G3613 Ceratophyllum demersum HOM05D000246 ORTHO05D005396 2.1e-11 72.8 152 32.9
EL10Ac9g21897 Beta vulgaris HOM05D000246 ORTHO05D005396 2.7e-11 72.4 178 30.9
Sp1g09640 Schrenkiella parvula HOM05D000246 ORTHO05D005396 3.5e-11 72.0 148 34.5
AUR62011515 Chenopodium quinoa HOM05D000246 ORTHO05D005396 4.6e-11 71.6 176 31.8
Ca_00062_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005396 4.6e-11 71.6 150 34.7
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 6.0e-11 71.2 151 35.8
AUR62016334 Chenopodium quinoa HOM05D000246 ORTHO05D005396 7.9e-11 70.9 176 30.7
arahy.Tifrunner.gnm1.ann1.P64QHW Arachis hypogaea HOM05D000246 ORTHO05D005396 1.8e-10 69.7 151 35.1
Lj6g0022943 Lotus japonicus HOM05D000246 ORTHO05D005396 1.8e-10 69.7 153 34.6
vmacro01744 Vaccinium macrocarpon HOM05D000246 ORTHO05D005396 2.3e-10 69.3 192 29.2
arahy.Tifrunner.gnm1.ann1.V2A8TE Arachis hypogaea HOM05D000246 ORTHO05D005396 3.0e-10 68.9 148 35.8
Psat1g222120 Pisum sativum HOM05D000246 ORTHO05D005396 3.0e-10 68.9 153 34.6
TPR.G2105 Trifolium pratense HOM05D000246 ORTHO05D005396 3.0e-10 68.9 144 33.3
TPR.G23583 Trifolium pratense HOM05D000246 ORTHO05D005396 3.0e-10 68.9 144 33.3
Haze_01708 Corylus avellana HOM05D000001 ORTHO05D000003 3.9e-10 68.6 61 59.0
HanXRQChr10g0298131 Helianthus annuus HOM05D000246 ORTHO05D005396 1.9e-09 66.2 150 34.0
Medtr2g006440 Medicago truncatula HOM05D000246 ORTHO05D005396 1.9e-09 66.2 150 32.0
CAN.G798.21 Capsicum annuum HOM05D000246 ORTHO05D005396 1.3e-08 63.5 60 50.0
unitig_8.g4526 Utricularia gibba HOM05D000246 ORTHO05D005396 1.3e-08 63.5 88 39.8
VMungo0540G2260 Vigna mungo HOM05D000246 ORTHO05D005396 1.3e-08 63.5 153 34.0
Lalb_Chr20g0123591 Lupinus albus HOM05D000246 ORTHO05D005396 4.8e-08 61.6 165 30.9
Phvul.006G216200 Phaseolus vulgaris HOM05D000246 ORTHO05D005396 6.2e-08 61.2 153 34.0
Thhalv10023226m.g Eutrema salsugineum HOM05D000246 ORTHO05D005396 1.1e-07 60.5 143 31.5
Aa31LG1G3940 Aethionema arabicum HOM05D000246 ORTHO05D005396 1.4e-07 60.1 150 31.3
Glyma.08G188100 Glycine max HOM05D000246 ORTHO05D005396 1.8e-07 59.7 153 30.7
THA.LOC104809610 Tarenaya hassleriana HOM05D000246 ORTHO05D005396 1.8e-07 59.7 149 32.9
BcaC04g22293 Brassica carinata HOM05D000246 ORTHO05D005396 2.4e-07 59.3 151 29.1
C09p21060 Brassica napus HOM05D000246 ORTHO05D005396 2.4e-07 59.3 151 29.1
BolC9t55007H Brassica oleracea HOM05D000246 ORTHO05D005396 2.4e-07 59.3 151 29.1
CARHR051950 Cardamine hirsuta HOM05D000246 ORTHO05D005396 2.4e-07 59.3 149 29.5
SHI16631 Sapria himalayana HOM05D000246 ORTHO05D005396 3.1e-07 58.9 147 28.6
A09p17030 Brassica napus HOM05D000246 ORTHO05D005396 4.0e-07 58.5 151 29.1
BraA09t37338Z Brassica rapa HOM05D000246 ORTHO05D005396 4.0e-07 58.5 151 29.1
BcaB07g31246 Brassica carinata HOM05D000246 ORTHO05D005396 1.5e-06 56.6 150 26.0
Sp2g03660 Schrenkiella parvula HOM05D000246 ORTHO05D005396 1.5e-06 56.6 146 28.8
A09p64760 Brassica napus HOM05D000246 ORTHO05D005396 2.0e-06 56.2 66 50.0
Carub.0002s0433 Capsella rubella HOM05D000246 ORTHO05D005396 2.6e-06 55.8 149 27.5
Glyma.12G170000 Glycine max HOM05D000246 ORTHO05D005396 5.8e-06 54.7 152 30.3
Ah.01g020570 Amaranthus hybridus HOM05D000246 ORTHO05D005396 1.0e-05 53.9 31 74.2


User provided reference genes

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