Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 3.7e-188 661.4 333 100.0
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.4e-179 632.9 333 94.9
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.1e-179 631.3 333 95.2
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 9.2e-179 630.2 333 95.2
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.3e-177 626.3 333 94.3
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.5e-173 612.8 333 92.8
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 9.2e-155 550.4 333 83.5
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 3.6e-151 538.5 333 82.6
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 9.0e-150 533.9 333 81.1
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.5e-144 516.5 333 78.4
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 2.4e-142 509.2 332 76.8
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 8.4e-140 500.7 335 76.4
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 7.1e-139 497.7 334 75.4
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 1.2e-138 496.9 332 75.9
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.6e-138 495.0 333 76.9
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 6.0e-138 494.6 333 74.5
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 6.0e-138 494.6 333 76.9
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 2.3e-137 492.7 332 75.6
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 5.1e-137 491.5 335 75.5
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.5e-136 490.0 332 75.6
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.5e-136 490.0 334 74.3
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.3e-136 488.8 334 76.0
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 7.4e-136 487.6 335 75.5
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.6e-135 486.5 335 74.9
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 8.1e-135 484.2 341 75.7
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 1.8e-134 483.0 335 74.9
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 6.9e-134 481.1 337 74.5
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 2.0e-133 479.6 335 75.5
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 2.0e-133 479.6 335 73.1
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 3.4e-133 478.8 333 73.6
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 5.8e-133 478.0 335 73.4
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 5.8e-133 478.0 335 73.7
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 2.2e-132 476.1 335 73.4
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 2.2e-132 476.1 336 74.1
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 4.9e-132 474.9 335 74.3
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 8.4e-132 474.2 335 73.4
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 1.1e-131 473.8 334 72.5
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.2e-131 472.2 321 76.6
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 9.3e-131 470.7 335 72.2
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.2e-130 470.3 334 73.7
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 2.7e-130 469.2 339 72.6
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 1.8e-129 466.5 335 71.3
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 2.3e-129 466.1 334 71.6
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.0e-129 465.7 335 71.0
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 3.9e-129 465.3 333 71.2
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 3.9e-129 465.3 333 73.9
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 3.9e-129 465.3 336 70.5
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 5.1e-129 464.9 325 73.5
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.5e-128 463.4 335 72.5
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 5.6e-128 461.5 336 72.0
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 2.1e-127 459.5 341 69.8
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 2.1e-127 459.5 341 69.8
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 4.8e-127 458.4 338 69.5
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 4.8e-127 458.4 333 72.7
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 4.8e-127 458.4 333 70.6
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 6.2e-127 458.0 331 70.4
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.4e-126 456.8 337 70.9
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 1.8e-126 456.4 336 70.8
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 2.4e-126 456.1 336 70.8
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 3.1e-126 455.7 341 70.4
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 1.2e-125 453.8 343 71.4
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 2.6e-125 452.6 336 70.5
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 3.4e-125 452.2 335 69.6
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 3.4e-125 452.2 337 70.3
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 1.7e-124 449.9 340 70.6
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.9e-124 448.4 340 70.3
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.9e-124 448.4 331 69.5
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 3.2e-123 445.7 336 69.3
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 3.2e-123 445.7 333 69.4
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 5.5e-123 444.9 336 69.3
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 3.5e-122 442.2 333 67.0
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 6.0e-122 441.4 336 68.8
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.0e-121 440.7 379 62.3
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.9e-120 436.4 330 68.8
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.9e-120 436.4 330 68.8
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.9e-120 436.4 334 67.4
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 4.3e-120 435.3 333 67.3
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 7.4e-120 434.5 331 68.6
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 1.3e-119 433.7 337 67.4
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 1.6e-119 433.3 326 69.3
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 3.1e-118 429.1 339 67.8
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.6e-117 426.0 338 67.2
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-116 423.7 333 67.3
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 5.0e-116 421.8 343 65.3
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 6.5e-116 421.4 338 66.3
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.9e-115 419.9 336 66.1
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 3.2e-115 419.1 339 65.2
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 9.4e-115 417.5 340 65.3
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.2e-114 417.2 339 65.2
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 2.1e-114 416.4 338 64.5
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 3.6e-114 415.6 338 64.8
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.6e-114 415.2 355 62.5
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.0e-113 414.1 342 65.5
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 6.7e-113 411.4 338 64.2
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 7.4e-112 407.9 342 65.2
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.3e-111 407.1 341 63.3
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 8.2e-111 404.4 348 65.5
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 4.1e-110 402.1 356 61.5
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 4.1e-110 402.1 356 61.5
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 2.0e-109 399.8 341 64.8
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 2.6e-109 399.4 359 64.1
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.3e-108 397.1 360 61.7
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 8.5e-108 394.4 335 61.8
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.0e-105 387.5 334 62.9
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 4.5e-101 372.1 262 73.7
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.0e-100 370.9 337 59.6
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 3.6e-98 362.5 284 68.7
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 4.7e-98 362.1 344 58.1
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.8e-97 360.1 353 55.8
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 2.3e-97 359.8 353 56.4
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 4.8e-95 352.1 360 57.5
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 2.4e-94 349.7 360 54.7
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 9.1e-94 347.8 331 57.4
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 2.0e-93 346.7 337 56.4
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 6.5e-92 341.7 324 59.6
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 3.7e-87 325.9 322 58.4
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 9.1e-78 294.7 229 66.4
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.8e-73 280.4 246 62.6
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 1.5e-72 277.3 256 59.0
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.4e-70 270.0 209 67.5
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 4.1e-70 269.2 355 47.3
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.1e-67 261.2 273 57.9
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 6.4e-63 245.4 189 67.7
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 7.8e-61 238.4 188 66.5
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 5.8e-56 222.2 359 43.2
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 1.7e-55 220.7 381 41.7
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.1e-54 218.0 359 42.1
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.2e-53 214.5 360 42.2
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.9e-51 207.2 214 56.5
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.6e-50 204.1 354 40.7
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 3.5e-45 186.4 175 54.3
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.7e-44 184.1 227 49.8
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 5.1e-44 182.6 364 35.4
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 8.7e-36 155.2 357 34.5
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 7.6e-32 142.1 343 33.8
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.1e-29 134.0 117 61.5
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.3e-26 124.8 92 62.0
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 4.0e-25 119.8 92 59.8
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 7.6e-24 115.5 140 45.7
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 7.6e-24 115.5 353 29.2
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 6.4e-23 112.5 133 45.1
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 2.4e-22 110.5 74 71.6
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 2.4e-22 110.5 112 47.3
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 3.2e-22 110.2 83 63.9
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.6e-21 107.8 145 44.8
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 4.6e-21 106.3 98 57.1
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.3e-20 104.8 56 91.1
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.1e-17 93.6 81 60.5
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 4.5e-16 89.7 150 34.7
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.0e-15 88.6 60 75.0
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.5e-14 84.0 335 27.2
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 7.9e-13 79.0 161 32.3
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 8.2e-10 68.9 42 81.0
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.0e-07 62.0 43 62.8
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.7e-07 61.2 53 49.1


User provided reference genes

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