Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 2362.8 1341 100.0
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 1952.9 1356 84.7
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1947.6 1377 83.4
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1928.3 1381 82.5
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1919.8 1381 83.9
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1911.3 1409 81.3
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1577.0 1386 72.8
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1559.7 1387 71.3
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1556.2 1380 69.8
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1380.9 1381 66.0
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1328.5 1393 64.3
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1309.3 1378 60.9
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1299.3 1435 62.8
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1298.1 1407 62.8
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1271.9 1404 60.7
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1265.8 1394 59.0
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1265.0 1392 56.9
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1256.1 1403 60.7
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1242.3 1393 57.6
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1230.3 1400 60.4
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1209.9 1411 59.4
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1208.7 1401 57.5
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1205.7 1375 58.8
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1204.5 1407 57.1
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1202.6 1378 58.3
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1198.7 1379 59.0
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1195.3 1399 58.8
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1191.0 1381 57.7
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1190.6 1332 59.6
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1189.1 1391 60.2
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1188.7 1377 56.6
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1186.0 1393 58.6
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1180.6 1398 58.3
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1176.8 1369 58.1
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1173.7 1399 57.1
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1172.5 1400 57.0
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1171.8 1381 57.2
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 0.0e+00 1167.5 1410 59.1
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1167.1 1416 58.7
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1162.5 1473 54.3
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1161.4 1377 56.1
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 0.0e+00 1160.6 1386 55.9
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 0.0e+00 1155.2 1396 56.3
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1153.7 1402 56.5
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1152.9 1385 55.9
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 0.0e+00 1151.0 1409 56.8
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1146.3 1408 56.1
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1140.2 1406 58.0
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1140.2 1407 56.0
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1127.5 1398 54.4
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 0.0e+00 1127.5 1375 55.3
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1125.2 1428 57.1
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1122.5 1392 55.6
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 0.0e+00 1099.3 1366 55.9
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1092.8 1223 61.4
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1080.9 1393 53.9
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1078.5 1395 55.0
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 0.0e+00 1076.2 1416 52.6
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 5.9e-309 1064.7 1381 52.3
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 1.3e-308 1063.5 1528 51.6
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 8.8e-305 1050.8 1376 52.8
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 4.2e-299 1031.9 1362 53.3
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.2e-298 1030.4 1445 57.4
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 3.3e-296 1022.3 1456 49.6
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 9.7e-296 1020.8 1239 53.9
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.4e-294 1016.9 1408 54.9
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 2.6e-293 1012.7 1385 49.3
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 2.3e-289 999.6 1238 58.3
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 4.4e-288 995.3 1407 50.4
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 1.3e-287 993.8 1259 51.4
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 3.5e-285 985.7 1418 48.9
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 3.5e-285 985.7 1445 46.8
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 2.2e-284 983.0 1425 49.5
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 8.5e-284 981.1 1438 48.7
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 1.1e-283 980.7 1059 56.2
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 6.1e-282 974.9 1407 48.5
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 8.0e-282 974.5 1392 48.2
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 4.8e-279 965.3 1369 49.4
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 1.1e-278 964.1 1429 48.9
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 7.0e-278 961.4 1448 48.3
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 5.9e-277 958.4 1446 48.3
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.6e-274 950.3 1187 50.8
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 2.8e-274 949.5 1245 50.0
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 7.5e-272 941.4 1417 47.9
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 7.5e-272 941.4 1417 47.9
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 7.5e-272 941.4 1419 47.8
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 9.8e-272 941.0 1423 45.6
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 6.3e-271 938.3 1192 52.3
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 4.5e-269 932.2 927 59.0
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 1.3e-268 930.6 1424 47.1
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 1.9e-267 926.8 1419 47.0
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.7e-260 903.7 1334 47.9
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 2.5e-259 899.8 1525 46.4
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 5.6e-259 898.7 902 56.9
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 8.0e-258 894.8 1259 48.8
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.2e-256 891.0 1513 45.9
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 2.4e-254 883.2 1380 46.0
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 7.8e-253 878.2 1451 43.7
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 6.8e-249 865.1 1363 45.5
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 7.6e-248 861.7 1371 47.2
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 3.2e-246 856.3 772 64.4
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 7.1e-238 828.6 1105 53.8
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.9e-235 820.5 1383 47.7
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.1e-227 794.7 1389 47.4
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 2.0e-224 783.9 847 55.7
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 1.1e-217 761.5 1394 42.8
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 5.8e-216 755.7 1425 44.5
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 3.9e-212 743.0 1379 42.9
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 2.1e-210 737.3 1361 39.6
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.7e-207 727.6 924 49.9
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 3.8e-207 726.5 1046 51.2
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 1.6e-205 721.1 1403 43.8
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 3.5e-205 719.9 1044 45.8
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 1.8e-204 717.6 1211 43.6
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 7.9e-197 692.2 1386 41.6
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.4e-192 676.8 1147 44.4
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 3.6e-189 666.8 532 69.7
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 1.5e-174 618.2 1230 38.6
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 8.3e-170 602.4 802 49.1
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 6.1e-157 559.7 1255 39.4
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 3.0e-156 557.4 1235 38.2
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 9.5e-150 535.8 1271 38.6
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 6.4e-146 523.1 895 54.7
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 3.6e-141 507.3 1312 35.1
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.5e-118 432.2 1382 32.6
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.1e-108 399.4 444 51.8
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 5.3e-108 397.1 1411 30.8
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 8.4e-106 389.8 313 67.1
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.1e-104 385.2 1420 31.8
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 4.0e-100 370.9 947 32.7
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 3.8e-90 337.8 1220 31.1
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 1.0e-87 329.7 548 42.2
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.8e-87 328.9 368 51.9
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.7e-74 285.8 1315 31.2
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 1.7e-69 269.2 497 40.8
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 1.1e-68 266.5 1017 30.4
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 5.3e-68 264.2 973 28.3
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 5.0e-66 257.7 964 29.0
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.9e-65 255.8 955 29.1
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 2.5e-65 255.4 449 43.7
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.8e-61 241.1 1128 28.5
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.2e-57 228.0 210 64.3
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 4.7e-56 224.6 207 59.4
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 4.0e-55 221.5 223 52.9
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 1.7e-53 216.1 305 42.0
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 2.2e-53 215.7 884 27.0
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 2.8e-53 215.3 313 44.1
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 2.8e-53 215.3 838 27.4
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 6.5e-50 204.1 1049 27.0
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 1.6e-48 199.5 938 27.9
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 2.1e-48 199.1 870 27.9
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 3.1e-44 185.3 237 46.8
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 2.9e-42 178.7 183 54.1
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 3.3e-41 175.3 773 26.9
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 4.3e-41 174.9 578 47.1
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 2.3e-39 169.1 499 31.1
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 6.8e-39 167.5 1058 23.9
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 2.2e-37 162.5 841 26.3
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 7.0e-36 157.5 722 26.0
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 7.0e-36 157.5 1079 24.2
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 7.3e-33 147.5 1045 23.1
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 5.4e-28 131.3 208 61.1
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 3.5e-27 128.6 210 39.5
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 6.0e-27 127.9 916 24.1
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 9.5e-25 120.6 84 67.9
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 3.1e-23 115.5 146 45.2
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 9.9e-22 110.5 143 44.8
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 2.9e-21 109.0 124 58.1
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 7.8e-19 100.9 407 25.6
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.5e-17 96.7 393 33.3
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 2.5e-17 95.9 90 55.6
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 3.6e-16 92.0 81 55.6
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 1.4e-12 80.1 377 27.3
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 2.4e-12 79.3 85 43.5
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 5.6e-09 68.2 69 56.5
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 5.6e-09 68.2 125 37.6
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.4e-07 63.5 34 82.4
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.1e-07 62.4 115 47.0
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 5.8e-06 58.2 52 51.9
SEGI_02030 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.6e-06 57.8 60 51.7


User provided reference genes

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